Wall clock time and date at job start Tue Mar 31 2020 14:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99899 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99726 * 3 2 1 5 5 C 1.46499 * 119.99934 * 269.99675 * 4 3 2 6 6 C 1.50700 * 109.46912 * 270.00300 * 5 4 3 7 7 H 1.08000 * 120.00441 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00073 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99555 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00282 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47348 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47406 * 119.99805 * 10 8 6 13 13 H 1.48509 * 109.47027 * 239.99695 * 10 8 6 14 14 C 1.34777 * 120.00001 * 90.00069 * 4 3 2 15 15 O 1.21583 * 119.99929 * 179.97438 * 14 4 3 16 16 N 1.34777 * 120.00128 * 359.97438 * 14 4 3 17 17 C 1.39003 * 119.99882 * 180.27911 * 16 14 4 18 18 N 1.29408 * 124.93731 * 179.44393 * 17 16 14 19 19 C 1.32437 * 117.56822 * 179.82999 * 18 17 16 20 20 C 1.34661 * 113.31258 * 0.45932 * 19 18 17 21 21 S 1.70973 * 124.94003 * 359.74686 * 17 16 14 22 22 C 1.50956 * 124.26431 * 179.73210 * 20 19 18 23 23 O 1.43335 * 108.13862 * 345.39134 * 22 20 19 24 24 C 1.43025 * 113.80834 * 49.99153 * 23 22 20 25 25 C 1.52222 * 125.29822 * 180.23302 * 19 18 17 26 26 H 1.07996 * 120.00388 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99659 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99710 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46723 * 4.99296 * 3 2 1 30 30 H 1.09005 * 109.46546 * 244.99420 * 3 2 1 31 31 H 1.08996 * 109.47092 * 30.00115 * 5 4 3 32 32 H 1.08998 * 109.47416 * 150.00325 * 5 4 3 33 33 H 0.96996 * 119.99369 * 180.02562 * 9 8 6 34 34 H 0.97001 * 119.99727 * 359.97438 * 16 14 4 35 35 H 1.08995 * 109.72905 * 105.05645 * 22 20 19 36 36 H 1.08999 * 109.72732 * 225.68748 * 22 20 19 37 37 H 1.09001 * 109.43909 * 49.09037 * 24 23 22 38 38 H 1.09002 * 109.44674 * 169.02224 * 24 23 22 39 39 H 1.09001 * 109.75688 * 43.89108 * 25 19 18 40 40 H 1.08992 * 109.76257 * 283.13174 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3039 3.8370 1.6366 8 6 2.5192 4.0668 3.6083 9 7 1.9597 3.4660 4.6359 10 14 2.8722 5.8998 3.6768 11 1 3.5002 6.3310 2.4020 12 1 1.6017 6.6415 3.8789 13 1 3.7961 6.1842 4.8042 14 6 4.2496 0.8662 0.9825 15 8 5.0218 0.8889 1.9214 16 7 4.6497 0.3754 -0.2073 17 6 5.9432 -0.1103 -0.3593 18 7 6.4233 -0.6107 -1.4518 19 6 7.6802 -1.0278 -1.4345 20 6 8.2781 -0.8684 -0.2384 21 16 7.1290 -0.1400 0.8721 22 6 9.7042 -1.2645 0.0584 23 8 10.1594 -2.1185 -0.9990 24 6 9.9216 -1.5935 -2.3080 25 6 8.4209 -1.6379 -2.6161 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0894 30 1 2.6214 1.4025 -0.9314 31 1 1.4886 1.6968 2.5458 32 1 3.0988 1.3606 3.2260 33 1 1.7308 3.9748 5.4294 34 1 4.0335 0.3569 -0.9562 35 1 10.3307 -0.3740 0.1077 36 1 9.7478 -1.7982 1.0078 37 1 10.2712 -0.5621 -2.3542 38 1 10.4601 -2.1924 -3.0425 39 1 8.2128 -1.0626 -3.5182 40 1 8.1039 -2.6713 -2.7560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293430683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:07 Heat of formation + Delta-G solvation = -13.222491 kcal Electronic energy + Delta-G solvation = -24639.000395 eV Core-core repulsion = 20967.119208 eV Total energy + Delta-G solvation = -3671.881187 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.89315 -41.09969 -38.93948 -37.57753 -36.12544 -35.00186 -33.83354 -32.68353 -31.60528 -29.62456 -27.27730 -26.55884 -25.51721 -24.97923 -23.48885 -22.03471 -21.16769 -20.25109 -19.30040 -18.75717 -18.48791 -18.26526 -17.23439 -17.07137 -16.74098 -16.43875 -16.05967 -15.96400 -15.90449 -15.35843 -14.88337 -14.76671 -14.48479 -14.22481 -13.98817 -13.65967 -13.37122 -13.33053 -13.11578 -12.95091 -12.62299 -12.36623 -12.32227 -12.18585 -11.87232 -11.71985 -11.64569 -11.09796 -11.02795 -10.67365 -10.64735 -10.40903 -10.13704 -9.76795 -9.06059 -8.23146 -6.37112 -0.31384 0.08258 0.82639 1.10748 1.37599 1.39208 1.41845 1.50396 1.52044 2.06166 2.37678 2.71697 2.87149 3.07996 3.32697 3.83935 3.92916 3.95512 4.09831 4.20571 4.25119 4.27700 4.41006 4.55426 4.68008 4.68928 4.79055 4.85010 4.94161 4.98804 4.99248 5.16483 5.27965 5.37078 5.57710 5.65935 5.74111 5.85024 6.02152 6.06109 6.52490 6.70233 6.77141 7.16613 7.35134 8.84081 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015315 B = 0.003444 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.821940 B = 8129.033372 C = 9386.148596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.193 4.193 3 C 0.130 3.870 4 N -0.593 5.593 5 C 0.280 3.720 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.014 3.986 9 N -0.924 5.924 10 Si 0.964 3.036 11 H -0.269 1.269 12 H -0.270 1.270 13 H -0.282 1.282 14 C 0.695 3.305 15 O -0.589 6.589 16 N -0.628 5.628 17 C 0.258 3.742 18 N -0.528 5.528 19 C 0.078 3.922 20 C -0.345 4.345 21 S 0.241 5.759 22 C 0.150 3.850 23 O -0.385 6.385 24 C 0.060 3.940 25 C -0.068 4.068 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.033 0.967 32 H 0.007 0.993 33 H 0.268 0.732 34 H 0.426 0.574 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.064 0.936 38 H 0.134 0.866 39 H 0.105 0.895 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.048 -9.522 -15.619 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.213 4.213 3 C 0.008 3.992 4 N -0.325 5.325 5 C 0.159 3.841 6 C -0.582 4.582 7 H 0.072 0.928 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.789 3.211 11 H -0.194 1.194 12 H -0.195 1.195 13 H -0.208 1.208 14 C 0.396 3.604 15 O -0.468 6.468 16 N -0.283 5.283 17 C -0.110 4.110 18 N -0.252 5.252 19 C -0.054 4.054 20 C -0.468 4.468 21 S 0.492 5.508 22 C 0.072 3.928 23 O -0.304 6.304 24 C -0.017 4.017 25 C -0.107 4.107 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.051 0.949 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.268 0.732 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.152 0.848 39 H 0.124 0.876 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.091 -9.268 -14.080 19.151 hybrid contribution -0.540 0.879 -0.623 1.205 sum 8.551 -8.390 -14.703 18.965 Atomic orbital electron populations 1.24091 0.95278 1.03225 0.96818 1.23252 0.97060 0.97761 1.03202 1.20880 0.92874 0.97283 0.88138 1.47409 1.08813 1.61670 1.14636 1.18794 0.94412 0.92580 0.78306 1.21699 1.40792 0.94281 1.01443 0.92822 1.25755 0.94629 1.03368 0.94845 1.70043 1.42601 1.37963 1.05756 0.85418 0.78166 0.79428 0.78083 1.19363 1.19531 1.20808 1.15929 0.83784 0.79009 0.81716 1.90806 1.53185 1.63078 1.39740 1.41876 1.10078 1.62439 1.13915 1.23032 0.92008 1.00890 0.95089 1.65785 1.14859 1.18826 1.25710 1.20810 0.87664 1.00281 0.96677 1.27535 1.05565 1.14201 0.99484 1.85190 0.99711 1.55736 1.10206 1.21098 0.84861 0.95250 0.91636 1.88056 1.80606 1.46488 1.15216 1.22858 0.93453 1.00882 0.84492 1.21181 0.94489 1.01477 0.93589 0.87642 0.86504 0.87488 0.88756 0.88698 0.94884 0.97468 0.92341 0.73169 0.89623 0.86662 0.91798 0.84837 0.87645 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 14.32 67.78 0.97 -2.54 16 2 C -0.19 -5.02 9.85 25.65 0.25 -4.77 16 3 C 0.13 3.91 5.61 85.63 0.48 4.39 16 4 N -0.59 -24.29 2.44 -848.58 -2.07 -26.36 16 5 C 0.28 14.35 5.16 85.63 0.44 14.79 16 6 C -0.54 -30.03 9.39 25.60 0.24 -29.79 16 7 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 8 C 0.01 0.76 5.46 84.65 0.46 1.22 16 9 N -0.92 -53.94 13.29 21.45 0.28 -53.65 16 10 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 14 C 0.70 29.00 8.24 179.05 1.48 30.47 16 15 O -0.59 -28.92 13.38 -3.98 -0.05 -28.97 16 16 N -0.63 -21.25 5.27 -327.60 -1.73 -22.97 16 17 C 0.26 8.88 8.19 179.27 1.47 10.35 16 18 N -0.53 -16.76 10.56 -187.04 -1.97 -18.74 16 19 C 0.08 2.15 6.88 42.14 0.29 2.44 16 20 C -0.35 -9.43 6.49 24.95 0.16 -9.26 16 21 S 0.24 8.11 20.20 -56.49 -1.14 6.97 16 22 C 0.15 3.12 7.24 71.32 0.52 3.63 16 23 O -0.39 -7.82 10.79 -148.98 -1.61 -9.43 16 24 C 0.06 0.89 6.75 72.07 0.49 1.38 16 25 C -0.07 -1.25 6.57 30.43 0.20 -1.05 16 26 H 0.11 2.28 7.84 -2.91 -0.02 2.26 16 27 H 0.12 2.16 8.06 -2.91 -0.02 2.14 16 28 H 0.11 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.09 2.89 7.72 -2.39 -0.02 2.87 16 30 H 0.10 2.31 6.36 -2.38 -0.02 2.29 16 31 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 32 H 0.01 0.43 7.42 -2.39 -0.02 0.41 16 33 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.43 11.83 6.55 -92.71 -0.61 11.23 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.06 0.87 8.08 -2.39 -0.02 0.85 16 38 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.11 1.63 8.14 -2.39 -0.02 1.62 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -70.70 351.91 1.65 -69.06 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.46 Total: 17.08 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 7.45 Total: 21.26 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -5.49 Total: -121.72 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -1.66 Total: -38.40 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 8.11 SS G_CDS: -1.14 Total: 6.97 kcal Total: -70.70 1.65 -69.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293430683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.834 kcal (2) G-P(sol) polarization free energy of solvation -70.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds