Wall clock time and date at job start Tue Mar 31 2020 14:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46824 * 2 1 4 4 H 1.09000 * 109.58054 * 305.26793 * 3 2 1 5 5 C 1.53535 * 109.57966 * 185.00347 * 3 2 1 6 6 N 1.47307 * 107.57884 * 181.89750 * 5 3 2 7 7 C 1.34772 * 121.15912 * 221.96837 * 6 5 3 8 8 O 1.21289 * 120.00123 * 174.20696 * 7 6 5 9 9 C 1.50709 * 119.99985 * 354.21164 * 7 6 5 10 10 C 1.52999 * 109.46801 * 185.43555 * 9 7 6 11 11 C 1.50704 * 109.47122 * 179.97438 * 10 9 7 12 12 H 1.08006 * 119.99384 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00376 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00083 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99750 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47012 * 90.00500 * 15 13 11 17 17 H 1.48504 * 109.47066 * 210.00518 * 15 13 11 18 18 H 1.48505 * 109.47454 * 330.00180 * 15 13 11 19 19 C 1.40548 * 117.68076 * 41.98396 * 6 5 3 20 20 C 1.38617 * 120.08219 * 166.46792 * 19 6 5 21 21 C 1.38242 * 119.89981 * 180.09813 * 20 19 6 22 22 C 1.38285 * 120.06967 * 359.46034 * 21 20 19 23 23 C 1.38291 * 120.27995 * 0.31589 * 22 21 20 24 24 Cl 1.73605 * 119.98616 * 180.02562 * 23 22 21 25 25 C 1.38809 * 120.03048 * 0.03338 * 23 22 21 26 26 O 1.35923 * 119.65929 * 179.59691 * 25 23 22 27 27 H 1.08995 * 109.47622 * 60.00040 * 1 2 3 28 28 H 1.08997 * 109.46751 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46780 * 299.99851 * 1 2 3 30 30 H 1.08996 * 109.46843 * 240.00431 * 2 1 3 31 31 H 1.08997 * 109.47176 * 119.99687 * 2 1 3 32 32 H 1.09005 * 109.84074 * 62.37416 * 5 3 2 33 33 H 1.08999 * 109.89208 * 301.44431 * 5 3 2 34 34 H 1.09000 * 109.46609 * 305.42863 * 9 7 6 35 35 H 1.08996 * 109.47191 * 65.42843 * 9 7 6 36 36 H 1.09000 * 109.46974 * 299.99085 * 10 9 7 37 37 H 1.08996 * 109.47830 * 59.99679 * 10 9 7 38 38 H 0.97004 * 120.00183 * 179.97438 * 14 13 11 39 39 H 1.08002 * 120.04688 * 359.82062 * 20 19 6 40 40 H 1.07995 * 119.96711 * 179.73413 * 21 20 19 41 41 H 1.07997 * 119.85565 * 180.29358 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6026 1.9846 -0.8385 5 6 3.5701 1.4474 -0.1262 6 7 4.0163 2.8503 -0.0754 7 6 4.9782 3.3065 -0.9017 8 8 5.2562 4.4870 -0.9156 9 6 5.7085 2.3497 -1.8087 10 6 6.8310 3.0927 -2.5360 11 6 7.5617 2.1359 -3.4425 12 1 7.2563 1.1012 -3.4942 13 6 8.6208 2.5810 -4.2048 14 7 9.2581 1.7462 -4.9962 15 14 9.1494 4.3704 -4.1146 16 1 10.1711 4.5316 -3.0491 17 1 9.7260 4.7826 -5.4197 18 1 7.9715 5.2196 -3.8036 19 6 3.4041 3.6965 0.8651 20 6 3.9621 4.9317 1.1554 21 6 3.3579 5.7602 2.0825 22 6 2.1924 5.3624 2.7115 23 6 1.6286 4.1332 2.4224 24 17 0.1649 3.6417 3.2161 25 6 2.2326 3.2920 1.4981 26 8 1.6765 2.0820 1.2258 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8645 0.9997 -1.0755 33 1 4.0120 0.8887 0.6988 34 1 6.1336 1.5399 -1.2157 35 1 5.0121 1.9384 -2.5393 36 1 6.4060 3.9026 -3.1289 37 1 7.5275 3.5041 -1.8054 38 1 10.0029 2.0594 -5.5329 39 1 4.8701 5.2445 0.6612 40 1 3.7942 6.7209 2.3127 41 1 1.7207 6.0144 3.4318 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291471325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:50 Heat of formation + Delta-G solvation = -52.351320 kcal Electronic energy + Delta-G solvation = -25151.512062 eV Core-core repulsion = 21443.597663 eV Total energy + Delta-G solvation = -3707.914398 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53209 -39.23287 -38.10489 -36.50996 -35.43233 -34.20754 -33.71868 -31.65987 -30.29601 -30.06752 -28.45587 -26.28256 -24.65976 -23.57661 -22.39313 -21.48267 -20.71934 -19.21548 -18.49906 -17.62457 -17.09559 -16.57857 -16.15178 -15.72743 -15.42332 -14.98840 -14.68701 -14.38953 -14.16810 -14.07173 -13.83820 -13.63727 -13.39025 -12.81374 -12.65963 -12.58594 -12.28384 -12.13169 -11.81786 -11.77357 -11.50835 -11.39306 -11.17361 -11.08812 -11.06452 -10.94796 -10.29801 -10.17187 -10.14360 -9.86792 -9.32395 -9.27171 -8.60071 -8.47439 -7.96345 -6.11848 -4.11864 1.02406 1.09260 1.97014 2.59884 2.68959 2.89466 3.31011 3.38426 3.47434 3.57225 4.11455 4.38284 4.42449 4.49325 4.61644 4.81020 4.86628 4.92711 5.02273 5.13995 5.15244 5.23250 5.23558 5.38178 5.42742 5.50695 5.64696 5.73174 5.80367 5.83768 5.87319 5.98171 6.02764 6.22744 6.37019 6.45176 6.68688 7.09878 7.18075 7.19141 7.27787 7.66712 8.15584 8.41407 8.89523 9.50383 11.00727 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.003451 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.085733 B = 8111.379230 C = 9615.019256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.080 0.920 5 C 0.069 3.931 6 N -0.565 5.565 7 C 0.517 3.483 8 O -0.510 6.510 9 C -0.119 4.119 10 C 0.001 3.999 11 C -0.528 4.528 12 H 0.073 0.927 13 C 0.071 3.929 14 N -0.901 5.901 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.261 1.261 19 C 0.101 3.899 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.107 4.107 23 C -0.045 4.045 24 Cl -0.061 7.061 25 C 0.098 3.902 26 O -0.296 6.296 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.027 0.973 37 H 0.019 0.981 38 H 0.264 0.736 39 H 0.171 0.829 40 H 0.136 0.864 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.469 0.116 15.169 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C 0.020 3.980 4 H 0.098 0.902 5 C -0.054 4.054 6 N -0.291 5.291 7 C 0.309 3.691 8 O -0.384 6.384 9 C -0.158 4.158 10 C -0.036 4.036 11 C -0.566 4.566 12 H 0.091 0.909 13 C -0.131 4.131 14 N -0.539 5.539 15 Si 0.703 3.297 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.185 1.185 19 C 0.005 3.995 20 C -0.133 4.133 21 C -0.136 4.136 22 C -0.127 4.127 23 C -0.073 4.073 24 Cl -0.032 7.032 25 C 0.049 3.951 26 O -0.210 6.210 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.188 0.812 40 H 0.154 0.846 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.358 0.532 15.103 23.779 hybrid contribution 0.360 0.767 -0.093 0.852 sum -17.998 1.299 15.010 23.472 Atomic orbital electron populations 1.21725 0.94512 1.01990 1.02613 1.21551 0.97444 0.92207 1.03899 1.22941 0.93778 0.95457 0.85867 0.90187 1.22800 0.94863 0.81923 1.05815 1.46120 1.38037 1.10258 1.34641 1.21875 0.77785 0.90207 0.79187 1.90508 1.64127 1.17590 1.66190 1.21775 0.99087 0.97850 0.97137 1.19406 0.92454 0.96251 0.95529 1.21038 1.14862 0.97055 1.23636 0.90856 1.24957 0.95883 0.97605 0.94647 1.69899 1.21984 1.35104 1.26918 0.86810 0.79571 0.85852 0.77420 1.20174 1.21321 1.18523 1.17949 0.92821 0.93676 0.95006 1.21986 1.02019 0.92042 0.97254 1.21030 0.95427 1.00400 0.96699 1.20852 0.96717 0.94005 1.01129 1.20010 0.91841 0.94845 1.00616 1.98349 1.34355 1.91745 1.78750 1.18096 0.91154 0.87237 0.98584 1.86092 1.66081 1.29341 1.39489 0.92633 0.92242 0.91779 0.89169 0.90301 0.86633 0.89195 0.89129 0.88975 0.95491 0.96219 0.92585 0.81175 0.84612 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.82 37.16 0.36 -0.76 16 2 C -0.11 -0.84 5.66 -26.73 -0.15 -0.99 16 3 C 0.08 0.77 2.95 -26.45 -0.08 0.69 16 4 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 5 C 0.07 0.74 5.69 -3.32 -0.02 0.72 16 6 N -0.56 -8.22 3.01 -112.34 -0.34 -8.56 16 7 C 0.52 9.03 7.59 -10.98 -0.08 8.94 16 8 O -0.51 -10.35 12.85 5.55 0.07 -10.28 16 9 C -0.12 -2.13 4.12 -27.88 -0.11 -2.25 16 10 C 0.00 0.03 3.35 -27.88 -0.09 -0.06 16 11 C -0.53 -14.44 9.66 -34.44 -0.33 -14.78 16 12 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 13 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 15 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 19 C 0.10 1.48 6.33 -83.37 -0.53 0.96 16 20 C -0.11 -1.66 8.94 -39.44 -0.35 -2.01 16 21 C -0.12 -1.37 10.05 -39.56 -0.40 -1.77 16 22 C -0.11 -1.19 9.81 -39.54 -0.39 -1.58 16 23 C -0.05 -0.57 6.33 -39.35 -0.25 -0.81 16 24 Cl -0.06 -0.68 28.47 -51.86 -1.48 -2.16 16 25 C 0.10 1.32 6.51 -39.03 -0.25 1.07 16 26 O -0.30 -3.63 8.98 -19.50 -0.18 -3.81 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.55 7.85 -51.92 -0.41 0.15 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.12 1.07 6.43 -51.93 -0.33 0.73 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.48 8.09 -51.93 -0.42 1.06 16 35 H 0.09 1.49 7.62 -51.93 -0.40 1.10 16 36 H 0.03 0.66 7.10 -51.93 -0.37 0.29 16 37 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.17 2.82 5.15 -52.58 -0.27 2.55 16 40 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -32.23 348.84 -8.89 -41.12 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.56 Total: -1.68 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -2.77 Total: -10.67 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.44 Total: -34.93 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.10 Total: -14.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.48 Total: -2.16 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.23 -8.89 -41.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291471325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.231 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds