Wall clock time and date at job start Tue Mar 31 2020 13:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 119.99931 * 2 1 4 4 N 1.46502 * 109.47049 * 124.96229 * 3 2 1 5 5 C 1.46500 * 120.00256 * 273.89345 * 4 3 2 6 6 C 1.50704 * 109.47080 * 275.22755 * 5 4 3 7 7 H 1.08002 * 119.99366 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00077 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00302 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99875 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47064 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47093 * 119.99748 * 10 8 6 13 13 H 1.48490 * 109.47225 * 240.00063 * 10 8 6 14 14 C 1.34781 * 120.00139 * 93.88932 * 4 3 2 15 15 O 1.21281 * 119.99619 * 5.80167 * 14 4 3 16 16 C 1.50697 * 120.00115 * 185.80764 * 14 4 3 17 17 C 1.53000 * 109.46955 * 182.85121 * 16 14 4 18 18 O 1.42896 * 109.46929 * 302.85247 * 16 14 4 19 19 C 1.50702 * 109.47170 * 62.85291 * 16 14 4 20 20 C 1.38238 * 119.99028 * 45.46843 * 19 16 14 21 21 C 1.38213 * 120.01690 * 180.25130 * 20 19 16 22 22 C 1.38354 * 119.97951 * 359.47123 * 21 20 19 23 23 Cl 1.73605 * 120.00961 * 180.27361 * 22 21 20 24 24 C 1.38352 * 119.97815 * 0.25635 * 22 21 20 25 25 C 1.38209 * 119.98690 * 359.97438 * 24 22 21 26 26 H 1.08000 * 120.00067 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00430 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00067 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47571 * 4.96813 * 3 2 1 30 30 H 1.08995 * 109.47491 * 244.96169 * 3 2 1 31 31 H 1.09003 * 109.47293 * 35.22577 * 5 4 3 32 32 H 1.09000 * 109.47617 * 155.22950 * 5 4 3 33 33 H 0.97006 * 120.00519 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47288 * 304.16293 * 17 16 14 35 35 H 1.09003 * 109.47211 * 64.16340 * 17 16 14 36 36 H 1.08999 * 109.47149 * 184.15927 * 17 16 14 37 37 H 0.96694 * 114.00141 * 69.80053 * 18 16 14 38 38 H 1.08004 * 119.99420 * 0.02562 * 20 19 16 39 39 H 1.07992 * 120.00913 * 179.74738 * 21 20 19 40 40 H 1.07999 * 120.00375 * 180.02562 * 24 22 21 41 41 H 1.07996 * 119.99465 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9931 1.3322 1.1320 5 6 2.5332 1.7859 2.4468 6 6 2.6209 3.2887 2.5187 7 1 2.9827 3.8496 1.6696 8 6 2.2385 3.9474 3.6679 9 7 1.7975 3.2644 4.7016 10 14 2.3466 5.8102 3.7567 11 1 2.8699 6.3375 2.4709 12 1 0.9956 6.3730 4.0087 13 1 3.2595 6.2010 4.8607 14 6 4.2714 0.9398 0.9637 15 8 4.6804 0.6647 -0.1444 16 6 5.1925 0.8426 2.1525 17 6 6.5934 0.4472 1.6813 18 8 5.2518 2.1080 2.8138 19 6 4.6712 -0.1996 3.1081 20 6 4.2420 -1.4233 2.6290 21 6 3.7589 -2.3776 3.5043 22 6 3.7152 -2.1120 4.8614 23 17 3.1152 -3.3129 5.9623 24 6 4.1501 -0.8893 5.3409 25 6 4.6285 0.0660 4.4641 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0890 30 1 2.6218 1.4023 -0.9310 31 1 1.4994 1.4747 2.5975 32 1 3.1612 1.3478 3.2226 33 1 1.5280 3.7278 5.5101 34 1 6.5370 -0.4811 1.1129 35 1 7.0002 1.2363 1.0488 36 1 7.2410 0.3049 2.5464 37 1 4.4344 2.3527 3.2687 38 1 4.2807 -1.6323 1.5701 39 1 3.4198 -3.3320 3.1295 40 1 4.1165 -0.6817 6.4002 41 1 4.9684 1.0203 4.8383 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293683129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:23 Heat of formation + Delta-G solvation = -52.757993 kcal Electronic energy + Delta-G solvation = -26442.730600 eV Core-core repulsion = 22734.798567 eV Total energy + Delta-G solvation = -3707.932033 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.01666 -39.94288 -37.99766 -37.34694 -37.13573 -35.07342 -33.86149 -33.12798 -31.99885 -30.25831 -29.46105 -27.69077 -25.29200 -24.55381 -23.81542 -22.64079 -21.11769 -20.24415 -19.00147 -18.62092 -18.14415 -17.64525 -17.22219 -16.48026 -16.38243 -16.10223 -15.83490 -15.41064 -14.99045 -14.63377 -14.54141 -14.32277 -14.17572 -14.10543 -13.72046 -13.46106 -13.21540 -13.13625 -12.88892 -12.74410 -12.64081 -12.61377 -12.53992 -12.43256 -12.27196 -12.04940 -11.80085 -11.75577 -11.66643 -10.68836 -10.60900 -10.27111 -10.03956 -9.57030 -9.50030 -8.23884 -6.39441 0.03585 0.28064 1.10592 1.25773 1.40239 1.44740 1.51274 1.57722 2.29971 2.42579 2.57084 3.03597 3.34666 3.40185 3.59794 3.82778 3.90117 4.04000 4.11654 4.18369 4.30178 4.42712 4.50834 4.62038 4.77355 4.78338 4.82350 4.83962 4.92993 5.01239 5.09646 5.15415 5.17679 5.21101 5.42451 5.56368 5.65101 5.70115 5.72672 5.88048 5.96371 6.47829 6.66315 6.74242 7.14956 7.33517 8.79476 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.005712 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.288290 B = 4900.852416 C = 5620.946119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.177 4.177 3 C 0.136 3.864 4 N -0.585 5.585 5 C 0.236 3.764 6 C -0.555 4.555 7 H 0.050 0.950 8 C 0.036 3.964 9 N -0.901 5.901 10 Si 0.950 3.050 11 H -0.277 1.277 12 H -0.279 1.279 13 H -0.275 1.275 14 C 0.496 3.504 15 O -0.579 6.579 16 C 0.160 3.840 17 C -0.114 4.114 18 O -0.564 6.564 19 C -0.109 4.109 20 C -0.100 4.100 21 C -0.103 4.103 22 C -0.036 4.036 23 Cl -0.064 7.064 24 C -0.104 4.104 25 C -0.093 4.093 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.017 0.983 32 H 0.054 0.946 33 H 0.271 0.729 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.399 0.601 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.148 0.852 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 -10.645 0.295 10.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.014 3.986 4 N -0.314 5.314 5 C 0.115 3.885 6 C -0.593 4.593 7 H 0.068 0.932 8 C -0.167 4.167 9 N -0.538 5.538 10 Si 0.776 3.224 11 H -0.202 1.202 12 H -0.204 1.204 13 H -0.200 1.200 14 C 0.283 3.717 15 O -0.461 6.461 16 C 0.116 3.884 17 C -0.171 4.171 18 O -0.380 6.380 19 C -0.110 4.110 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.062 4.062 23 Cl -0.035 7.035 24 C -0.123 4.123 25 C -0.111 4.111 26 H 0.118 0.882 27 H 0.138 0.862 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.259 0.741 38 H 0.148 0.852 39 H 0.173 0.827 40 H 0.166 0.834 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.543 -10.846 -0.192 11.141 hybrid contribution -0.880 1.254 0.453 1.598 sum 1.662 -9.591 0.261 9.738 Atomic orbital electron populations 1.24015 0.95114 1.02967 0.98298 1.23143 0.96669 0.97810 1.01951 1.20537 0.92101 0.96302 0.89672 1.48199 1.09206 1.61688 1.12352 1.19475 0.95761 0.93931 0.79285 1.21604 1.45127 0.92433 1.00179 0.93163 1.25496 0.93941 1.02147 0.95093 1.69989 1.42303 1.37165 1.04388 0.85624 0.77856 0.80861 0.78078 1.20194 1.20434 1.20029 1.21499 0.82980 0.76379 0.90826 1.90569 1.76010 1.52831 1.26660 1.20248 0.96273 0.83827 0.88077 1.21576 0.91353 1.02310 1.01884 1.86477 1.45007 1.34913 1.71581 1.20316 1.00335 0.95647 0.94670 1.20922 0.98288 0.92438 1.00152 1.21143 0.99588 1.00719 0.90727 1.21006 1.02340 0.91589 0.91314 1.98355 1.86587 1.55571 1.62963 1.21151 0.98285 0.91542 1.01274 1.20972 0.98374 0.99612 0.92118 0.88205 0.86228 0.87671 0.90413 0.90424 0.96523 0.92875 0.91932 0.89751 0.91934 0.89789 0.74127 0.85188 0.82650 0.83427 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.45 14.32 67.78 0.97 -3.48 16 2 C -0.18 -5.56 9.85 25.65 0.25 -5.31 16 3 C 0.14 5.07 5.95 85.63 0.51 5.58 16 4 N -0.59 -24.37 2.44 -830.50 -2.03 -26.39 16 5 C 0.24 10.77 4.49 85.63 0.38 11.15 16 6 C -0.56 -27.59 7.41 25.60 0.19 -27.41 16 7 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 8 C 0.04 1.79 5.45 84.65 0.46 2.25 16 9 N -0.90 -45.58 13.29 21.44 0.28 -45.30 16 10 Si 0.95 40.41 29.54 68.60 2.03 42.43 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 14 C 0.50 20.55 5.71 87.66 0.50 21.05 16 15 O -0.58 -25.41 15.41 -3.03 -0.05 -25.46 16 16 C 0.16 6.00 0.92 -12.29 -0.01 5.99 16 17 C -0.11 -3.65 8.12 71.98 0.58 -3.06 16 18 O -0.56 -23.86 11.68 -148.98 -1.74 -25.60 16 19 C -0.11 -3.65 3.20 -19.86 -0.06 -3.72 16 20 C -0.10 -2.97 9.10 22.26 0.20 -2.77 16 21 C -0.10 -2.70 9.83 22.29 0.22 -2.48 16 22 C -0.04 -0.97 6.32 22.32 0.14 -0.83 16 23 Cl -0.06 -1.50 28.96 -2.72 -0.08 -1.58 16 24 C -0.10 -3.01 9.83 22.29 0.22 -2.79 16 25 C -0.09 -3.03 7.99 22.27 0.18 -2.86 16 26 H 0.10 2.63 7.84 -2.91 -0.02 2.61 16 27 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 28 H 0.11 3.23 8.06 -2.91 -0.02 3.21 16 29 H 0.08 2.92 7.75 -2.39 -0.02 2.90 16 30 H 0.08 2.94 7.24 -2.39 -0.02 2.92 16 31 H 0.02 0.83 8.11 -2.39 -0.02 0.81 16 32 H 0.05 2.40 2.81 -2.39 -0.01 2.40 16 33 H 0.27 13.05 8.31 -92.70 -0.77 12.28 16 34 H 0.08 2.49 7.94 -2.39 -0.02 2.47 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.40 18.16 3.61 -74.06 -0.27 17.89 16 38 H 0.13 3.79 7.59 -2.91 -0.02 3.77 16 39 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 41 H 0.13 4.51 6.91 -2.91 -0.02 4.49 16 Total: -1.00 -55.26 355.57 3.94 -51.32 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: 0.78 Total: 39.26 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 4.74 Total: -8.68 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -1.74 Total: -71.69 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -1.79 Total: -51.06 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -55.26 3.94 -51.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293683129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.443 kcal (2) G-P(sol) polarization free energy of solvation -55.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds