Wall clock time and date at job start Tue Mar 31 2020 13:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00056 * 2 1 4 4 N 1.46508 * 109.47014 * 124.99711 * 3 2 1 5 5 C 1.46500 * 120.00077 * 274.94622 * 4 3 2 6 6 C 1.50689 * 109.47182 * 263.11416 * 5 4 3 7 7 H 1.08003 * 120.00080 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00089 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99923 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99917 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47378 * 59.99803 * 10 8 6 12 12 H 1.48501 * 109.47075 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47160 * 299.99693 * 10 8 6 14 14 C 1.34776 * 119.99631 * 94.94368 * 4 3 2 15 15 O 1.21363 * 120.00673 * 3.69000 * 14 4 3 16 16 C 1.49308 * 119.99586 * 183.68856 * 14 4 3 17 17 O 1.21376 * 120.00361 * 354.26737 * 16 14 4 18 18 N 1.34781 * 119.99887 * 174.26738 * 16 14 4 19 19 C 1.38742 * 120.00114 * 180.02562 * 18 16 14 20 20 N 1.29685 * 124.94513 * 359.97353 * 19 18 16 21 21 C 1.31915 * 116.92736 * 179.97438 * 20 19 18 22 22 C 1.33520 * 114.56538 * 0.02562 * 21 20 19 23 23 C 1.50705 * 125.97004 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.46860 * 90.00004 * 23 22 21 25 25 S 1.70971 * 124.94493 * 180.26676 * 19 18 16 26 26 H 1.07996 * 120.00430 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99868 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99692 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47463 * 5.00381 * 3 2 1 30 30 H 1.09000 * 109.47057 * 244.99696 * 3 2 1 31 31 H 1.09003 * 109.46917 * 23.11567 * 5 4 3 32 32 H 1.09000 * 109.46681 * 143.11175 * 5 4 3 33 33 H 0.96999 * 119.99956 * 180.02562 * 9 8 6 34 34 H 0.97002 * 119.99956 * 0.02562 * 18 16 14 35 35 H 1.08001 * 122.71069 * 180.02562 * 21 20 19 36 36 H 1.08999 * 109.47276 * 329.99591 * 23 22 21 37 37 H 1.09002 * 109.47109 * 210.00086 * 23 22 21 38 38 H 1.09003 * 109.46716 * 180.02562 * 24 23 22 39 39 H 1.09000 * 109.47446 * 60.00515 * 24 23 22 40 40 H 1.08999 * 109.47323 * 299.99433 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5287 1.7632 2.4521 6 6 2.8689 3.2172 2.6542 7 1 3.3807 3.7652 1.8769 8 6 2.5276 3.8478 3.8319 9 7 1.9048 3.1805 4.7786 10 14 2.9499 5.6501 4.0827 11 1 2.2855 6.4648 3.0339 12 1 2.4784 6.0874 5.4212 13 1 4.4211 5.8310 3.9921 14 6 4.2773 0.9596 0.9575 15 8 4.6795 0.6664 -0.1494 16 6 5.2046 0.9079 2.1266 17 8 4.8331 1.2996 3.2137 18 7 6.4542 0.4262 1.9748 19 6 7.3157 0.3776 3.0613 20 7 7.0202 0.7693 4.2617 21 6 7.9621 0.6508 5.1776 22 6 9.1094 0.1347 4.7304 23 6 10.3488 -0.1120 5.5516 24 6 10.2950 -1.5210 6.1455 25 16 8.9239 -0.2007 3.0108 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 1.4489 1.6300 2.5184 32 1 3.0164 1.1654 3.2221 33 1 1.6644 3.6242 5.6070 34 1 6.7512 0.1134 1.1059 35 1 7.8169 0.9473 6.2059 36 1 10.4024 0.6202 6.3574 37 1 11.2299 -0.0186 4.9168 38 1 11.1911 -1.6992 6.7398 39 1 10.2415 -2.2531 5.3397 40 1 9.4139 -1.6143 6.7804 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293248910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:33 Heat of formation + Delta-G solvation = 1.857465 kcal Electronic energy + Delta-G solvation = -24823.977276 eV Core-core repulsion = 21152.750004 eV Total energy + Delta-G solvation = -3671.227271 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.09249 -40.76548 -39.39409 -37.63257 -36.24023 -35.05598 -34.64601 -33.83049 -29.65484 -29.47058 -28.15349 -26.63215 -25.26041 -24.41155 -23.48821 -21.95580 -20.81968 -20.50660 -19.47244 -18.69022 -18.06920 -18.00407 -17.32113 -17.04909 -16.74498 -16.20697 -16.06261 -15.83368 -15.60763 -15.03585 -14.87796 -14.60582 -14.51766 -14.28537 -14.11335 -13.63989 -13.36366 -13.08993 -12.87108 -12.76132 -12.66067 -12.44709 -12.41880 -12.30309 -11.95010 -11.83269 -11.72419 -11.67278 -10.94578 -10.55686 -10.42449 -10.22441 -9.99165 -9.68453 -9.19986 -8.16554 -6.26050 -0.40179 -0.12908 0.51901 0.61444 1.12996 1.35368 1.39119 1.45259 1.57909 1.84843 2.26235 2.38214 2.52455 3.17314 3.17507 3.71752 3.92519 4.01717 4.13702 4.16011 4.45193 4.45503 4.59479 4.71557 4.76037 4.79917 4.88422 5.01474 5.08355 5.13631 5.22259 5.34912 5.40407 5.45651 5.65772 5.70269 5.75662 5.83758 6.07764 6.22198 6.57251 6.77399 6.91963 7.06373 7.40430 8.91683 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.011346 B = 0.004215 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.293540 B = 6641.006872 C = 8374.886422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.185 4.185 3 C 0.136 3.864 4 N -0.558 5.558 5 C 0.245 3.755 6 C -0.529 4.529 7 H 0.045 0.955 8 C 0.024 3.976 9 N -0.918 5.918 10 Si 0.952 3.048 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.285 1.285 14 C 0.512 3.488 15 O -0.555 6.555 16 C 0.481 3.519 17 O -0.429 6.429 18 N -0.611 5.611 19 C 0.235 3.765 20 N -0.521 5.521 21 C 0.038 3.962 22 C -0.224 4.224 23 C -0.039 4.039 24 C -0.147 4.147 25 S 0.194 5.806 26 H 0.120 0.880 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.021 0.979 32 H 0.048 0.952 33 H 0.264 0.736 34 H 0.439 0.561 35 H 0.183 0.817 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.204 -9.781 -3.548 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.204 4.204 3 C 0.014 3.986 4 N -0.287 5.287 5 C 0.125 3.875 6 C -0.567 4.567 7 H 0.063 0.937 8 C -0.176 4.176 9 N -0.557 5.557 10 Si 0.778 3.222 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.211 1.211 14 C 0.294 3.706 15 O -0.436 6.436 16 C 0.259 3.741 17 O -0.294 6.294 18 N -0.266 5.266 19 C -0.132 4.132 20 N -0.243 5.243 21 C -0.112 4.112 22 C -0.347 4.347 23 C -0.079 4.079 24 C -0.205 4.205 25 S 0.445 5.555 26 H 0.139 0.861 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.280 0.720 35 H 0.200 0.800 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.990 -9.765 -3.891 17.499 hybrid contribution -0.342 1.219 0.872 1.537 sum 13.648 -8.546 -3.019 16.383 Atomic orbital electron populations 1.24073 0.95041 1.03265 0.97433 1.23147 0.96833 0.97739 1.02682 1.20801 0.91880 0.96849 0.89032 1.48226 1.07935 1.59388 1.13191 1.19554 0.94682 0.95058 0.78243 1.21368 1.38215 0.95715 1.01435 0.93703 1.25538 0.94797 1.01993 0.95274 1.70012 1.40968 1.37941 1.06789 0.85715 0.78057 0.80666 0.77786 1.18740 1.20364 1.21120 1.19668 0.83646 0.79372 0.87951 1.90637 1.76373 1.51605 1.25033 1.20692 0.83193 0.80154 0.90091 1.91036 1.72714 1.38515 1.27101 1.42612 1.10936 1.62180 1.10890 1.23816 0.95599 1.03279 0.90506 1.66524 1.35757 1.21989 1.00059 1.21751 0.87777 1.01602 1.00066 1.26307 1.02443 1.09947 0.95997 1.20126 0.90823 0.99188 0.97790 1.21808 1.02791 0.94888 1.01004 1.83361 1.03842 1.60728 1.07611 0.86143 0.87754 0.87558 0.89374 0.88733 0.96079 0.93424 0.92742 0.71986 0.80020 0.88376 0.88899 0.89958 0.92754 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 14.32 67.78 0.97 -3.21 16 2 C -0.19 -5.73 9.84 25.64 0.25 -5.48 16 3 C 0.14 4.88 5.90 85.63 0.50 5.39 16 4 N -0.56 -24.66 2.46 -832.27 -2.05 -26.70 16 5 C 0.24 12.91 4.79 85.63 0.41 13.32 16 6 C -0.53 -30.28 8.31 25.60 0.21 -30.07 16 7 H 0.04 2.58 7.81 -2.91 -0.02 2.56 16 8 C 0.02 1.39 5.46 84.66 0.46 1.85 16 9 N -0.92 -55.70 13.29 21.45 0.28 -55.42 16 10 Si 0.95 46.16 29.54 68.60 2.03 48.18 16 11 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 14 C 0.51 21.99 7.66 87.23 0.67 22.66 16 15 O -0.55 -22.59 15.98 -3.29 -0.05 -22.64 16 16 C 0.48 21.15 7.72 87.22 0.67 21.82 16 17 O -0.43 -22.77 11.00 -3.33 -0.04 -22.81 16 18 N -0.61 -21.29 5.39 -315.13 -1.70 -22.98 16 19 C 0.23 7.95 8.01 179.28 1.44 9.38 16 20 N -0.52 -20.59 8.64 -201.92 -1.74 -22.33 16 21 C 0.04 1.15 11.24 83.61 0.94 2.09 16 22 C -0.22 -5.01 5.84 24.62 0.14 -4.87 16 23 C -0.04 -0.54 6.47 29.85 0.19 -0.35 16 24 C -0.15 -1.84 9.89 71.98 0.71 -1.12 16 25 S 0.19 4.29 23.22 -56.49 -1.31 2.98 16 26 H 0.12 2.55 8.06 -2.91 -0.02 2.52 16 27 H 0.10 2.62 7.84 -2.91 -0.02 2.60 16 28 H 0.11 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.09 3.13 7.76 -2.39 -0.02 3.11 16 30 H 0.09 3.24 7.24 -2.39 -0.02 3.22 16 31 H 0.02 1.15 8.02 -2.39 -0.02 1.13 16 32 H 0.05 2.82 5.41 -2.39 -0.01 2.81 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.44 12.19 8.30 -92.71 -0.77 11.42 16 35 H 0.18 4.87 8.06 -2.91 -0.02 4.85 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -74.53 361.84 3.30 -71.23 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.30 Total: 19.10 kcal Atomic # 6 Polarization: 23.82 SS G_CDS: 7.58 Total: 31.40 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -5.20 Total: -127.44 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -0.09 Total: -45.45 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.31 Total: 2.98 kcal Total: -74.53 3.30 -71.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293248910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.084 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds