Wall clock time and date at job start Tue Mar 31 2020 14:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99836 * 2 1 4 4 N 1.46500 * 109.47345 * 124.99917 * 3 2 1 5 5 C 1.46501 * 120.00083 * 270.00255 * 4 3 2 6 6 C 1.50696 * 109.46847 * 269.99542 * 5 4 3 7 7 H 1.08004 * 120.00275 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00125 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00065 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00377 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46856 * 89.99941 * 10 8 6 12 12 H 1.48493 * 109.47216 * 210.00104 * 10 8 6 13 13 H 1.48504 * 109.46561 * 330.00172 * 10 8 6 14 14 C 1.34775 * 120.00018 * 89.99665 * 4 3 2 15 15 O 1.21285 * 120.00128 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99922 * 0.02562 * 14 4 3 17 17 C 1.53004 * 109.46979 * 179.97438 * 16 14 4 18 18 S 1.81403 * 109.47028 * 180.02562 * 17 16 14 19 19 C 1.76201 * 102.99849 * 179.97438 * 18 17 16 20 20 C 1.38890 * 120.08725 * 359.95439 * 19 18 17 21 21 C 1.38129 * 119.94815 * 180.02562 * 20 19 18 22 22 C 1.38295 * 120.11144 * 0.02562 * 21 20 19 23 23 C 1.38298 * 120.17224 * 0.02562 * 22 21 20 24 24 C 1.38258 * 120.05674 * 359.97358 * 23 22 21 25 25 F 1.35106 * 120.05825 * 180.02562 * 24 23 22 26 26 H 1.07999 * 119.99939 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99778 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00120 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47299 * 5.00172 * 3 2 1 30 30 H 1.09001 * 109.46799 * 244.99818 * 3 2 1 31 31 H 1.09001 * 109.47010 * 29.99380 * 5 4 3 32 32 H 1.09002 * 109.47241 * 149.99803 * 5 4 3 33 33 H 0.96994 * 120.00381 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.46924 * 60.00164 * 16 14 4 35 35 H 1.08999 * 109.47011 * 299.99913 * 16 14 4 36 36 H 1.09000 * 109.47073 * 60.00360 * 17 16 14 37 37 H 1.08999 * 109.47263 * 299.99863 * 17 16 14 38 38 H 1.08004 * 120.02607 * 0.04536 * 20 19 18 39 39 H 1.07999 * 119.94866 * 180.27536 * 21 20 19 40 40 H 1.07997 * 119.90794 * 179.97438 * 22 21 20 41 41 H 1.08007 * 119.97156 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8650 2.4249 6 6 2.8442 3.3437 2.4804 7 1 3.3032 3.8372 1.6364 8 6 2.5184 4.0668 3.6081 9 7 1.9589 3.4661 4.6357 10 14 2.8715 5.8999 3.6768 11 1 1.6985 6.6496 3.1597 12 1 3.1351 6.3010 5.0820 13 1 4.0615 6.2062 2.8429 14 6 4.2497 0.8663 0.9824 15 8 5.0197 0.8881 1.9192 16 6 4.6972 0.3184 -0.3482 17 6 6.1537 -0.1392 -0.2475 18 16 6.6927 -0.7980 -1.8494 19 6 8.3638 -1.2655 -1.5437 20 6 8.9212 -1.0750 -0.2859 21 6 10.2317 -1.4420 -0.0495 22 6 10.9900 -1.9984 -1.0634 23 6 10.4402 -2.1892 -2.3180 24 6 9.1292 -1.8244 -2.5623 25 9 8.5919 -2.0113 -3.7878 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.4887 1.6967 2.5459 32 1 3.0989 1.3604 3.2260 33 1 1.7293 3.9748 5.4289 34 1 4.6126 1.0953 -1.1080 35 1 4.0681 -0.5283 -0.6227 36 1 6.2388 -0.9160 0.5124 37 1 6.7826 0.7078 0.0268 38 1 8.3302 -0.6406 0.5069 39 1 10.6637 -1.2980 0.9298 40 1 12.0144 -2.2838 -0.8751 41 1 11.0355 -2.6236 -3.1076 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292599845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:46 Heat of formation + Delta-G solvation = -37.663702 kcal Electronic energy + Delta-G solvation = -23699.077883 eV Core-core repulsion = 20006.216883 eV Total energy + Delta-G solvation = -3692.860999 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.08696 -39.25766 -39.02698 -35.79498 -33.43422 -32.73433 -32.08737 -31.50440 -30.66457 -27.85007 -25.69994 -24.78576 -23.42445 -22.92188 -21.99128 -19.98979 -18.58180 -18.13377 -17.26163 -16.75837 -16.53946 -16.42640 -15.89576 -15.63293 -15.46508 -15.24902 -14.59923 -14.40794 -14.29479 -13.95366 -13.55511 -13.41986 -12.97121 -12.72250 -12.57412 -12.30872 -12.22118 -12.17494 -11.71541 -11.46164 -11.33841 -11.27215 -11.04011 -10.92223 -10.62965 -10.36366 -10.22284 -10.10338 -9.68682 -9.22462 -9.13866 -9.03778 -8.46932 -7.77032 -7.60311 -6.07884 -4.12922 0.76141 0.88020 1.23187 2.19492 2.41651 3.23813 3.27135 3.28609 3.34723 3.39494 3.94087 3.94574 4.41649 4.42993 4.62837 4.72005 4.88988 4.93867 4.97755 5.01668 5.21172 5.26911 5.32825 5.35216 5.47163 5.61856 5.67152 5.72148 5.74197 5.83586 5.87072 5.98512 6.08982 6.15610 6.51306 6.76257 6.86905 7.02679 7.39314 7.47842 7.88051 8.18846 8.31450 8.83389 8.98861 9.52260 11.00250 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.002829 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.167758 B = 9896.704462 C =11208.146435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.134 3.866 4 N -0.590 5.590 5 C 0.247 3.753 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.512 3.488 15 O -0.541 6.541 16 C -0.127 4.127 17 C -0.090 4.090 18 S -0.099 6.099 19 C -0.118 4.118 20 C -0.105 4.105 21 C -0.108 4.108 22 C -0.101 4.101 23 C -0.138 4.138 24 C 0.110 3.890 25 F -0.131 7.131 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.755 -11.623 -14.224 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C 0.010 3.990 4 N -0.321 5.321 5 C 0.128 3.872 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.296 3.704 15 O -0.419 6.419 16 C -0.169 4.169 17 C -0.239 4.239 18 S 0.147 5.853 19 C -0.232 4.232 20 C -0.129 4.129 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.158 4.158 24 C 0.085 3.915 25 F -0.109 7.109 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.283 -11.599 -14.562 21.268 hybrid contribution 0.710 1.046 1.031 1.631 sum 10.993 -10.552 -13.532 20.379 Atomic orbital electron populations 1.23828 0.95848 1.01809 1.00368 1.23410 0.96433 0.98964 1.00088 1.20622 0.93189 0.95470 0.89678 1.48211 1.10306 1.59835 1.13734 1.19298 0.95467 0.93793 0.78617 1.21423 1.40664 0.93274 1.01284 0.92435 1.24934 0.95033 0.98777 0.95315 1.69931 1.41965 1.36182 1.05212 0.86503 0.78631 0.84961 0.77374 1.20618 1.21073 1.19872 1.20042 0.82564 0.78746 0.89008 1.90678 1.52580 1.56660 1.41936 1.21432 0.94254 1.02816 0.98368 1.23485 0.99784 1.04822 0.95763 1.85546 1.04909 1.76030 1.18857 1.21908 0.99071 1.05436 0.96769 1.21264 0.96418 1.00261 0.94989 1.21184 0.93610 0.98237 0.99806 1.21051 1.00266 0.98783 0.92086 1.21065 0.93222 1.02568 0.98979 1.17109 0.92210 1.02206 0.80003 1.91518 1.86237 1.92996 1.40174 0.88254 0.88739 0.87758 0.89316 0.90656 0.94880 0.93844 0.92684 0.88323 0.88470 0.88385 0.88256 0.84271 0.84841 0.84815 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 14.32 29.01 0.42 -1.86 16 2 C -0.17 -2.33 9.74 -36.03 -0.35 -2.68 16 3 C 0.13 2.09 5.65 -5.19 -0.03 2.06 16 4 N -0.59 -11.96 2.44 -176.43 -0.43 -12.40 16 5 C 0.25 6.32 5.16 -5.20 -0.03 6.30 16 6 C -0.53 -14.67 9.39 -34.44 -0.32 -15.00 16 7 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 10 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.51 10.00 7.67 -10.99 -0.08 9.91 16 15 O -0.54 -12.80 15.56 5.55 0.09 -12.71 16 16 C -0.13 -1.76 4.26 -27.88 -0.12 -1.88 16 17 C -0.09 -1.20 3.62 37.16 0.13 -1.06 16 18 S -0.10 -1.25 21.53 -107.50 -2.31 -3.56 16 19 C -0.12 -1.44 6.11 -39.01 -0.24 -1.68 16 20 C -0.11 -1.17 9.36 -39.38 -0.37 -1.54 16 21 C -0.11 -0.97 10.04 -39.60 -0.40 -1.37 16 22 C -0.10 -0.80 10.04 -39.54 -0.40 -1.20 16 23 C -0.14 -1.25 10.02 -39.55 -0.40 -1.64 16 24 C 0.11 1.28 7.28 -39.24 -0.29 1.00 16 25 F -0.13 -1.64 16.76 2.25 0.04 -1.60 16 26 H 0.10 1.24 7.84 -52.49 -0.41 0.82 16 27 H 0.09 1.03 8.06 -52.48 -0.42 0.61 16 28 H 0.10 1.34 7.83 -52.49 -0.41 0.93 16 29 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 30 H 0.08 0.97 6.44 -51.93 -0.33 0.63 16 31 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.10 1.23 7.40 -51.93 -0.38 0.85 16 35 H 0.10 1.17 7.78 -51.93 -0.40 0.76 16 36 H 0.10 1.32 7.71 -51.92 -0.40 0.92 16 37 H 0.10 1.39 7.70 -51.92 -0.40 0.99 16 38 H 0.14 1.54 5.88 -52.48 -0.31 1.24 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 41 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -32.49 368.71 -9.41 -41.90 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.50 Total: 0.79 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -2.56 Total: -9.00 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.31 Total: -37.95 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -2.31 Total: -3.56 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.49 -9.41 -41.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292599845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.240 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds