Wall clock time and date at job start Tue Mar 31 2020 13:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99385 * 2 1 4 4 N 1.46503 * 109.47196 * 125.00404 * 3 2 1 5 5 C 1.46499 * 119.99793 * 264.89199 * 4 3 2 6 6 C 1.50696 * 109.47046 * 263.17097 * 5 4 3 7 7 H 1.07993 * 120.00016 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99962 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00259 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00145 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47252 * 90.00045 * 10 8 6 12 12 H 1.48497 * 109.47316 * 210.00122 * 10 8 6 13 13 H 1.48498 * 109.47344 * 330.00317 * 10 8 6 14 14 C 1.34777 * 120.00069 * 84.88859 * 4 3 2 15 15 O 1.21375 * 120.00087 * 3.95225 * 14 4 3 16 16 C 1.49259 * 120.00103 * 183.67606 * 14 4 3 17 17 O 1.21422 * 119.99992 * 355.03314 * 16 14 4 18 18 N 1.34774 * 120.00454 * 175.02729 * 16 14 4 19 19 C 1.39423 * 120.00205 * 180.02562 * 18 16 14 20 20 S 1.76190 * 126.07902 * 359.69557 * 19 18 16 21 21 C 1.70948 * 90.33264 * 179.97438 * 20 19 18 22 22 N 1.28971 * 110.33051 * 0.31174 * 21 20 19 23 23 C 1.31793 * 117.20341 * 359.75745 * 22 21 20 24 24 C 1.50697 * 122.85174 * 180.02562 * 23 22 21 25 25 C 1.53004 * 109.47163 * 269.97128 * 24 23 22 26 26 H 1.08001 * 119.99906 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00396 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00396 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47764 * 4.99997 * 3 2 1 30 30 H 1.09006 * 109.46603 * 244.99722 * 3 2 1 31 31 H 1.09001 * 109.47161 * 23.17534 * 5 4 3 32 32 H 1.08998 * 109.46880 * 143.17201 * 5 4 3 33 33 H 0.96997 * 120.00791 * 179.97438 * 9 8 6 34 34 H 0.97007 * 119.99904 * 0.02562 * 18 16 14 35 35 H 1.08002 * 124.83884 * 180.10394 * 21 20 19 36 36 H 1.09000 * 109.47686 * 29.97402 * 24 23 22 37 37 H 1.09004 * 109.47075 * 149.97691 * 24 23 22 38 38 H 1.09001 * 109.47015 * 180.02562 * 25 24 23 39 39 H 1.09000 * 109.47042 * 300.00668 * 25 24 23 40 40 H 1.08994 * 109.47166 * 60.00281 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5969 1.9660 2.3911 6 6 3.1298 3.3750 2.4341 7 1 3.7060 3.7598 1.6058 8 6 2.8808 4.1730 3.5305 9 7 2.1786 3.7045 4.5390 10 14 3.5407 5.9197 3.5835 11 1 2.5399 6.8451 2.9939 12 1 3.8032 6.3071 4.9928 13 1 4.8035 5.9956 2.8058 14 6 4.2146 0.7735 1.0133 15 8 4.5705 0.3121 -0.0514 16 6 5.1314 0.7280 2.1903 17 8 4.8147 1.2730 3.2280 18 7 6.3108 0.0817 2.1012 19 6 7.1669 0.0387 3.2008 20 16 6.8734 0.7761 4.7738 21 6 8.3777 0.1931 5.3390 22 7 8.9826 -0.4628 4.4077 23 6 8.3667 -0.5678 3.2473 24 6 8.9561 -1.3054 2.0728 25 6 9.7883 -0.3381 1.2285 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4027 -0.9314 31 1 1.5093 1.9865 2.4607 32 1 3.0038 1.3980 3.2276 33 1 2.0037 4.2657 5.3105 34 1 6.5640 -0.3535 1.2721 35 1 8.7677 0.3541 6.3332 36 1 9.5929 -2.1133 2.4333 37 1 8.1527 -1.7202 1.4639 38 1 10.2142 -0.8716 0.3787 39 1 9.1515 0.4697 0.8679 40 1 10.5916 0.0767 1.8372 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293135004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:40 Heat of formation + Delta-G solvation = 12.260993 kcal Electronic energy + Delta-G solvation = -25292.429495 eV Core-core repulsion = 21621.653355 eV Total energy + Delta-G solvation = -3670.776141 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65787 -39.64376 -38.20130 -36.08909 -34.84435 -33.44267 -33.08947 -32.16808 -28.75422 -27.63659 -26.61733 -25.27658 -23.58403 -23.20707 -22.50582 -20.50096 -19.80072 -19.04861 -17.77834 -17.25750 -16.64499 -16.54754 -15.89486 -15.50619 -15.36541 -14.75831 -14.66727 -14.44652 -14.09084 -13.81448 -13.75789 -13.60666 -13.06482 -12.79210 -12.39115 -12.31566 -11.94515 -11.80082 -11.66652 -11.27202 -11.20912 -11.07543 -10.97919 -10.93201 -10.77383 -10.54715 -10.11832 -9.78218 -9.47964 -9.27716 -8.87042 -8.78684 -8.38534 -8.05788 -7.87021 -6.10790 -4.14541 0.85190 1.35030 1.91507 2.02587 2.34389 2.79941 2.94474 3.25494 3.32794 3.36186 3.66539 4.01514 4.38475 4.39888 4.80627 4.96932 5.12692 5.18725 5.25647 5.31549 5.36255 5.37358 5.58245 5.72153 5.82598 5.97358 6.00321 6.05928 6.13222 6.20158 6.40739 6.48260 6.76688 6.89648 7.03690 7.27855 7.32696 7.76595 7.92323 7.94297 8.03451 8.11773 8.43605 8.86646 9.49199 10.97735 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.010189 B = 0.005253 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.497403 B = 5329.502066 C = 7158.252220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.141 3.859 4 N -0.551 5.551 5 C 0.221 3.779 6 C -0.524 4.524 7 H 0.054 0.946 8 C 0.072 3.928 9 N -0.886 5.886 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.275 1.275 14 C 0.515 3.485 15 O -0.556 6.556 16 C 0.482 3.518 17 O -0.421 6.421 18 N -0.613 5.613 19 C 0.010 3.990 20 S 0.256 5.744 21 C -0.060 4.060 22 N -0.448 5.448 23 C 0.000 4.000 24 C -0.041 4.041 25 C -0.147 4.147 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.263 0.737 34 H 0.423 0.577 35 H 0.194 0.806 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.542 -8.596 -3.695 11.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.180 4.180 3 C 0.018 3.982 4 N -0.280 5.280 5 C 0.102 3.898 6 C -0.562 4.562 7 H 0.073 0.927 8 C -0.131 4.131 9 N -0.525 5.525 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.210 1.210 13 H -0.200 1.200 14 C 0.296 3.704 15 O -0.437 6.437 16 C 0.263 3.737 17 O -0.289 6.289 18 N -0.262 5.262 19 C -0.210 4.210 20 S 0.507 5.493 21 C -0.358 4.358 22 N -0.162 5.162 23 C -0.137 4.137 24 C -0.082 4.082 25 C -0.205 4.205 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.263 0.737 35 H 0.210 0.790 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.020 -7.941 -2.703 10.325 hybrid contribution 0.808 0.436 -0.827 1.235 sum 6.828 -7.505 -3.530 10.743 Atomic orbital electron populations 1.23815 0.95694 1.01832 1.00859 1.23303 0.96157 0.98970 0.99599 1.20628 0.92052 0.95494 0.89995 1.48287 1.11738 1.51381 1.16587 1.20165 0.96661 0.93708 0.79233 1.21206 1.34754 0.96729 1.03554 0.92733 1.24791 0.94889 0.98288 0.95138 1.69910 1.38810 1.36642 1.07098 0.86598 0.79363 0.84660 0.77412 1.20660 1.20982 1.19994 1.19333 0.83259 0.80504 0.87269 1.90682 1.75459 1.49336 1.28203 1.20758 0.82338 0.80100 0.90520 1.90908 1.70145 1.38524 1.29372 1.42629 1.16753 1.53514 1.13309 1.23578 0.95599 1.06557 0.95244 1.85410 1.15963 1.47909 1.00023 1.28449 0.99869 1.03896 1.03546 1.66122 1.33911 1.16702 0.99420 1.19995 0.91576 1.06474 0.95624 1.19958 0.99221 0.97312 0.91662 1.21750 1.00116 0.99337 0.99265 0.88622 0.88252 0.87591 0.88944 0.89706 0.94733 0.90732 0.92707 0.73693 0.78962 0.90071 0.91105 0.92134 0.92689 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 14.32 29.01 0.42 -1.98 16 2 C -0.16 -2.41 9.81 -36.02 -0.35 -2.76 16 3 C 0.14 2.39 5.80 -5.19 -0.03 2.36 16 4 N -0.55 -11.17 2.47 -177.02 -0.44 -11.61 16 5 C 0.22 5.25 4.74 -5.20 -0.02 5.22 16 6 C -0.52 -13.73 8.34 -34.44 -0.29 -14.01 16 7 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 8 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 9 N -0.89 -24.73 13.29 55.43 0.74 -24.00 16 10 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.51 10.20 7.62 -11.68 -0.09 10.11 16 15 O -0.56 -10.89 16.12 5.47 0.09 -10.80 16 16 C 0.48 9.34 7.73 -11.68 -0.09 9.25 16 17 O -0.42 -9.31 10.00 5.43 0.05 -9.26 16 18 N -0.61 -9.90 5.38 -11.10 -0.06 -9.96 16 19 C 0.01 0.15 7.17 -15.41 -0.11 0.04 16 20 S 0.26 4.12 20.45 -107.50 -2.20 1.92 16 21 C -0.06 -0.83 12.21 51.56 0.63 -0.20 16 22 N -0.45 -6.74 10.53 -11.72 -0.12 -6.87 16 23 C 0.00 0.00 6.03 -83.93 -0.51 -0.51 16 24 C -0.04 -0.48 6.12 -27.88 -0.17 -0.65 16 25 C -0.15 -1.58 9.90 37.16 0.37 -1.21 16 26 H 0.10 1.07 8.06 -52.49 -0.42 0.64 16 27 H 0.10 1.23 7.84 -52.49 -0.41 0.82 16 28 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.09 1.53 7.68 -51.93 -0.40 1.13 16 30 H 0.08 1.40 7.53 -51.93 -0.39 1.01 16 31 H 0.03 0.86 8.02 -51.93 -0.42 0.44 16 32 H 0.08 1.92 5.38 -51.93 -0.28 1.64 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.42 5.92 7.10 -40.82 -0.29 5.63 16 35 H 0.19 1.97 8.06 -52.49 -0.42 1.54 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.73 7.22 -51.93 -0.37 0.35 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -30.03 357.97 -6.98 -37.00 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.07 Total: 4.65 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -0.35 Total: 7.51 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.12 Total: -52.43 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.14 Total: -20.06 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -2.20 Total: 1.92 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.03 -6.98 -37.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293135004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.265 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds