Wall clock time and date at job start Tue Mar 31 2020 14:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37877 * 120.00434 * 294.30421 * 5 3 2 8 8 N 1.31514 * 120.00339 * 153.95015 * 7 5 3 9 9 Si 1.86805 * 120.00054 * 333.96047 * 7 5 3 10 10 H 1.48494 * 109.47190 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46651 * 299.99492 * 9 7 5 12 12 H 1.48501 * 109.47075 * 59.99169 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21366 * 120.00106 * 0.02562 * 14 13 3 16 16 C 1.49306 * 120.00195 * 179.97438 * 14 13 3 17 17 O 1.21390 * 119.99840 * 0.02562 * 16 14 13 18 18 N 1.34781 * 120.00195 * 179.97438 * 16 14 13 19 19 C 1.38750 * 120.00085 * 179.97438 * 18 16 14 20 20 N 1.29679 * 124.94322 * 179.71711 * 19 18 16 21 21 C 1.31908 * 116.92257 * 179.84215 * 20 19 18 22 22 C 1.50707 * 122.71393 * 180.22085 * 21 20 19 23 23 C 1.52996 * 117.49980 * 163.87551 * 22 21 20 24 24 C 1.52993 * 117.50204 * 95.24888 * 22 21 20 25 25 C 1.33524 * 114.56945 * 0.44921 * 21 20 19 26 26 S 1.70973 * 124.94227 * 0.02705 * 19 18 16 27 27 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 28 28 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 29 29 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 31 31 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 32 32 H 0.97007 * 119.99410 * 354.97021 * 8 7 5 33 33 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 34 34 H 0.96993 * 119.99572 * 0.02562 * 18 16 14 35 35 H 1.09010 * 115.54515 * 309.57646 * 22 21 20 36 36 H 1.09003 * 117.49672 * 359.97438 * 23 22 21 37 37 H 1.08999 * 117.50039 * 145.01824 * 23 22 21 38 38 H 1.09001 * 117.50376 * 214.98228 * 24 22 21 39 39 H 1.08997 * 117.49800 * 359.97327 * 24 22 21 40 40 H 1.07998 * 125.97058 * 179.73083 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3347 2.6307 -0.4665 16 6 0.0716 3.3213 -2.6738 17 8 0.8579 3.3496 -3.5982 18 7 -1.1445 3.8871 -2.8059 19 6 -1.4971 4.5034 -3.9980 20 7 -2.6394 5.0715 -4.2309 21 6 -2.8051 5.6133 -5.4222 22 6 -4.0774 6.3105 -5.8300 23 6 -4.0241 7.2126 -7.0646 24 6 -4.1324 7.8310 -5.6693 25 6 -1.7561 5.4897 -6.2391 26 16 -0.4917 4.6178 -5.3761 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8117 0.4042 0.4383 33 1 2.2954 2.1150 -1.9977 34 1 -1.7728 3.8642 -2.0674 35 1 -4.9968 5.7521 -5.6535 36 1 -3.0687 7.3021 -7.5816 37 1 -4.9085 7.2478 -7.7007 38 1 -5.0880 8.2731 -5.3875 39 1 -3.2486 8.3270 -5.2682 40 1 -1.6940 5.8591 -7.2520 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287709153.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:05 Heat of formation + Delta-G solvation = -13.167038 kcal Electronic energy + Delta-G solvation = -24252.030262 eV Core-core repulsion = 20580.151480 eV Total energy + Delta-G solvation = -3671.878783 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.32072 -41.11786 -40.10663 -37.89041 -37.34918 -36.01345 -34.52281 -33.22156 -30.72001 -29.40606 -27.37815 -25.94655 -24.32359 -23.30617 -23.22268 -22.65397 -21.51546 -20.99552 -19.82706 -19.49449 -18.83891 -18.10149 -17.63460 -17.43534 -16.93022 -16.70971 -16.18900 -15.83071 -15.50400 -15.20423 -15.03010 -14.56354 -14.47677 -14.28489 -14.06986 -13.76338 -13.61786 -13.12065 -12.64072 -12.56451 -12.53159 -12.34037 -12.31004 -12.04691 -11.78333 -11.59385 -11.41318 -11.32318 -11.26021 -10.89621 -10.86800 -10.42568 -10.32617 -10.09001 -9.37904 -8.84044 -6.43473 -0.60342 -0.01960 0.21534 0.67239 0.94428 1.49506 1.52587 1.58013 1.72376 1.98127 2.32840 2.44363 2.87850 2.92552 3.23493 3.34571 3.96163 4.04099 4.15240 4.28211 4.30664 4.36393 4.40725 4.47111 4.50325 4.77483 4.79573 4.96992 5.05803 5.08932 5.10885 5.16207 5.20191 5.26494 5.29371 5.45950 5.50774 5.61470 6.00205 6.10270 6.46636 6.48468 6.63312 6.87861 7.28208 8.53856 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.002590 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.448245 B =10807.377455 C =11126.822597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C 0.254 3.746 4 H 0.038 0.962 5 C -0.632 4.632 6 H 0.041 0.959 7 C 0.008 3.992 8 N -0.912 5.912 9 Si 1.062 2.938 10 H -0.283 1.283 11 H -0.270 1.270 12 H -0.247 1.247 13 N -0.662 5.662 14 C 0.509 3.491 15 O -0.532 6.532 16 C 0.517 3.483 17 O -0.495 6.495 18 N -0.591 5.591 19 C 0.219 3.781 20 N -0.516 5.516 21 C 0.104 3.896 22 C -0.104 4.104 23 C -0.149 4.149 24 C -0.167 4.167 25 C -0.297 4.297 26 S 0.243 5.757 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.262 0.738 33 H 0.411 0.589 34 H 0.439 0.561 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.311 10.543 -16.124 26.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.150 3.850 4 H 0.056 0.944 5 C -0.669 4.669 6 H 0.059 0.941 7 C -0.195 4.195 8 N -0.545 5.545 9 Si 0.883 3.117 10 H -0.209 1.209 11 H -0.196 1.196 12 H -0.172 1.172 13 N -0.311 5.311 14 C 0.288 3.712 15 O -0.410 6.410 16 C 0.298 3.702 17 O -0.368 6.368 18 N -0.242 5.242 19 C -0.147 4.147 20 N -0.240 5.240 21 C -0.028 4.028 22 C -0.125 4.125 23 C -0.186 4.186 24 C -0.205 4.205 25 C -0.437 4.437 26 S 0.494 5.506 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.247 0.753 34 H 0.281 0.719 35 H 0.138 0.862 36 H 0.124 0.876 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.104 0.896 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -17.436 9.813 -14.212 24.542 hybrid contribution -0.307 0.570 -1.620 1.744 sum -17.743 10.383 -15.831 25.947 Atomic orbital electron populations 1.21822 0.95213 1.00935 1.01552 1.22167 0.95534 0.97722 1.01594 1.19026 0.94128 0.89962 0.81879 0.94390 1.22090 0.91064 1.49504 1.04291 0.94079 1.26751 0.96685 0.91000 1.05061 1.70968 1.15028 1.38376 1.30101 0.83805 0.76053 0.78615 0.73179 1.20900 1.19553 1.17161 1.46030 1.13897 1.52941 1.18282 1.19390 0.83877 0.80897 0.87011 1.90771 1.50505 1.59288 1.40471 1.20560 0.81202 0.79143 0.89313 1.90701 1.49398 1.56348 1.40334 1.42279 1.16578 1.51578 1.13733 1.23448 0.95515 1.01576 0.94185 1.66003 1.19565 1.15381 1.23014 1.19311 0.97023 0.99388 0.87040 1.20420 0.93684 0.92878 1.05486 1.23178 1.05023 1.00149 0.90245 1.23048 1.03929 0.92894 1.00588 1.27546 0.97832 1.10853 1.07429 1.84984 1.14394 1.49854 1.01388 0.93175 0.93565 0.92219 0.92708 0.92217 0.92884 0.75312 0.71920 0.86180 0.87588 0.86047 0.86921 0.89618 0.77675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.53 71.98 0.61 -4.23 16 2 C -0.13 -5.36 5.37 30.60 0.16 -5.19 16 3 C 0.25 11.26 1.84 44.25 0.08 11.34 16 4 H 0.04 1.78 6.12 -2.39 -0.01 1.77 16 5 C -0.63 -33.04 8.92 25.60 0.23 -32.81 16 6 H 0.04 2.31 7.96 -2.91 -0.02 2.29 16 7 C 0.01 0.46 5.15 84.65 0.44 0.89 16 8 N -0.91 -53.18 13.70 21.45 0.29 -52.89 16 9 Si 1.06 47.44 26.56 68.60 1.82 49.26 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.25 -10.00 6.34 99.48 0.63 -9.37 16 13 N -0.66 -25.43 5.02 -447.58 -2.25 -27.68 16 14 C 0.51 17.69 6.49 87.22 0.57 18.25 16 15 O -0.53 -19.70 13.62 -3.30 -0.04 -19.74 16 16 C 0.52 15.65 7.85 87.22 0.68 16.33 16 17 O -0.49 -15.65 13.93 -3.37 -0.05 -15.70 16 18 N -0.59 -15.93 5.39 -315.11 -1.70 -17.63 16 19 C 0.22 5.85 8.18 179.28 1.47 7.32 16 20 N -0.52 -13.63 10.58 -189.74 -2.01 -15.63 16 21 C 0.10 2.24 6.41 41.48 0.27 2.51 16 22 C -0.10 -1.65 6.30 -11.54 -0.07 -1.72 16 23 C -0.15 -1.44 9.91 30.59 0.30 -1.14 16 24 C -0.17 -2.15 10.23 30.59 0.31 -1.84 16 25 C -0.30 -5.48 10.50 66.75 0.70 -4.78 16 26 S 0.24 5.65 20.21 -56.49 -1.14 4.51 16 27 H 0.05 1.80 7.89 -2.39 -0.02 1.78 16 28 H 0.05 1.59 5.63 -2.39 -0.01 1.58 16 29 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 2.54 5.77 -2.39 -0.01 2.53 16 32 H 0.26 15.35 8.73 -92.70 -0.81 14.54 16 33 H 0.41 15.19 7.99 -92.71 -0.74 14.44 16 34 H 0.44 10.92 8.29 -92.71 -0.77 10.16 16 35 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.11 0.86 6.79 -2.39 -0.02 0.84 16 37 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.21 2.38 6.95 -2.91 -0.02 2.36 16 Total: -1.00 -61.83 346.20 0.17 -61.66 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -0.51 Total: 28.91 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.75 Total: 4.93 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -5.66 Total: -113.83 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.09 Total: -35.45 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.82 Total: 49.26 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -1.14 Total: 4.51 kcal Total: -61.83 0.17 -61.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287709153.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.495 kcal (2) G-P(sol) polarization free energy of solvation -61.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds