Wall clock time and date at job start Tue Mar 31 2020 14:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46824 * 2 1 4 4 H 1.09000 * 109.58054 * 305.26793 * 3 2 1 5 5 C 1.53535 * 109.57966 * 185.00347 * 3 2 1 6 6 N 1.47307 * 107.57884 * 181.89750 * 5 3 2 7 7 C 1.34772 * 121.15912 * 221.96837 * 6 5 3 8 8 O 1.21289 * 120.00123 * 174.20696 * 7 6 5 9 9 C 1.50709 * 119.99985 * 354.21164 * 7 6 5 10 10 C 1.52999 * 109.46801 * 185.43555 * 9 7 6 11 11 C 1.50704 * 109.47122 * 179.97438 * 10 9 7 12 12 H 1.08006 * 119.99384 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00376 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00083 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99750 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47012 * 90.00500 * 15 13 11 17 17 H 1.48504 * 109.47066 * 210.00518 * 15 13 11 18 18 H 1.48505 * 109.47454 * 330.00180 * 15 13 11 19 19 C 1.40548 * 117.68076 * 41.98396 * 6 5 3 20 20 C 1.38617 * 120.08219 * 166.46792 * 19 6 5 21 21 C 1.38242 * 119.89981 * 180.09813 * 20 19 6 22 22 C 1.38285 * 120.06967 * 359.46034 * 21 20 19 23 23 C 1.38291 * 120.27995 * 0.31589 * 22 21 20 24 24 Cl 1.73605 * 119.98616 * 180.02562 * 23 22 21 25 25 C 1.38809 * 120.03048 * 0.03338 * 23 22 21 26 26 O 1.35923 * 119.65929 * 179.59691 * 25 23 22 27 27 H 1.08995 * 109.47622 * 60.00040 * 1 2 3 28 28 H 1.08997 * 109.46751 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46780 * 299.99851 * 1 2 3 30 30 H 1.08996 * 109.46843 * 240.00431 * 2 1 3 31 31 H 1.08997 * 109.47176 * 119.99687 * 2 1 3 32 32 H 1.09005 * 109.84074 * 62.37416 * 5 3 2 33 33 H 1.08999 * 109.89208 * 301.44431 * 5 3 2 34 34 H 1.09000 * 109.46609 * 305.42863 * 9 7 6 35 35 H 1.08996 * 109.47191 * 65.42843 * 9 7 6 36 36 H 1.09000 * 109.46974 * 299.99085 * 10 9 7 37 37 H 1.08996 * 109.47830 * 59.99679 * 10 9 7 38 38 H 0.97004 * 120.00183 * 179.97438 * 14 13 11 39 39 H 1.08002 * 120.04688 * 359.82062 * 20 19 6 40 40 H 1.07995 * 119.96711 * 179.73413 * 21 20 19 41 41 H 1.07997 * 119.85565 * 180.29358 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6026 1.9846 -0.8385 5 6 3.5701 1.4474 -0.1262 6 7 4.0163 2.8503 -0.0754 7 6 4.9782 3.3065 -0.9017 8 8 5.2562 4.4870 -0.9156 9 6 5.7085 2.3497 -1.8087 10 6 6.8310 3.0927 -2.5360 11 6 7.5617 2.1359 -3.4425 12 1 7.2563 1.1012 -3.4942 13 6 8.6208 2.5810 -4.2048 14 7 9.2581 1.7462 -4.9962 15 14 9.1494 4.3704 -4.1146 16 1 10.1711 4.5316 -3.0491 17 1 9.7260 4.7826 -5.4197 18 1 7.9715 5.2196 -3.8036 19 6 3.4041 3.6965 0.8651 20 6 3.9621 4.9317 1.1554 21 6 3.3579 5.7602 2.0825 22 6 2.1924 5.3624 2.7115 23 6 1.6286 4.1332 2.4224 24 17 0.1649 3.6417 3.2161 25 6 2.2326 3.2920 1.4981 26 8 1.6765 2.0820 1.2258 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8645 0.9997 -1.0755 33 1 4.0120 0.8887 0.6988 34 1 6.1336 1.5399 -1.2157 35 1 5.0121 1.9384 -2.5393 36 1 6.4060 3.9026 -3.1289 37 1 7.5275 3.5041 -1.8054 38 1 10.0029 2.0594 -5.5329 39 1 4.8701 5.2445 0.6612 40 1 3.7942 6.7209 2.3127 41 1 1.7207 6.0144 3.4318 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291471325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:50 Heat of formation + Delta-G solvation = -70.367753 kcal Electronic energy + Delta-G solvation = -25152.293313 eV Core-core repulsion = 21443.597663 eV Total energy + Delta-G solvation = -3708.695649 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.57488 -40.44013 -39.01743 -37.46519 -36.53947 -35.64706 -34.93966 -33.49554 -31.39975 -30.95301 -29.53198 -27.93218 -25.51988 -24.78832 -23.30913 -22.89201 -21.78446 -20.48247 -19.45301 -19.19608 -18.44818 -17.77219 -17.31536 -16.98012 -16.35633 -16.23095 -16.03839 -15.56373 -15.35949 -15.01390 -15.00350 -14.79136 -14.65547 -14.30080 -14.02781 -13.59027 -13.32430 -13.16690 -12.98674 -12.88603 -12.77198 -12.65730 -12.15829 -12.08219 -12.00676 -11.97250 -11.83550 -11.80459 -11.74090 -11.41464 -11.16811 -10.78838 -10.59581 -9.45867 -9.00238 -8.32045 -6.35185 0.00390 0.10837 1.01223 1.32927 1.35943 1.41707 1.49247 1.54187 2.01750 2.34087 2.57321 3.04054 3.26976 3.34041 3.64856 3.79258 3.83092 3.98806 4.10848 4.18512 4.22631 4.33681 4.36355 4.39446 4.44579 4.50169 4.66177 4.80289 4.88244 4.95438 4.96507 5.11306 5.20992 5.26535 5.30270 5.37356 5.38987 5.43457 5.58030 5.68567 5.99986 6.16209 6.22087 6.70578 6.88627 7.30372 8.83312 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.003451 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.085733 B = 8111.379230 C = 9615.019256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C 0.076 3.924 4 H 0.074 0.926 5 C 0.061 3.939 6 N -0.560 5.560 7 C 0.519 3.481 8 O -0.547 6.547 9 C -0.110 4.110 10 C 0.005 3.995 11 C -0.527 4.527 12 H 0.054 0.946 13 C 0.016 3.984 14 N -0.942 5.942 15 Si 0.935 3.065 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.260 1.260 19 C 0.076 3.924 20 C -0.133 4.133 21 C -0.112 4.112 22 C -0.096 4.096 23 C -0.056 4.056 24 Cl -0.050 7.050 25 C 0.094 3.906 26 O -0.301 6.301 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.013 0.987 37 H 0.011 0.989 38 H 0.267 0.733 39 H 0.148 0.852 40 H 0.161 0.839 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.958 0.269 16.590 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C 0.019 3.981 4 H 0.092 0.908 5 C -0.060 4.060 6 N -0.285 5.285 7 C 0.311 3.689 8 O -0.425 6.425 9 C -0.150 4.150 10 C -0.033 4.033 11 C -0.565 4.565 12 H 0.072 0.928 13 C -0.182 4.182 14 N -0.583 5.583 15 Si 0.759 3.241 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.184 1.184 19 C -0.019 4.019 20 C -0.153 4.153 21 C -0.131 4.131 22 C -0.115 4.115 23 C -0.083 4.083 24 Cl -0.021 7.021 25 C 0.045 3.955 26 O -0.215 6.215 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.150 0.850 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.032 0.968 37 H 0.029 0.971 38 H 0.076 0.924 39 H 0.166 0.834 40 H 0.179 0.821 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -19.884 0.655 16.552 25.880 hybrid contribution 0.715 0.660 -0.464 1.079 sum -19.169 1.316 16.088 25.060 Atomic orbital electron populations 1.21712 0.94510 1.02675 1.01826 1.21603 0.97350 0.90392 1.05186 1.23131 0.93226 0.96760 0.84947 0.90780 1.23127 0.95458 0.80088 1.07293 1.46003 1.37091 1.11654 1.33748 1.21594 0.78359 0.89436 0.79496 1.90509 1.65580 1.18854 1.67532 1.21579 0.98006 0.97707 0.97691 1.19243 0.93698 0.95465 0.94871 1.21370 1.14652 0.96929 1.23593 0.92770 1.25761 0.96347 1.01486 0.94650 1.70011 1.22961 1.37028 1.28256 0.85882 0.79234 0.81171 0.77765 1.19401 1.20596 1.18410 1.18097 0.93797 0.94096 0.95871 1.21937 1.01928 0.92938 0.98524 1.21294 0.95387 1.00862 0.95565 1.21200 0.95948 0.93682 1.00648 1.20262 0.92312 0.95252 1.00511 1.98352 1.33623 1.91738 1.78403 1.18213 0.90855 0.87792 0.98624 1.86099 1.66045 1.28892 1.40433 0.92735 0.90830 0.93250 0.87090 0.89741 0.84959 0.87945 0.87320 0.87069 0.96839 0.97101 0.92381 0.83429 0.82120 0.81555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.82 71.98 0.71 -1.23 16 2 C -0.11 -1.34 5.66 30.60 0.17 -1.17 16 3 C 0.08 1.40 2.95 30.77 0.09 1.50 16 4 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 5 C 0.06 1.22 5.69 86.40 0.49 1.71 16 6 N -0.56 -15.92 3.01 -627.72 -1.89 -17.81 16 7 C 0.52 18.00 7.59 87.66 0.67 18.66 16 8 O -0.55 -22.62 12.85 -3.06 -0.04 -22.66 16 9 C -0.11 -3.87 4.12 29.85 0.12 -3.75 16 10 C 0.01 0.24 3.35 29.85 0.10 0.34 16 11 C -0.53 -29.04 9.66 25.60 0.25 -28.79 16 12 H 0.05 3.12 7.99 -2.91 -0.02 3.09 16 13 C 0.02 0.89 5.47 84.65 0.46 1.36 16 14 N -0.94 -57.49 13.96 21.45 0.30 -57.19 16 15 Si 0.93 45.29 27.47 68.60 1.88 47.17 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.26 -12.45 6.54 99.48 0.65 -11.80 16 19 C 0.08 2.21 6.33 38.05 0.24 2.45 16 20 C -0.13 -3.89 8.94 22.36 0.20 -3.69 16 21 C -0.11 -2.47 10.05 22.28 0.22 -2.24 16 22 C -0.10 -1.89 9.81 22.29 0.22 -1.67 16 23 C -0.06 -1.28 6.33 22.42 0.14 -1.14 16 24 Cl -0.05 -1.03 28.47 -2.72 -0.08 -1.11 16 25 C 0.09 2.43 6.51 22.63 0.15 2.58 16 26 O -0.30 -6.95 8.98 -92.68 -0.83 -7.79 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.78 7.85 -2.38 -0.02 0.76 16 30 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.13 2.13 6.43 -2.38 -0.02 2.12 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.11 3.40 8.09 -2.39 -0.02 3.38 16 35 H 0.11 3.44 7.62 -2.39 -0.02 3.42 16 36 H 0.01 0.66 7.10 -2.39 -0.02 0.64 16 37 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 38 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.15 5.05 5.15 -4.37 -0.02 5.03 16 40 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -70.37 348.84 4.56 -65.81 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.98 Total: 8.63 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 4.23 Total: -15.08 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -1.59 Total: -74.99 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.87 Total: -30.45 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -70.37 4.56 -65.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291471325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.554 kcal (2) G-P(sol) polarization free energy of solvation -70.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds