Wall clock time and date at job start Tue Mar 31 2020 13:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 119.99931 * 2 1 4 4 N 1.46502 * 109.47049 * 124.96229 * 3 2 1 5 5 C 1.46500 * 120.00256 * 273.89345 * 4 3 2 6 6 C 1.50704 * 109.47080 * 275.22755 * 5 4 3 7 7 H 1.08002 * 119.99366 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00077 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00302 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99875 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47064 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47093 * 119.99748 * 10 8 6 13 13 H 1.48490 * 109.47225 * 240.00063 * 10 8 6 14 14 C 1.34781 * 120.00139 * 93.88932 * 4 3 2 15 15 O 1.21281 * 119.99619 * 5.80167 * 14 4 3 16 16 C 1.50697 * 120.00115 * 185.80764 * 14 4 3 17 17 C 1.53000 * 109.46955 * 182.85121 * 16 14 4 18 18 O 1.42896 * 109.46929 * 302.85247 * 16 14 4 19 19 C 1.50702 * 109.47170 * 62.85291 * 16 14 4 20 20 C 1.38238 * 119.99028 * 45.46843 * 19 16 14 21 21 C 1.38213 * 120.01690 * 180.25130 * 20 19 16 22 22 C 1.38354 * 119.97951 * 359.47123 * 21 20 19 23 23 Cl 1.73605 * 120.00961 * 180.27361 * 22 21 20 24 24 C 1.38352 * 119.97815 * 0.25635 * 22 21 20 25 25 C 1.38209 * 119.98690 * 359.97438 * 24 22 21 26 26 H 1.08000 * 120.00067 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00430 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00067 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47571 * 4.96813 * 3 2 1 30 30 H 1.08995 * 109.47491 * 244.96169 * 3 2 1 31 31 H 1.09003 * 109.47293 * 35.22577 * 5 4 3 32 32 H 1.09000 * 109.47617 * 155.22950 * 5 4 3 33 33 H 0.97006 * 120.00519 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47288 * 304.16293 * 17 16 14 35 35 H 1.09003 * 109.47211 * 64.16340 * 17 16 14 36 36 H 1.08999 * 109.47149 * 184.15927 * 17 16 14 37 37 H 0.96694 * 114.00141 * 69.80053 * 18 16 14 38 38 H 1.08004 * 119.99420 * 0.02562 * 20 19 16 39 39 H 1.07992 * 120.00913 * 179.74738 * 21 20 19 40 40 H 1.07999 * 120.00375 * 180.02562 * 24 22 21 41 41 H 1.07996 * 119.99465 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9931 1.3322 1.1320 5 6 2.5332 1.7859 2.4468 6 6 2.6209 3.2887 2.5187 7 1 2.9827 3.8496 1.6696 8 6 2.2385 3.9474 3.6679 9 7 1.7975 3.2644 4.7016 10 14 2.3466 5.8102 3.7567 11 1 2.8699 6.3375 2.4709 12 1 0.9956 6.3730 4.0087 13 1 3.2595 6.2010 4.8607 14 6 4.2714 0.9398 0.9637 15 8 4.6804 0.6647 -0.1444 16 6 5.1925 0.8426 2.1525 17 6 6.5934 0.4472 1.6813 18 8 5.2518 2.1080 2.8138 19 6 4.6712 -0.1996 3.1081 20 6 4.2420 -1.4233 2.6290 21 6 3.7589 -2.3776 3.5043 22 6 3.7152 -2.1120 4.8614 23 17 3.1152 -3.3129 5.9623 24 6 4.1501 -0.8893 5.3409 25 6 4.6285 0.0660 4.4641 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0890 30 1 2.6218 1.4023 -0.9310 31 1 1.4994 1.4747 2.5975 32 1 3.1612 1.3478 3.2226 33 1 1.5280 3.7278 5.5101 34 1 6.5370 -0.4811 1.1129 35 1 7.0002 1.2363 1.0488 36 1 7.2410 0.3049 2.5464 37 1 4.4344 2.3527 3.2687 38 1 4.2807 -1.6323 1.5701 39 1 3.4198 -3.3320 3.1295 40 1 4.1165 -0.6817 6.4002 41 1 4.9684 1.0203 4.8383 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293683129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:23 Heat of formation + Delta-G solvation = -39.752332 kcal Electronic energy + Delta-G solvation = -26442.166632 eV Core-core repulsion = 22734.798567 eV Total energy + Delta-G solvation = -3707.368065 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54751 -38.58726 -36.65608 -35.89031 -35.72355 -33.40794 -32.26410 -31.74029 -30.78906 -28.96704 -27.70239 -26.20916 -23.68894 -23.04989 -22.55896 -21.28348 -19.78365 -18.72479 -17.65415 -16.85465 -16.46299 -16.15848 -15.81851 -15.11257 -14.86885 -14.55564 -14.44841 -14.04626 -13.59994 -13.35334 -13.15324 -12.94236 -12.72495 -12.43405 -12.34595 -12.07377 -11.81342 -11.47628 -11.43692 -11.38177 -11.31697 -11.16694 -10.98138 -10.90693 -10.79632 -10.67460 -10.36803 -10.21004 -9.86100 -9.21916 -8.90042 -8.86327 -8.74537 -8.22514 -7.87130 -6.33691 -4.43804 1.25383 1.47485 2.23117 2.51054 3.12272 3.16044 3.25637 3.31495 3.73471 3.90132 4.23495 4.73228 4.81392 4.95054 5.02921 5.04810 5.16011 5.32799 5.46350 5.49096 5.51360 5.65996 5.80344 5.90927 6.06419 6.09195 6.13398 6.18256 6.29784 6.33921 6.40989 6.44199 6.56677 6.67414 6.87116 6.92911 6.94746 7.05036 7.37677 7.62088 7.83655 8.17224 8.34147 8.62899 8.81675 9.25606 10.70561 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.005712 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.288290 B = 4900.852416 C = 5620.946119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.156 4.156 3 C 0.139 3.861 4 N -0.583 5.583 5 C 0.221 3.779 6 C -0.548 4.548 7 H 0.068 0.932 8 C 0.068 3.932 9 N -0.882 5.882 10 Si 0.899 3.101 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.280 1.280 14 C 0.501 3.499 15 O -0.562 6.562 16 C 0.166 3.834 17 C -0.117 4.117 18 O -0.553 6.553 19 C -0.098 4.098 20 C -0.097 4.097 21 C -0.110 4.110 22 C -0.034 4.034 23 Cl -0.081 7.081 24 C -0.102 4.102 25 C -0.079 4.079 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.268 0.732 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.407 0.593 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 -9.443 -0.214 9.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.176 4.176 3 C 0.017 3.983 4 N -0.313 5.313 5 C 0.101 3.899 6 C -0.587 4.587 7 H 0.086 0.914 8 C -0.137 4.137 9 N -0.519 5.519 10 Si 0.726 3.274 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.206 1.206 14 C 0.287 3.713 15 O -0.443 6.443 16 C 0.121 3.879 17 C -0.175 4.175 18 O -0.370 6.370 19 C -0.099 4.099 20 C -0.115 4.115 21 C -0.129 4.129 22 C -0.060 4.060 23 Cl -0.052 7.052 24 C -0.121 4.121 25 C -0.098 4.098 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.268 0.732 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.064 -9.635 -0.693 10.134 hybrid contribution -0.985 0.933 0.617 1.491 sum 2.078 -8.702 -0.076 8.947 Atomic orbital electron populations 1.23773 0.95771 1.01609 1.01476 1.23321 0.96100 0.99050 0.99082 1.20454 0.92356 0.94884 0.90644 1.48173 1.08668 1.61905 1.12508 1.19774 0.96996 0.95018 0.78122 1.21574 1.45041 0.91413 1.00649 0.91405 1.24985 0.94219 0.99114 0.95365 1.69939 1.41895 1.36014 1.04080 0.86409 0.77871 0.84634 0.78522 1.19466 1.20827 1.20561 1.21118 0.82896 0.76843 0.90406 1.90591 1.75779 1.51995 1.25914 1.20051 0.95327 0.84071 0.88470 1.21547 0.92455 1.02274 1.01185 1.86495 1.45633 1.33402 1.71488 1.20456 0.99063 0.95465 0.94898 1.20868 0.98218 0.92664 0.99754 1.20889 1.00808 1.00156 0.91052 1.20893 1.02909 0.91441 0.90763 1.98347 1.86901 1.56449 1.63541 1.20985 0.98808 0.91561 1.00715 1.20997 0.97376 0.99428 0.91952 0.88394 0.88867 0.87995 0.89806 0.89775 0.94359 0.93473 0.92217 0.90840 0.90981 0.91645 0.73172 0.85410 0.85208 0.84824 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 14.32 29.02 0.42 -2.28 16 2 C -0.16 -2.52 9.85 -36.03 -0.35 -2.88 16 3 C 0.14 2.56 5.95 -5.19 -0.03 2.53 16 4 N -0.58 -11.96 2.44 -176.43 -0.43 -12.39 16 5 C 0.22 4.96 4.49 -5.19 -0.02 4.93 16 6 C -0.55 -13.42 7.41 -34.44 -0.26 -13.67 16 7 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 8 C 0.07 1.67 5.45 -17.82 -0.10 1.58 16 9 N -0.88 -22.37 13.29 55.43 0.74 -21.64 16 10 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 C 0.50 10.28 5.71 -10.98 -0.06 10.21 16 15 O -0.56 -12.25 15.41 5.56 0.09 -12.16 16 16 C 0.17 3.09 0.92 -92.92 -0.09 3.01 16 17 C -0.12 -1.90 8.12 37.16 0.30 -1.60 16 18 O -0.55 -11.49 11.68 -35.23 -0.41 -11.91 16 19 C -0.10 -1.66 3.20 -104.62 -0.33 -2.00 16 20 C -0.10 -1.50 9.10 -39.59 -0.36 -1.86 16 21 C -0.11 -1.56 9.83 -39.55 -0.39 -1.95 16 22 C -0.03 -0.49 6.32 -39.50 -0.25 -0.74 16 23 Cl -0.08 -1.05 28.96 -51.86 -1.50 -2.55 16 24 C -0.10 -1.54 9.83 -39.55 -0.39 -1.93 16 25 C -0.08 -1.31 7.99 -39.59 -0.32 -1.63 16 26 H 0.10 1.37 7.84 -52.49 -0.41 0.96 16 27 H 0.09 1.16 8.06 -52.48 -0.42 0.73 16 28 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.08 1.54 7.75 -51.93 -0.40 1.14 16 30 H 0.08 1.55 7.24 -51.93 -0.38 1.18 16 31 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 32 H 0.05 1.05 2.81 -51.93 -0.15 0.91 16 33 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 34 H 0.07 1.11 7.94 -51.93 -0.41 0.70 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.41 9.04 3.61 45.56 0.16 9.21 16 38 H 0.13 1.94 7.59 -52.48 -0.40 1.54 16 39 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.14 2.37 6.91 -52.49 -0.36 2.01 16 LS Contribution 355.57 15.07 5.36 5.36 Total: -1.00 -26.36 355.57 -8.26 -34.63 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -4.85 Total: 14.25 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -2.23 Total: -8.28 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.31 Total: -34.02 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.33 Total: -24.07 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.55 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.36 -8.26 -34.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293683129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.126 kcal (2) G-P(sol) polarization free energy of solvation -26.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds