Wall clock time and date at job start Tue Mar 31 2020 13:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00355 * 2 1 4 4 N 1.46501 * 109.46665 * 124.40893 * 3 2 1 5 5 C 1.46505 * 119.99907 * 274.76149 * 4 3 2 6 6 C 1.50702 * 109.47090 * 270.00418 * 5 4 3 7 7 H 1.08005 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00063 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99868 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00204 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47107 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47729 * 119.99902 * 10 8 6 13 13 H 1.48503 * 109.46868 * 239.99830 * 10 8 6 14 14 C 1.34768 * 120.00027 * 94.76841 * 4 3 2 15 15 O 1.21289 * 120.00303 * 355.34616 * 14 4 3 16 16 C 1.50703 * 120.00379 * 175.34722 * 14 4 3 17 17 C 1.53007 * 109.46870 * 81.50799 * 16 14 4 18 18 O 1.42901 * 109.46989 * 321.51246 * 16 14 4 19 19 C 1.50693 * 109.47681 * 201.51368 * 16 14 4 20 20 C 1.38250 * 119.98231 * 296.05605 * 19 16 14 21 21 C 1.38215 * 120.00853 * 179.72591 * 20 19 16 22 22 C 1.38354 * 119.99141 * 0.54737 * 21 20 19 23 23 Cl 1.73595 * 120.01871 * 179.70331 * 22 21 20 24 24 C 1.38359 * 119.96874 * 359.72440 * 22 21 20 25 25 C 1.38212 * 119.98386 * 0.02562 * 24 22 21 26 26 H 1.07998 * 119.99333 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99891 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.99483 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46831 * 4.41295 * 3 2 1 30 30 H 1.08992 * 109.47110 * 244.40642 * 3 2 1 31 31 H 1.09000 * 109.47122 * 30.00538 * 5 4 3 32 32 H 1.09000 * 109.46948 * 150.00650 * 5 4 3 33 33 H 0.97004 * 119.99856 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.46887 * 60.00566 * 17 16 14 35 35 H 1.08996 * 109.46961 * 300.00522 * 17 16 14 36 36 H 1.09000 * 109.46731 * 180.02562 * 17 16 14 37 37 H 0.96699 * 114.00204 * 303.84415 * 18 16 14 38 38 H 1.07992 * 119.99251 * 359.97438 * 20 19 16 39 39 H 1.08004 * 120.00315 * 180.27212 * 21 20 19 40 40 H 1.07993 * 120.00400 * 179.97438 * 24 22 21 41 41 H 1.08005 * 119.98864 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9837 1.3375 1.1396 5 6 2.5079 1.7795 2.4528 6 6 2.6970 3.2691 2.5804 7 1 3.1289 3.8305 1.7650 8 6 2.3198 3.9153 3.7385 9 7 1.7944 3.2317 4.7316 10 14 2.5535 5.7618 3.8964 11 1 3.1596 6.2925 2.6489 12 1 1.2367 6.4101 4.1221 13 1 3.4507 6.0508 5.0439 14 6 4.2678 0.9610 0.9798 15 8 4.6413 0.5156 -0.0847 16 6 5.2399 1.0933 2.1238 17 6 5.0814 -0.1001 3.0682 18 8 4.9748 2.3031 2.8366 19 6 6.6473 1.1251 1.5862 20 6 7.1604 0.0231 0.9278 21 6 8.4493 0.0537 0.4295 22 6 9.2298 1.1834 0.5996 23 17 10.8513 1.2198 -0.0192 24 6 8.7175 2.2839 1.2635 25 6 7.4268 2.2538 1.7568 26 1 -0.5399 0.9354 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3579 2.1320 0.0791 30 1 2.6297 1.3977 -0.9268 31 1 1.4502 1.5373 2.5564 32 1 3.0748 1.2731 3.2340 33 1 1.5286 3.6863 5.5462 34 1 5.2836 -1.0230 2.5245 35 1 4.0634 -0.1231 3.4571 36 1 5.7842 -0.0042 3.8959 37 1 4.9991 3.0975 2.2857 38 1 6.5528 -0.8604 0.7993 39 1 8.8485 -0.8056 -0.0887 40 1 9.3264 3.1657 1.3970 41 1 7.0267 3.1130 2.2747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293683137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:26 Heat of formation + Delta-G solvation = -34.157965 kcal Electronic energy + Delta-G solvation = -25864.381953 eV Core-core repulsion = 22157.256477 eV Total energy + Delta-G solvation = -3707.125475 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.36416 -38.67068 -36.67413 -35.97341 -35.54439 -33.25492 -32.11460 -31.82174 -30.78539 -29.06270 -27.50794 -25.90572 -23.92412 -22.89378 -22.60474 -21.26744 -19.74626 -18.66334 -17.76910 -16.70534 -16.55648 -15.99105 -15.36974 -15.19021 -14.84167 -14.54671 -14.41353 -14.20354 -13.58861 -13.43805 -13.22447 -12.91182 -12.59526 -12.38635 -12.31674 -12.14027 -11.79028 -11.52122 -11.46208 -11.39105 -11.28790 -11.19754 -10.96876 -10.82579 -10.77908 -10.68615 -10.21081 -9.81313 -9.72049 -9.18694 -8.91334 -8.70348 -8.48494 -8.39037 -7.79997 -6.11718 -4.13629 1.22012 1.43937 2.14854 2.52528 3.15090 3.23304 3.32719 3.33567 3.66266 3.99120 4.35878 4.72047 4.86266 4.90910 4.97341 5.13811 5.26683 5.33798 5.42769 5.50145 5.51420 5.66667 5.76318 5.89059 6.02876 6.05799 6.09336 6.14057 6.28538 6.31642 6.33411 6.43999 6.71890 6.73792 6.88854 6.89958 7.04079 7.32416 7.54092 7.76724 8.12211 8.17605 8.30984 8.77240 8.89888 9.47781 10.96492 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.004490 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.230657 B = 6235.081015 C = 7814.996696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.140 3.860 4 N -0.580 5.580 5 C 0.236 3.764 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.071 3.929 9 N -0.887 5.887 10 Si 0.890 3.110 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.283 1.283 14 C 0.490 3.510 15 O -0.565 6.565 16 C 0.159 3.841 17 C -0.134 4.134 18 O -0.501 6.501 19 C -0.088 4.088 20 C -0.066 4.066 21 C -0.118 4.118 22 C -0.036 4.036 23 Cl -0.084 7.084 24 C -0.116 4.116 25 C -0.094 4.094 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.028 0.972 32 H 0.058 0.942 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.379 0.621 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.373 -5.248 -5.678 11.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C 0.017 3.983 4 N -0.309 5.309 5 C 0.117 3.883 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.132 4.132 9 N -0.526 5.526 10 Si 0.718 3.282 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.209 1.209 14 C 0.276 3.724 15 O -0.446 6.446 16 C 0.114 3.886 17 C -0.191 4.191 18 O -0.308 6.308 19 C -0.089 4.089 20 C -0.084 4.084 21 C -0.137 4.137 22 C -0.063 4.063 23 Cl -0.055 7.055 24 C -0.135 4.135 25 C -0.112 4.112 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.230 0.770 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.555 -5.827 -5.577 11.757 hybrid contribution 0.177 1.469 -0.307 1.511 sum 8.732 -4.358 -5.883 11.395 Atomic orbital electron populations 1.23779 0.95796 1.01585 1.01650 1.23334 0.96047 0.99181 0.98916 1.20468 0.92554 0.94856 0.90380 1.48305 1.07948 1.62112 1.12575 1.19692 0.95502 0.95526 0.77540 1.21237 1.41302 0.92272 1.00552 0.92631 1.24795 0.94976 0.97854 0.95559 1.69910 1.41718 1.35600 1.05372 0.86592 0.77836 0.85714 0.78093 1.19897 1.21202 1.20933 1.21168 0.83711 0.78254 0.89235 1.90617 1.78442 1.47120 1.28396 1.19926 0.87851 0.90209 0.90637 1.21812 1.04493 0.94019 0.98772 1.86994 1.92362 1.14105 1.37353 1.20409 0.96118 0.94380 0.97979 1.20917 0.93717 0.98645 0.95161 1.20975 0.94154 0.97220 1.01303 1.20906 0.86483 0.96836 1.02025 1.98345 1.22040 1.98703 1.86440 1.20949 0.96102 0.97503 0.98922 1.21016 0.93044 0.98476 0.98655 0.88420 0.88896 0.87897 0.89944 0.90174 0.95417 0.92394 0.92820 0.91580 0.90031 0.90939 0.77015 0.85012 0.85268 0.85162 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 14.32 29.01 0.42 -2.28 16 2 C -0.16 -2.49 9.84 -36.03 -0.35 -2.84 16 3 C 0.14 2.50 5.87 -5.19 -0.03 2.47 16 4 N -0.58 -11.44 2.44 -176.43 -0.43 -11.87 16 5 C 0.24 5.29 4.72 -5.19 -0.02 5.27 16 6 C -0.52 -12.27 6.37 -34.44 -0.22 -12.49 16 7 H 0.06 1.32 7.38 -52.48 -0.39 0.93 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -23.72 13.29 55.43 0.74 -22.99 16 10 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.49 9.45 6.54 -10.99 -0.07 9.37 16 15 O -0.56 -11.64 14.47 5.55 0.08 -11.56 16 16 C 0.16 2.76 0.79 -92.92 -0.07 2.69 16 17 C -0.13 -2.13 8.37 37.16 0.31 -1.82 16 18 O -0.50 -9.55 8.04 -35.23 -0.28 -9.84 16 19 C -0.09 -1.40 4.57 -104.62 -0.48 -1.88 16 20 C -0.07 -0.98 7.91 -39.59 -0.31 -1.30 16 21 C -0.12 -1.59 9.83 -39.55 -0.39 -1.98 16 22 C -0.04 -0.48 6.32 -39.49 -0.25 -0.73 16 23 Cl -0.08 -1.00 28.96 -51.86 -1.50 -2.50 16 24 C -0.12 -1.55 9.83 -39.55 -0.39 -1.94 16 25 C -0.09 -1.38 9.25 -39.59 -0.37 -1.74 16 26 H 0.10 1.34 7.84 -52.49 -0.41 0.93 16 27 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 29 H 0.08 1.46 7.76 -51.93 -0.40 1.06 16 30 H 0.08 1.43 7.35 -51.93 -0.38 1.05 16 31 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 32 H 0.06 1.36 4.29 -51.93 -0.22 1.14 16 33 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.07 0.93 7.18 -51.93 -0.37 0.55 16 35 H 0.08 1.42 6.12 -51.93 -0.32 1.10 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.38 6.99 6.55 45.56 0.30 7.29 16 38 H 0.13 1.92 7.02 -52.49 -0.37 1.55 16 39 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 40 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.14 1.92 6.59 -52.48 -0.35 1.57 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -27.25 352.88 -8.01 -35.26 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -4.58 Total: 11.02 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.33 Total: -7.52 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.31 Total: -34.85 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.20 Total: -21.40 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.25 -8.01 -35.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293683137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.103 kcal (2) G-P(sol) polarization free energy of solvation -27.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds