Wall clock time and date at job start Tue Mar 31 2020 13:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99385 * 2 1 4 4 N 1.46503 * 109.47196 * 125.00404 * 3 2 1 5 5 C 1.46499 * 119.99793 * 264.89199 * 4 3 2 6 6 C 1.50696 * 109.47046 * 263.17097 * 5 4 3 7 7 H 1.07993 * 120.00016 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99962 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00259 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00145 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47252 * 90.00045 * 10 8 6 12 12 H 1.48497 * 109.47316 * 210.00122 * 10 8 6 13 13 H 1.48498 * 109.47344 * 330.00317 * 10 8 6 14 14 C 1.34777 * 120.00069 * 84.88859 * 4 3 2 15 15 O 1.21375 * 120.00087 * 3.95225 * 14 4 3 16 16 C 1.49259 * 120.00103 * 183.67606 * 14 4 3 17 17 O 1.21422 * 119.99992 * 355.03314 * 16 14 4 18 18 N 1.34774 * 120.00454 * 175.02729 * 16 14 4 19 19 C 1.39423 * 120.00205 * 180.02562 * 18 16 14 20 20 S 1.76190 * 126.07902 * 359.69557 * 19 18 16 21 21 C 1.70948 * 90.33264 * 179.97438 * 20 19 18 22 22 N 1.28971 * 110.33051 * 0.31174 * 21 20 19 23 23 C 1.31793 * 117.20341 * 359.75745 * 22 21 20 24 24 C 1.50697 * 122.85174 * 180.02562 * 23 22 21 25 25 C 1.53004 * 109.47163 * 269.97128 * 24 23 22 26 26 H 1.08001 * 119.99906 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00396 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00396 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47764 * 4.99997 * 3 2 1 30 30 H 1.09006 * 109.46603 * 244.99722 * 3 2 1 31 31 H 1.09001 * 109.47161 * 23.17534 * 5 4 3 32 32 H 1.08998 * 109.46880 * 143.17201 * 5 4 3 33 33 H 0.96997 * 120.00791 * 179.97438 * 9 8 6 34 34 H 0.97007 * 119.99904 * 0.02562 * 18 16 14 35 35 H 1.08002 * 124.83884 * 180.10394 * 21 20 19 36 36 H 1.09000 * 109.47686 * 29.97402 * 24 23 22 37 37 H 1.09004 * 109.47075 * 149.97691 * 24 23 22 38 38 H 1.09001 * 109.47015 * 180.02562 * 25 24 23 39 39 H 1.09000 * 109.47042 * 300.00668 * 25 24 23 40 40 H 1.08994 * 109.47166 * 60.00281 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5969 1.9660 2.3911 6 6 3.1298 3.3750 2.4341 7 1 3.7060 3.7598 1.6058 8 6 2.8808 4.1730 3.5305 9 7 2.1786 3.7045 4.5390 10 14 3.5407 5.9197 3.5835 11 1 2.5399 6.8451 2.9939 12 1 3.8032 6.3071 4.9928 13 1 4.8035 5.9956 2.8058 14 6 4.2146 0.7735 1.0133 15 8 4.5705 0.3121 -0.0514 16 6 5.1314 0.7280 2.1903 17 8 4.8147 1.2730 3.2280 18 7 6.3108 0.0817 2.1012 19 6 7.1669 0.0387 3.2008 20 16 6.8734 0.7761 4.7738 21 6 8.3777 0.1931 5.3390 22 7 8.9826 -0.4628 4.4077 23 6 8.3667 -0.5678 3.2473 24 6 8.9561 -1.3054 2.0728 25 6 9.7883 -0.3381 1.2285 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4027 -0.9314 31 1 1.5093 1.9865 2.4607 32 1 3.0038 1.3980 3.2276 33 1 2.0037 4.2657 5.3105 34 1 6.5640 -0.3535 1.2721 35 1 8.7677 0.3541 6.3332 36 1 9.5929 -2.1133 2.4333 37 1 8.1527 -1.7202 1.4639 38 1 10.2142 -0.8716 0.3787 39 1 9.1515 0.4697 0.8679 40 1 10.5916 0.0767 1.8372 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293135004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:40 Heat of formation + Delta-G solvation = -6.573378 kcal Electronic energy + Delta-G solvation = -25293.246215 eV Core-core repulsion = 21621.653355 eV Total energy + Delta-G solvation = -3671.592860 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.11769 -40.90128 -39.68648 -37.62283 -36.16920 -35.06174 -34.16556 -33.82922 -29.97065 -29.44323 -28.02564 -26.50173 -25.29722 -24.19622 -24.10279 -21.85210 -20.99964 -20.33853 -19.19890 -18.79174 -18.33067 -17.96706 -17.34290 -17.03820 -16.83773 -16.26295 -16.06634 -15.93264 -15.27226 -14.99652 -14.94049 -14.70038 -14.57346 -14.30517 -14.10441 -13.64735 -13.28347 -13.10386 -12.91681 -12.85907 -12.76649 -12.45842 -12.41097 -12.27550 -12.12666 -11.93341 -11.81816 -11.66192 -10.86829 -10.56008 -10.44445 -10.12383 -10.04033 -9.68607 -9.14624 -8.14939 -6.24305 -0.40492 0.15228 0.45299 0.79262 1.13472 1.38386 1.40767 1.49048 1.52188 1.74696 2.16018 2.39649 2.59645 3.18754 3.28377 3.35047 3.92457 4.00168 4.13482 4.14758 4.35048 4.43064 4.45210 4.64291 4.74832 4.76984 4.80098 5.00855 5.01290 5.12066 5.20706 5.36218 5.38045 5.43924 5.66164 5.73899 5.76509 5.85104 6.09368 6.23420 6.56420 6.74327 6.78033 6.93522 7.42389 8.92969 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.010189 B = 0.005253 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.497403 B = 5329.502066 C = 7158.252220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.185 4.185 3 C 0.138 3.862 4 N -0.557 5.557 5 C 0.240 3.760 6 C -0.527 4.527 7 H 0.044 0.956 8 C 0.028 3.972 9 N -0.915 5.915 10 Si 0.946 3.054 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.278 1.278 14 C 0.513 3.487 15 O -0.554 6.554 16 C 0.480 3.520 17 O -0.456 6.456 18 N -0.597 5.597 19 C -0.018 4.018 20 S 0.203 5.797 21 C -0.028 4.028 22 N -0.465 5.465 23 C 0.015 3.985 24 C -0.045 4.045 25 C -0.142 4.142 26 H 0.120 0.880 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.021 0.979 32 H 0.057 0.943 33 H 0.264 0.736 34 H 0.433 0.567 35 H 0.230 0.770 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.508 -9.200 -4.294 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.204 4.204 3 C 0.017 3.983 4 N -0.286 5.286 5 C 0.120 3.880 6 C -0.566 4.566 7 H 0.062 0.938 8 C -0.172 4.172 9 N -0.554 5.554 10 Si 0.772 3.228 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.203 1.203 14 C 0.295 3.705 15 O -0.435 6.435 16 C 0.261 3.739 17 O -0.327 6.327 18 N -0.247 5.247 19 C -0.236 4.236 20 S 0.454 5.546 21 C -0.325 4.325 22 N -0.178 5.178 23 C -0.122 4.122 24 C -0.084 4.084 25 C -0.200 4.200 26 H 0.138 0.862 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.274 0.726 35 H 0.246 0.754 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.004 -8.570 -3.349 11.564 hybrid contribution 0.598 0.529 -0.636 1.021 sum 7.602 -8.041 -3.985 11.762 Atomic orbital electron populations 1.24077 0.94997 1.03292 0.97433 1.23136 0.96791 0.97736 1.02690 1.20781 0.91782 0.96909 0.88842 1.48236 1.12555 1.51391 1.16391 1.19670 0.95272 0.92653 0.80385 1.21369 1.34186 0.97900 1.03099 0.93780 1.25453 0.95208 1.01596 0.94932 1.70002 1.39983 1.37856 1.07596 0.85749 0.78738 0.80931 0.77380 1.19571 1.20654 1.20311 1.19451 0.83218 0.80324 0.87506 1.90667 1.75378 1.49295 1.28163 1.20712 0.83019 0.80200 0.89932 1.90904 1.71180 1.40362 1.30240 1.42353 1.15799 1.52672 1.13844 1.23589 0.96412 1.08590 0.94963 1.85621 1.18247 1.49259 1.01477 1.29021 0.97814 1.01226 1.04448 1.66245 1.34076 1.17654 0.99856 1.20518 0.90649 1.04764 0.96224 1.20144 0.99947 0.97515 0.90838 1.21716 0.99502 0.98998 0.99789 0.86215 0.87639 0.87751 0.88954 0.89451 0.96080 0.92581 0.92649 0.72558 0.75372 0.88870 0.89727 0.89671 0.93846 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 14.32 67.78 0.97 -2.90 16 2 C -0.18 -5.38 9.81 25.65 0.25 -5.13 16 3 C 0.14 4.70 5.80 85.63 0.50 5.20 16 4 N -0.56 -22.97 2.47 -832.31 -2.06 -25.02 16 5 C 0.24 11.74 4.74 85.63 0.41 12.15 16 6 C -0.53 -28.15 8.34 25.60 0.21 -27.94 16 7 H 0.04 2.40 7.81 -2.91 -0.02 2.37 16 8 C 0.03 1.54 5.46 84.65 0.46 2.00 16 9 N -0.92 -51.90 13.29 21.45 0.28 -51.62 16 10 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 C 0.51 20.57 7.62 87.21 0.66 21.24 16 15 O -0.55 -21.54 16.12 -3.33 -0.05 -21.60 16 16 C 0.48 19.01 7.73 87.21 0.67 19.69 16 17 O -0.46 -20.87 10.00 -3.47 -0.03 -20.91 16 18 N -0.60 -19.28 5.38 -307.36 -1.65 -20.93 16 19 C -0.02 -0.56 7.17 82.63 0.59 0.04 16 20 S 0.20 6.55 20.45 -56.49 -1.16 5.40 16 21 C -0.03 -0.71 12.21 130.66 1.60 0.89 16 22 N -0.46 -13.12 10.53 -190.99 -2.01 -15.13 16 23 C 0.01 0.42 6.03 41.71 0.25 0.67 16 24 C -0.04 -0.93 6.12 29.85 0.18 -0.75 16 25 C -0.14 -2.76 9.90 71.98 0.71 -2.04 16 26 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 27 H 0.11 2.42 7.84 -2.91 -0.02 2.40 16 28 H 0.10 3.07 8.06 -2.91 -0.02 3.04 16 29 H 0.09 3.08 7.68 -2.39 -0.02 3.06 16 30 H 0.09 2.88 7.53 -2.38 -0.02 2.86 16 31 H 0.02 1.08 8.02 -2.39 -0.02 1.06 16 32 H 0.06 3.01 5.38 -2.43 -0.01 3.00 16 33 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.43 11.84 7.10 -92.70 -0.66 11.19 16 35 H 0.23 4.00 8.06 -2.91 -0.02 3.98 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 1.55 7.22 -2.38 -0.02 1.53 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -64.49 357.97 3.23 -61.25 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.41 Total: 20.05 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 7.47 Total: 23.10 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -5.44 Total: -112.70 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -0.09 Total: -42.50 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 6.55 SS G_CDS: -1.16 Total: 5.40 kcal Total: -64.49 3.23 -61.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293135004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.679 kcal (2) G-P(sol) polarization free energy of solvation -64.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds