Wall clock time and date at job start Tue Mar 31 2020 13:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00056 * 2 1 4 4 N 1.46508 * 109.47014 * 124.99711 * 3 2 1 5 5 C 1.46500 * 120.00077 * 274.94622 * 4 3 2 6 6 C 1.50689 * 109.47182 * 263.11416 * 5 4 3 7 7 H 1.08003 * 120.00080 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00089 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99923 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99917 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47378 * 59.99803 * 10 8 6 12 12 H 1.48501 * 109.47075 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47160 * 299.99693 * 10 8 6 14 14 C 1.34776 * 119.99631 * 94.94368 * 4 3 2 15 15 O 1.21363 * 120.00673 * 3.69000 * 14 4 3 16 16 C 1.49308 * 119.99586 * 183.68856 * 14 4 3 17 17 O 1.21376 * 120.00361 * 354.26737 * 16 14 4 18 18 N 1.34781 * 119.99887 * 174.26738 * 16 14 4 19 19 C 1.38742 * 120.00114 * 180.02562 * 18 16 14 20 20 N 1.29685 * 124.94513 * 359.97353 * 19 18 16 21 21 C 1.31915 * 116.92736 * 179.97438 * 20 19 18 22 22 C 1.33520 * 114.56538 * 0.02562 * 21 20 19 23 23 C 1.50705 * 125.97004 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.46860 * 90.00004 * 23 22 21 25 25 S 1.70971 * 124.94493 * 180.26676 * 19 18 16 26 26 H 1.07996 * 120.00430 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99868 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99692 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47463 * 5.00381 * 3 2 1 30 30 H 1.09000 * 109.47057 * 244.99696 * 3 2 1 31 31 H 1.09003 * 109.46917 * 23.11567 * 5 4 3 32 32 H 1.09000 * 109.46681 * 143.11175 * 5 4 3 33 33 H 0.96999 * 119.99956 * 180.02562 * 9 8 6 34 34 H 0.97002 * 119.99956 * 0.02562 * 18 16 14 35 35 H 1.08001 * 122.71069 * 180.02562 * 21 20 19 36 36 H 1.08999 * 109.47276 * 329.99591 * 23 22 21 37 37 H 1.09002 * 109.47109 * 210.00086 * 23 22 21 38 38 H 1.09003 * 109.46716 * 180.02562 * 24 23 22 39 39 H 1.09000 * 109.47446 * 60.00515 * 24 23 22 40 40 H 1.08999 * 109.47323 * 299.99433 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5287 1.7632 2.4521 6 6 2.8689 3.2172 2.6542 7 1 3.3807 3.7652 1.8769 8 6 2.5276 3.8478 3.8319 9 7 1.9048 3.1805 4.7786 10 14 2.9499 5.6501 4.0827 11 1 2.2855 6.4648 3.0339 12 1 2.4784 6.0874 5.4212 13 1 4.4211 5.8310 3.9921 14 6 4.2773 0.9596 0.9575 15 8 4.6795 0.6664 -0.1494 16 6 5.2046 0.9079 2.1266 17 8 4.8331 1.2996 3.2137 18 7 6.4542 0.4262 1.9748 19 6 7.3157 0.3776 3.0613 20 7 7.0202 0.7693 4.2617 21 6 7.9621 0.6508 5.1776 22 6 9.1094 0.1347 4.7304 23 6 10.3488 -0.1120 5.5516 24 6 10.2950 -1.5210 6.1455 25 16 8.9239 -0.2007 3.0108 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 1.4489 1.6300 2.5184 32 1 3.0164 1.1654 3.2221 33 1 1.6644 3.6242 5.6070 34 1 6.7512 0.1134 1.1059 35 1 7.8169 0.9473 6.2059 36 1 10.4024 0.6202 6.3574 37 1 11.2299 -0.0186 4.9168 38 1 11.1911 -1.6992 6.7398 39 1 10.2415 -2.2531 5.3397 40 1 9.4139 -1.6143 6.7804 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293248910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:34 Heat of formation + Delta-G solvation = 22.876295 kcal Electronic energy + Delta-G solvation = -24823.065831 eV Core-core repulsion = 21152.750004 eV Total energy + Delta-G solvation = -3670.315827 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.57034 -39.41070 -37.86794 -36.01778 -34.96211 -33.71395 -33.21049 -32.06989 -28.55988 -27.55627 -26.68985 -25.32515 -23.65600 -22.98315 -22.25360 -20.62856 -19.55423 -19.21844 -18.00037 -16.88931 -16.55990 -16.44286 -15.85078 -15.49394 -15.16920 -14.75440 -14.53812 -14.45529 -14.28025 -14.03685 -13.74861 -13.45172 -12.91976 -12.78293 -12.42797 -12.27425 -11.78301 -11.76286 -11.67766 -11.52912 -11.18180 -10.96585 -10.91213 -10.82948 -10.55565 -10.40563 -10.01393 -9.71100 -9.52654 -9.19709 -9.16135 -8.64642 -8.24998 -8.06066 -7.86326 -6.00667 -4.03848 0.79824 1.00898 1.69852 2.09064 2.41311 2.88818 3.09015 3.34579 3.38611 3.42133 3.85714 3.93598 4.45775 4.65934 4.77132 4.87388 5.07166 5.12154 5.26360 5.36237 5.41229 5.43413 5.56747 5.66802 5.80200 5.90572 5.98461 6.05228 6.07262 6.21648 6.41694 6.58316 6.83089 6.97081 7.04456 7.35805 7.41838 7.86291 7.97056 8.07191 8.19918 8.33384 8.58519 8.96598 9.59367 11.08195 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.011346 B = 0.004215 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.293540 B = 6641.006872 C = 8374.886422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.138 3.862 4 N -0.552 5.552 5 C 0.223 3.777 6 C -0.524 4.524 7 H 0.053 0.947 8 C 0.073 3.927 9 N -0.886 5.886 10 Si 0.894 3.106 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.513 3.487 15 O -0.561 6.561 16 C 0.480 3.520 17 O -0.378 6.378 18 N -0.623 5.623 19 C 0.285 3.715 20 N -0.471 5.471 21 C 0.076 3.924 22 C -0.250 4.250 23 C -0.037 4.037 24 C -0.149 4.149 25 S 0.103 5.897 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.263 0.737 34 H 0.426 0.574 35 H 0.176 0.824 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.232 -9.296 -2.944 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.180 4.180 3 C 0.015 3.985 4 N -0.281 5.281 5 C 0.104 3.896 6 C -0.562 4.562 7 H 0.072 0.928 8 C -0.130 4.130 9 N -0.525 5.525 10 Si 0.722 3.278 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.295 3.705 15 O -0.443 6.443 16 C 0.258 3.742 17 O -0.238 6.238 18 N -0.278 5.278 19 C -0.084 4.084 20 N -0.192 5.192 21 C -0.075 4.075 22 C -0.372 4.372 23 C -0.077 4.077 24 C -0.207 4.207 25 S 0.353 5.647 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.265 0.735 35 H 0.193 0.807 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.982 -9.254 -3.227 15.480 hybrid contribution 0.091 1.187 0.689 1.375 sum 12.073 -8.067 -2.538 14.740 Atomic orbital electron populations 1.23807 0.95707 1.01810 1.00793 1.23285 0.96180 0.98870 0.99666 1.20629 0.92184 0.95423 0.90218 1.48282 1.07102 1.59189 1.13548 1.20118 0.96099 0.96534 0.76830 1.21160 1.38880 0.94537 1.01649 0.92836 1.24786 0.94777 0.98031 0.95447 1.69903 1.39782 1.36386 1.06385 0.86632 0.78896 0.85082 0.77206 1.20361 1.21173 1.20311 1.19585 0.83695 0.79489 0.87745 1.90653 1.76522 1.51770 1.25337 1.20625 0.82115 0.80654 0.90839 1.91056 1.71387 1.35676 1.25682 1.42915 1.11954 1.62997 1.09915 1.23625 0.93205 1.00596 0.90938 1.66621 1.32922 1.21240 0.98450 1.21606 0.87051 0.98943 0.99926 1.25644 1.02329 1.13964 0.95284 1.19877 0.92198 0.98153 0.97461 1.21815 1.02073 0.95808 1.00957 1.83736 1.08779 1.63444 1.08702 0.88646 0.88254 0.87676 0.89272 0.89293 0.94786 0.90867 0.92754 0.73513 0.80712 0.89832 0.90964 0.92203 0.92586 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 14.32 29.01 0.42 -2.11 16 2 C -0.16 -2.53 9.84 -36.03 -0.35 -2.88 16 3 C 0.14 2.46 5.90 -5.19 -0.03 2.43 16 4 N -0.55 -11.85 2.46 -177.00 -0.44 -12.28 16 5 C 0.22 5.63 4.79 -5.20 -0.02 5.61 16 6 C -0.52 -14.55 8.31 -34.44 -0.29 -14.84 16 7 H 0.05 1.50 7.81 -52.48 -0.41 1.09 16 8 C 0.07 2.07 5.46 -17.82 -0.10 1.97 16 9 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 10 Si 0.89 22.16 29.54 -169.99 -5.02 17.13 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.51 10.75 7.66 -11.65 -0.09 10.66 16 15 O -0.56 -11.42 15.98 5.49 0.09 -11.33 16 16 C 0.48 10.14 7.72 -11.65 -0.09 10.05 16 17 O -0.38 -9.48 11.00 5.47 0.06 -9.42 16 18 N -0.62 -10.65 5.39 -13.55 -0.07 -10.72 16 19 C 0.29 4.79 8.01 -87.55 -0.70 4.09 16 20 N -0.47 -9.01 8.64 -15.17 -0.13 -9.14 16 21 C 0.08 1.14 11.24 -19.17 -0.22 0.93 16 22 C -0.25 -3.02 5.84 -35.96 -0.21 -3.23 16 23 C -0.04 -0.31 6.47 -27.88 -0.18 -0.49 16 24 C -0.15 -1.15 9.89 37.16 0.37 -0.78 16 25 S 0.10 1.25 23.22 -107.50 -2.50 -1.25 16 26 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.10 1.32 7.84 -52.48 -0.41 0.91 16 28 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.09 1.57 7.76 -51.93 -0.40 1.16 16 30 H 0.09 1.53 7.24 -51.93 -0.38 1.15 16 31 H 0.03 0.89 8.02 -51.93 -0.42 0.47 16 32 H 0.07 2.04 5.41 -51.93 -0.28 1.76 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.43 5.95 8.30 -40.82 -0.34 5.61 16 35 H 0.18 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -33.21 361.84 -8.47 -41.68 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.15 Total: 3.92 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: -1.50 Total: 11.39 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.10 Total: -57.58 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.15 Total: -20.75 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.50 Total: -1.25 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.21 -8.47 -41.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293248910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.553 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds