Wall clock time and date at job start Tue Mar 31 2020 14:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99899 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99726 * 3 2 1 5 5 C 1.46499 * 119.99934 * 269.99675 * 4 3 2 6 6 C 1.50700 * 109.46912 * 270.00300 * 5 4 3 7 7 H 1.08000 * 120.00441 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00073 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99555 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00282 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47348 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47406 * 119.99805 * 10 8 6 13 13 H 1.48509 * 109.47027 * 239.99695 * 10 8 6 14 14 C 1.34777 * 120.00001 * 90.00069 * 4 3 2 15 15 O 1.21583 * 119.99929 * 179.97438 * 14 4 3 16 16 N 1.34777 * 120.00128 * 359.97438 * 14 4 3 17 17 C 1.39003 * 119.99882 * 180.27911 * 16 14 4 18 18 N 1.29408 * 124.93731 * 179.44393 * 17 16 14 19 19 C 1.32437 * 117.56822 * 179.82999 * 18 17 16 20 20 C 1.34661 * 113.31258 * 0.45932 * 19 18 17 21 21 S 1.70973 * 124.94003 * 359.74686 * 17 16 14 22 22 C 1.50956 * 124.26431 * 179.73210 * 20 19 18 23 23 O 1.43335 * 108.13862 * 345.39134 * 22 20 19 24 24 C 1.43025 * 113.80834 * 49.99153 * 23 22 20 25 25 C 1.52222 * 125.29822 * 180.23302 * 19 18 17 26 26 H 1.07996 * 120.00388 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99659 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99710 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46723 * 4.99296 * 3 2 1 30 30 H 1.09005 * 109.46546 * 244.99420 * 3 2 1 31 31 H 1.08996 * 109.47092 * 30.00115 * 5 4 3 32 32 H 1.08998 * 109.47416 * 150.00325 * 5 4 3 33 33 H 0.96996 * 119.99369 * 180.02562 * 9 8 6 34 34 H 0.97001 * 119.99727 * 359.97438 * 16 14 4 35 35 H 1.08995 * 109.72905 * 105.05645 * 22 20 19 36 36 H 1.08999 * 109.72732 * 225.68748 * 22 20 19 37 37 H 1.09001 * 109.43909 * 49.09037 * 24 23 22 38 38 H 1.09002 * 109.44674 * 169.02224 * 24 23 22 39 39 H 1.09001 * 109.75688 * 43.89108 * 25 19 18 40 40 H 1.08992 * 109.76257 * 283.13174 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3039 3.8370 1.6366 8 6 2.5192 4.0668 3.6083 9 7 1.9597 3.4660 4.6359 10 14 2.8722 5.8998 3.6768 11 1 3.5002 6.3310 2.4020 12 1 1.6017 6.6415 3.8789 13 1 3.7961 6.1842 4.8042 14 6 4.2496 0.8662 0.9825 15 8 5.0218 0.8889 1.9214 16 7 4.6497 0.3754 -0.2073 17 6 5.9432 -0.1103 -0.3593 18 7 6.4233 -0.6107 -1.4518 19 6 7.6802 -1.0278 -1.4345 20 6 8.2781 -0.8684 -0.2384 21 16 7.1290 -0.1400 0.8721 22 6 9.7042 -1.2645 0.0584 23 8 10.1594 -2.1185 -0.9990 24 6 9.9216 -1.5935 -2.3080 25 6 8.4209 -1.6379 -2.6161 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0894 30 1 2.6214 1.4025 -0.9314 31 1 1.4886 1.6968 2.5458 32 1 3.0988 1.3606 3.2260 33 1 1.7308 3.9748 5.4294 34 1 4.0335 0.3569 -0.9562 35 1 10.3307 -0.3740 0.1077 36 1 9.7478 -1.7982 1.0078 37 1 10.2712 -0.5621 -2.3542 38 1 10.4601 -2.1924 -3.0425 39 1 8.2128 -1.0626 -3.5182 40 1 8.1039 -2.6713 -2.7560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293430683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:08 Heat of formation + Delta-G solvation = 6.989413 kcal Electronic energy + Delta-G solvation = -24638.123941 eV Core-core repulsion = 20967.119208 eV Total energy + Delta-G solvation = -3671.004733 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49681 -39.89913 -37.90040 -36.12304 -34.67428 -33.28071 -32.29274 -31.75069 -30.52741 -27.79729 -26.02028 -25.21771 -24.51615 -23.38034 -22.22795 -20.59268 -20.02773 -19.05355 -17.99595 -17.42063 -16.97971 -16.63211 -16.13875 -15.77587 -15.30913 -15.13012 -14.91755 -14.78594 -14.34919 -14.07599 -13.80549 -13.49868 -13.06342 -12.93032 -12.72826 -12.46618 -12.19830 -11.95634 -11.43691 -11.28288 -11.23320 -11.02203 -10.88850 -10.72171 -10.41617 -10.25933 -10.09300 -9.78643 -9.57207 -9.48491 -9.33891 -8.88377 -8.52913 -8.18734 -7.73694 -6.14142 -4.19544 0.92707 1.33017 2.05598 2.28011 2.68982 2.75742 3.24387 3.32572 3.36201 3.55404 3.64334 4.10600 4.36181 4.41355 4.75519 4.86569 4.98097 5.04068 5.15932 5.20615 5.23248 5.23932 5.34471 5.38419 5.47670 5.69697 5.79982 5.86357 6.00953 6.05505 6.34380 6.46411 6.66692 6.78651 6.86312 7.11158 7.24090 7.37751 7.81325 7.87114 8.09017 8.21396 8.69915 8.87531 9.45944 10.93900 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015315 B = 0.003444 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.821940 B = 8129.033372 C = 9386.148596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.177 4.177 3 C 0.133 3.867 4 N -0.589 5.589 5 C 0.260 3.740 6 C -0.532 4.532 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.696 3.304 15 O -0.549 6.549 16 N -0.642 5.642 17 C 0.280 3.720 18 N -0.531 5.531 19 C 0.100 3.900 20 C -0.363 4.363 21 S 0.282 5.718 22 C 0.153 3.847 23 O -0.375 6.375 24 C 0.063 3.937 25 C -0.071 4.071 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.264 0.736 34 H 0.414 0.586 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.239 -9.430 -13.492 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.196 4.196 3 C 0.009 3.991 4 N -0.322 5.322 5 C 0.142 3.858 6 C -0.570 4.570 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.727 3.273 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.397 3.603 15 O -0.426 6.426 16 N -0.297 5.297 17 C -0.088 4.088 18 N -0.254 5.254 19 C -0.033 4.033 20 C -0.486 4.486 21 S 0.533 5.467 22 C 0.074 3.926 23 O -0.294 6.294 24 C -0.015 4.015 25 C -0.111 4.111 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.254 0.746 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.289 -9.150 -11.872 17.128 hybrid contribution -0.332 0.944 -1.207 1.568 sum 7.957 -8.206 -13.079 17.370 Atomic orbital electron populations 1.23852 0.95719 1.02005 0.99429 1.23393 0.96617 0.98701 1.00889 1.20645 0.93261 0.96219 0.88960 1.47588 1.07962 1.61826 1.14789 1.19377 0.95637 0.93833 0.76989 1.21448 1.40998 0.93120 1.01477 0.92286 1.24917 0.94889 0.98876 0.95224 1.69938 1.41729 1.36206 1.05174 0.86428 0.77973 0.84728 0.78209 1.19803 1.20907 1.20773 1.15895 0.84112 0.79088 0.81247 1.90827 1.52011 1.61642 1.38089 1.42295 1.09736 1.62890 1.14773 1.22931 0.91912 0.99361 0.94641 1.65730 1.13945 1.19497 1.26258 1.20047 0.88102 1.00139 0.95047 1.27231 1.04848 1.15914 1.00605 1.85089 0.98263 1.54777 1.08602 1.20894 0.86561 0.94225 0.90921 1.88054 1.80855 1.46098 1.14351 1.22611 0.94272 0.99638 0.84948 1.20997 0.94039 1.01324 0.94701 0.88065 0.88543 0.87691 0.88393 0.91252 0.94233 0.93391 0.92620 0.74599 0.91493 0.87736 0.92585 0.88010 0.89158 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 14.32 29.01 0.42 -1.66 16 2 C -0.18 -2.37 9.85 -36.02 -0.35 -2.72 16 3 C 0.13 2.01 5.61 -5.19 -0.03 1.99 16 4 N -0.59 -11.76 2.44 -182.19 -0.44 -12.20 16 5 C 0.26 6.41 5.16 -5.19 -0.03 6.39 16 6 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.75 5.46 -17.81 -0.10 1.65 16 9 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 10 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 14 C 0.70 14.08 8.24 -86.92 -0.72 13.37 16 15 O -0.55 -12.87 13.38 5.29 0.07 -12.80 16 16 N -0.64 -10.77 5.27 -17.52 -0.09 -10.87 16 17 C 0.28 4.79 8.19 -87.52 -0.72 4.08 16 18 N -0.53 -8.64 10.56 -10.47 -0.11 -8.75 16 19 C 0.10 1.46 6.88 -82.84 -0.57 0.89 16 20 C -0.36 -5.14 6.49 -35.45 -0.23 -5.37 16 21 S 0.28 4.64 20.20 -107.50 -2.17 2.47 16 22 C 0.15 1.73 7.24 36.13 0.26 1.99 16 23 O -0.38 -4.32 10.79 -35.23 -0.38 -4.70 16 24 C 0.06 0.57 6.75 37.29 0.25 0.82 16 25 C -0.07 -0.75 6.57 -26.99 -0.18 -0.92 16 26 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 27 H 0.10 1.01 8.06 -52.48 -0.42 0.58 16 28 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.10 1.51 7.72 -51.93 -0.40 1.11 16 30 H 0.07 0.88 6.36 -51.93 -0.33 0.55 16 31 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 32 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.41 5.85 6.55 -40.82 -0.27 5.58 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -32.08 351.91 -9.56 -41.64 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.14 Total: 2.71 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -2.31 Total: 5.80 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.09 Total: -56.62 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.31 Total: -17.50 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -2.17 Total: 2.47 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.08 -9.56 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293430683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.628 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds