Wall clock time and date at job start Tue Mar 31 2020 14:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99290 * 2 1 4 4 N 1.46510 * 109.46683 * 125.00516 * 3 2 1 5 5 C 1.46498 * 119.99626 * 269.99401 * 4 3 2 6 6 C 1.50696 * 109.47542 * 269.99929 * 5 4 3 7 7 H 1.07999 * 119.99658 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00130 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00080 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99945 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47329 * 90.00020 * 10 8 6 12 12 H 1.48500 * 109.47193 * 210.00006 * 10 8 6 13 13 H 1.48497 * 109.47179 * 329.99693 * 10 8 6 14 14 C 1.34772 * 120.00088 * 89.99803 * 4 3 2 15 15 O 1.21277 * 120.00296 * 179.97438 * 14 4 3 16 16 C 1.50700 * 119.99924 * 0.02562 * 14 4 3 17 17 C 1.53002 * 109.47462 * 180.02562 * 16 14 4 18 18 O 1.42893 * 109.47763 * 180.02562 * 17 16 14 19 19 C 1.35916 * 117.00323 * 179.97438 * 18 17 16 20 20 C 1.38728 * 120.04362 * 0.27384 * 19 18 17 21 21 C 1.38137 * 119.95782 * 180.23553 * 20 19 18 22 22 C 1.38365 * 120.04335 * 359.48598 * 21 20 19 23 23 Cl 1.73604 * 119.96019 * 180.27880 * 22 21 20 24 24 C 1.38371 * 120.08418 * 0.25849 * 22 21 20 25 25 C 1.38143 * 120.04298 * 0.02562 * 24 22 21 26 26 H 1.08001 * 119.99721 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00357 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00357 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47599 * 5.00746 * 3 2 1 30 30 H 1.09005 * 109.47269 * 245.00091 * 3 2 1 31 31 H 1.09002 * 109.47407 * 30.00635 * 5 4 3 32 32 H 1.09005 * 109.46968 * 150.00419 * 5 4 3 33 33 H 0.96998 * 120.00099 * 179.97438 * 9 8 6 34 34 H 1.09006 * 109.47301 * 59.99929 * 16 14 4 35 35 H 1.09000 * 109.47206 * 299.99920 * 16 14 4 36 36 H 1.08998 * 109.47155 * 59.99363 * 17 16 14 37 37 H 1.09008 * 109.46599 * 299.99809 * 17 16 14 38 38 H 1.07998 * 120.01718 * 359.97438 * 20 19 18 39 39 H 1.08002 * 119.98114 * 179.77139 * 21 20 19 40 40 H 1.08001 * 119.97793 * 180.02562 * 24 22 21 41 41 H 1.07998 * 120.01925 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5588 1.8650 2.4249 6 6 2.8441 3.3436 2.4805 7 1 3.3032 3.8371 1.6367 8 6 2.5192 4.0664 3.6088 9 7 1.9598 3.4656 4.6362 10 14 2.8723 5.8995 3.6775 11 1 1.6989 6.6493 3.1616 12 1 3.1371 6.3003 5.0826 13 1 4.0616 6.2061 2.8428 14 6 4.2496 0.8663 0.9824 15 8 5.0200 0.8889 1.9188 16 6 4.6972 0.3187 -0.3484 17 6 6.1533 -0.1401 -0.2475 18 8 6.5779 -0.6589 -1.5094 19 6 7.8566 -1.1121 -1.5917 20 6 8.6836 -1.0637 -0.4788 21 6 9.9844 -1.5203 -0.5657 22 6 10.4595 -2.0355 -1.7587 23 17 12.0925 -2.6154 -1.8635 24 6 9.6346 -2.0895 -2.8684 25 6 8.3349 -1.6285 -2.7871 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3584 2.1317 0.0897 30 1 2.6212 1.4028 -0.9314 31 1 1.4887 1.6966 2.5460 32 1 3.0990 1.3603 3.2260 33 1 1.7315 3.9740 5.4301 34 1 4.6125 1.0957 -1.1082 35 1 4.0681 -0.5281 -0.6229 36 1 6.2376 -0.9172 0.5122 37 1 6.7827 0.7064 0.0272 38 1 8.3118 -0.6654 0.4536 39 1 10.6297 -1.4794 0.2994 40 1 10.0071 -2.4924 -3.7986 41 1 7.6913 -1.6712 -3.6532 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292537898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:37 Heat of formation + Delta-G solvation = -38.501681 kcal Electronic energy + Delta-G solvation = -23782.223749 eV Core-core repulsion = 20074.909917 eV Total energy + Delta-G solvation = -3707.313833 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.41029 -39.24886 -37.86854 -36.40679 -35.78392 -33.32352 -32.25014 -31.95586 -31.31307 -29.58207 -27.68652 -25.65556 -24.75045 -23.11915 -22.52336 -21.61290 -19.99932 -18.82543 -18.18234 -16.92371 -16.60866 -16.34848 -16.27814 -15.93208 -15.54528 -14.81414 -14.78791 -14.48368 -14.14475 -13.82454 -13.71697 -13.64084 -13.17171 -12.66816 -12.58635 -12.41269 -12.09402 -11.96161 -11.72977 -11.47754 -11.39114 -11.27497 -11.08487 -10.93737 -10.89983 -10.64281 -10.63856 -10.23528 -9.70215 -9.39530 -9.24272 -9.09091 -8.47986 -8.35004 -7.79627 -6.08976 -4.14095 0.95410 0.97968 1.93061 2.39192 2.87304 3.24937 3.27132 3.34152 3.36343 3.38683 4.01358 4.41033 4.46594 4.55455 4.80317 4.88800 4.96132 5.01960 5.07218 5.18876 5.25336 5.27813 5.33283 5.43589 5.57834 5.61660 5.70077 5.78856 5.81080 5.96922 5.97512 6.02903 6.13971 6.32210 6.74486 6.84914 7.00370 7.16254 7.37546 7.45540 7.86753 8.17348 8.28385 8.80899 8.96214 9.51109 10.99164 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.002413 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.559206 B =11601.959067 C =12963.305549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.134 3.866 4 N -0.589 5.589 5 C 0.247 3.753 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.511 3.489 15 O -0.542 6.542 16 C -0.140 4.140 17 C 0.074 3.926 18 O -0.314 6.314 19 C 0.144 3.856 20 C -0.196 4.196 21 C -0.067 4.067 22 C -0.078 4.078 23 Cl -0.077 7.077 24 C -0.072 4.072 25 C -0.144 4.144 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.489 -11.731 -15.990 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C 0.010 3.990 4 N -0.320 5.320 5 C 0.128 3.872 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.297 3.703 15 O -0.420 6.420 16 C -0.181 4.181 17 C -0.002 4.002 18 O -0.227 6.227 19 C 0.098 3.902 20 C -0.215 4.215 21 C -0.086 4.086 22 C -0.105 4.105 23 Cl -0.049 7.049 24 C -0.091 4.091 25 C -0.163 4.163 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.796 -11.697 -15.422 21.693 hybrid contribution 0.226 0.997 0.338 1.077 sum 10.022 -10.699 -15.083 21.034 Atomic orbital electron populations 1.23830 0.95851 1.01818 1.00353 1.23408 0.96428 0.98964 1.00101 1.20633 0.93183 0.95477 0.89682 1.48207 1.10261 1.59742 1.13797 1.19307 0.95496 0.93820 0.78559 1.21412 1.40732 0.93249 1.01282 0.92434 1.24935 0.95020 0.98803 0.95317 1.69932 1.41932 1.36208 1.05179 0.86496 0.78621 0.84921 0.77392 1.20618 1.21066 1.19875 1.19945 0.82682 0.78821 0.88863 1.90690 1.52539 1.56746 1.42065 1.21571 0.95235 1.03023 0.98241 1.22575 0.95490 0.99237 0.82848 1.85999 1.25308 1.75349 1.36062 1.19086 0.83979 0.93151 0.94001 1.21407 0.94526 1.06138 0.99416 1.20872 0.95241 0.95960 0.96543 1.20773 0.87051 1.06467 0.96214 1.98358 1.20379 1.87631 1.98512 1.20823 0.92333 0.98274 0.97668 1.20384 0.95754 1.03294 0.96871 0.88740 0.88247 0.87748 0.89301 0.90569 0.94834 0.93820 0.92668 0.88221 0.88399 0.90830 0.90690 0.83913 0.84647 0.84420 0.84223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 14.32 29.01 0.42 -1.81 16 2 C -0.17 -2.28 9.74 -36.03 -0.35 -2.63 16 3 C 0.13 2.05 5.65 -5.19 -0.03 2.02 16 4 N -0.59 -11.82 2.44 -176.43 -0.43 -12.25 16 5 C 0.25 6.27 5.16 -5.20 -0.03 6.24 16 6 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 10 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.51 9.87 7.67 -10.99 -0.08 9.79 16 15 O -0.54 -12.76 15.56 5.56 0.09 -12.67 16 16 C -0.14 -1.92 4.62 -27.88 -0.13 -2.05 16 17 C 0.07 0.98 4.03 37.16 0.15 1.12 16 18 O -0.31 -3.90 10.14 -19.48 -0.20 -4.10 16 19 C 0.14 1.67 6.69 -39.22 -0.26 1.40 16 20 C -0.20 -2.19 9.04 -39.44 -0.36 -2.55 16 21 C -0.07 -0.69 9.82 -39.57 -0.39 -1.08 16 22 C -0.08 -0.78 6.32 -39.49 -0.25 -1.02 16 23 Cl -0.08 -0.71 28.95 -51.86 -1.50 -2.21 16 24 C -0.07 -0.65 9.82 -39.57 -0.39 -1.04 16 25 C -0.14 -1.40 9.99 -39.44 -0.39 -1.80 16 26 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 27 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 28 H 0.10 1.30 7.83 -52.49 -0.41 0.89 16 29 H 0.09 1.42 7.72 -51.93 -0.40 1.02 16 30 H 0.08 0.95 6.44 -51.93 -0.33 0.61 16 31 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.10 1.21 7.40 -51.93 -0.38 0.83 16 35 H 0.10 1.14 7.78 -51.93 -0.40 0.74 16 36 H 0.07 0.99 7.61 -51.93 -0.40 0.59 16 37 H 0.07 1.05 7.63 -51.92 -0.40 0.65 16 38 H 0.14 1.58 6.30 -52.49 -0.33 1.25 16 39 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -31.79 369.35 -8.79 -40.57 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.51 Total: 0.73 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -2.52 Total: -6.68 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.31 Total: -37.69 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.11 Total: -16.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.79 -8.79 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292537898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.070 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds