Wall clock time and date at job start Tue Mar 31 2020 13:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00355 * 2 1 4 4 N 1.46501 * 109.46665 * 124.40893 * 3 2 1 5 5 C 1.46505 * 119.99907 * 274.76149 * 4 3 2 6 6 C 1.50702 * 109.47090 * 270.00418 * 5 4 3 7 7 H 1.08005 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00063 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99868 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00204 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47107 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47729 * 119.99902 * 10 8 6 13 13 H 1.48503 * 109.46868 * 239.99830 * 10 8 6 14 14 C 1.34768 * 120.00027 * 94.76841 * 4 3 2 15 15 O 1.21289 * 120.00303 * 355.34616 * 14 4 3 16 16 C 1.50703 * 120.00379 * 175.34722 * 14 4 3 17 17 C 1.53007 * 109.46870 * 81.50799 * 16 14 4 18 18 O 1.42901 * 109.46989 * 321.51246 * 16 14 4 19 19 C 1.50693 * 109.47681 * 201.51368 * 16 14 4 20 20 C 1.38250 * 119.98231 * 296.05605 * 19 16 14 21 21 C 1.38215 * 120.00853 * 179.72591 * 20 19 16 22 22 C 1.38354 * 119.99141 * 0.54737 * 21 20 19 23 23 Cl 1.73595 * 120.01871 * 179.70331 * 22 21 20 24 24 C 1.38359 * 119.96874 * 359.72440 * 22 21 20 25 25 C 1.38212 * 119.98386 * 0.02562 * 24 22 21 26 26 H 1.07998 * 119.99333 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99891 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.99483 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46831 * 4.41295 * 3 2 1 30 30 H 1.08992 * 109.47110 * 244.40642 * 3 2 1 31 31 H 1.09000 * 109.47122 * 30.00538 * 5 4 3 32 32 H 1.09000 * 109.46948 * 150.00650 * 5 4 3 33 33 H 0.97004 * 119.99856 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.46887 * 60.00566 * 17 16 14 35 35 H 1.08996 * 109.46961 * 300.00522 * 17 16 14 36 36 H 1.09000 * 109.46731 * 180.02562 * 17 16 14 37 37 H 0.96699 * 114.00204 * 303.84415 * 18 16 14 38 38 H 1.07992 * 119.99251 * 359.97438 * 20 19 16 39 39 H 1.08004 * 120.00315 * 180.27212 * 21 20 19 40 40 H 1.07993 * 120.00400 * 179.97438 * 24 22 21 41 41 H 1.08005 * 119.98864 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9837 1.3375 1.1396 5 6 2.5079 1.7795 2.4528 6 6 2.6970 3.2691 2.5804 7 1 3.1289 3.8305 1.7650 8 6 2.3198 3.9153 3.7385 9 7 1.7944 3.2317 4.7316 10 14 2.5535 5.7618 3.8964 11 1 3.1596 6.2925 2.6489 12 1 1.2367 6.4101 4.1221 13 1 3.4507 6.0508 5.0439 14 6 4.2678 0.9610 0.9798 15 8 4.6413 0.5156 -0.0847 16 6 5.2399 1.0933 2.1238 17 6 5.0814 -0.1001 3.0682 18 8 4.9748 2.3031 2.8366 19 6 6.6473 1.1251 1.5862 20 6 7.1604 0.0231 0.9278 21 6 8.4493 0.0537 0.4295 22 6 9.2298 1.1834 0.5996 23 17 10.8513 1.2198 -0.0192 24 6 8.7175 2.2839 1.2635 25 6 7.4268 2.2538 1.7568 26 1 -0.5399 0.9354 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3579 2.1320 0.0791 30 1 2.6297 1.3977 -0.9268 31 1 1.4502 1.5373 2.5564 32 1 3.0748 1.2731 3.2340 33 1 1.5286 3.6863 5.5462 34 1 5.2836 -1.0230 2.5245 35 1 4.0634 -0.1231 3.4571 36 1 5.7842 -0.0042 3.8959 37 1 4.9991 3.0975 2.2857 38 1 6.5528 -0.8604 0.7993 39 1 8.8485 -0.8056 -0.0887 40 1 9.3264 3.1657 1.3970 41 1 7.0267 3.1130 2.2747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293683137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:25 Heat of formation + Delta-G solvation = -47.843142 kcal Electronic energy + Delta-G solvation = -25864.975386 eV Core-core repulsion = 22157.256477 eV Total energy + Delta-G solvation = -3707.718909 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.75356 -39.92802 -37.88280 -37.34298 -36.93198 -34.89422 -33.74228 -33.11594 -31.89561 -30.26505 -29.28528 -27.34943 -25.39826 -24.50448 -23.71007 -22.55469 -21.02086 -20.14371 -19.08788 -18.45132 -18.00092 -17.44226 -16.66461 -16.49840 -16.32777 -16.09169 -15.85734 -15.39159 -14.92576 -14.53560 -14.45263 -14.34822 -14.08970 -13.86481 -13.70122 -13.61587 -13.24377 -12.99146 -12.85951 -12.78346 -12.57557 -12.47754 -12.43553 -12.28974 -12.22826 -11.93717 -11.74880 -11.53042 -11.31312 -10.52180 -10.44390 -10.11988 -9.94795 -9.58589 -9.43187 -8.04445 -6.10651 0.10033 0.35298 1.12171 1.28525 1.46951 1.50909 1.58392 1.64294 2.34295 2.51259 2.72013 3.22387 3.45992 3.59438 3.63036 3.85037 3.95802 4.06741 4.19763 4.22093 4.40095 4.49789 4.51949 4.67673 4.74865 4.80310 4.80688 4.99160 5.00118 5.04133 5.10704 5.22968 5.24011 5.46603 5.56581 5.67305 5.69468 5.80233 5.83769 5.95544 6.22561 6.57669 6.76556 6.95951 7.28793 7.54436 9.03421 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.004490 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.230657 B = 6235.081015 C = 7814.996696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.179 4.179 3 C 0.139 3.861 4 N -0.584 5.584 5 C 0.254 3.746 6 C -0.506 4.506 7 H 0.056 0.944 8 C 0.028 3.972 9 N -0.922 5.922 10 Si 0.947 3.053 11 H -0.265 1.265 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.489 3.511 15 O -0.578 6.578 16 C 0.161 3.839 17 C -0.130 4.130 18 O -0.514 6.514 19 C -0.104 4.104 20 C -0.075 4.075 21 C -0.117 4.117 22 C -0.039 4.039 23 Cl -0.068 7.068 24 C -0.114 4.114 25 C -0.102 4.102 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.004 0.996 32 H 0.048 0.952 33 H 0.260 0.740 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.378 0.622 38 H 0.131 0.869 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.429 -5.127 -6.471 12.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.198 4.198 3 C 0.017 3.983 4 N -0.313 5.313 5 C 0.134 3.866 6 C -0.545 4.545 7 H 0.074 0.926 8 C -0.172 4.172 9 N -0.563 5.563 10 Si 0.774 3.226 11 H -0.189 1.189 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.276 3.724 15 O -0.459 6.459 16 C 0.116 3.884 17 C -0.187 4.187 18 O -0.321 6.321 19 C -0.105 4.105 20 C -0.093 4.093 21 C -0.135 4.135 22 C -0.066 4.066 23 Cl -0.039 7.039 24 C -0.133 4.133 25 C -0.120 4.120 26 H 0.120 0.880 27 H 0.135 0.865 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.229 0.771 38 H 0.149 0.851 39 H 0.168 0.832 40 H 0.169 0.831 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.619 -5.709 -6.395 12.885 hybrid contribution -0.125 1.384 -0.139 1.397 sum 9.494 -4.325 -6.534 12.310 Atomic orbital electron populations 1.24020 0.95149 1.02953 0.98473 1.23185 0.96681 0.98093 1.01811 1.20529 0.92348 0.95985 0.89464 1.48273 1.08645 1.62226 1.12158 1.19292 0.93831 0.94819 0.78630 1.21403 1.40000 0.92918 1.00150 0.92594 1.25414 0.95037 1.01274 0.95442 1.70019 1.43347 1.37029 1.05909 0.85680 0.77281 0.81518 0.78081 1.18924 1.21659 1.21211 1.21520 0.83650 0.77630 0.89606 1.90598 1.78577 1.47700 1.29072 1.19966 0.88463 0.89813 0.90112 1.21805 1.03509 0.94386 0.99032 1.86962 1.92652 1.14679 1.37837 1.20324 0.95344 0.95522 0.99340 1.20962 0.94461 0.98381 0.95484 1.21189 0.93550 0.98008 1.00779 1.21046 0.87233 0.96723 1.01595 1.98353 1.20744 1.98664 1.86161 1.21170 0.95695 0.98277 0.98133 1.21114 0.93638 0.98243 0.99015 0.88016 0.86468 0.88092 0.90245 0.90540 0.97744 0.93376 0.93046 0.89793 0.91899 0.90057 0.77076 0.85079 0.83243 0.83118 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.51 14.32 67.78 0.97 -3.54 16 2 C -0.18 -5.64 9.84 25.64 0.25 -5.38 16 3 C 0.14 4.98 5.87 85.63 0.50 5.48 16 4 N -0.58 -23.28 2.44 -830.50 -2.03 -25.31 16 5 C 0.25 11.59 4.72 85.63 0.40 12.00 16 6 C -0.51 -24.22 6.37 25.60 0.16 -24.05 16 7 H 0.06 2.64 7.38 -2.91 -0.02 2.62 16 8 C 0.03 1.39 5.46 84.65 0.46 1.85 16 9 N -0.92 -49.91 13.29 21.45 0.28 -49.63 16 10 Si 0.95 40.36 29.54 68.60 2.03 42.39 16 11 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 14 C 0.49 18.92 6.54 87.66 0.57 19.49 16 15 O -0.58 -23.73 14.47 -3.06 -0.04 -23.78 16 16 C 0.16 5.61 0.79 -12.28 -0.01 5.60 16 17 C -0.13 -4.15 8.37 71.98 0.60 -3.55 16 18 O -0.51 -19.75 8.04 -148.98 -1.20 -20.94 16 19 C -0.10 -3.25 4.57 -19.86 -0.09 -3.34 16 20 C -0.07 -2.14 7.91 22.27 0.18 -1.96 16 21 C -0.12 -2.93 9.83 22.29 0.22 -2.71 16 22 C -0.04 -0.97 6.32 22.33 0.14 -0.83 16 23 Cl -0.07 -1.46 28.96 -2.72 -0.08 -1.53 16 24 C -0.11 -2.84 9.83 22.29 0.22 -2.62 16 25 C -0.10 -2.89 9.25 22.26 0.21 -2.68 16 26 H 0.10 2.65 7.84 -2.91 -0.02 2.63 16 27 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 28 H 0.10 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.08 2.83 7.76 -2.39 -0.02 2.81 16 30 H 0.08 2.75 7.35 -2.39 -0.02 2.74 16 31 H 0.00 0.23 8.07 -2.39 -0.02 0.21 16 32 H 0.05 2.32 4.29 -2.39 -0.01 2.31 16 33 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 34 H 0.08 2.32 7.18 -2.39 -0.02 2.30 16 35 H 0.06 2.23 6.12 -2.39 -0.01 2.22 16 36 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.38 14.06 6.55 -74.06 -0.49 13.58 16 38 H 0.13 3.70 7.02 -2.91 -0.02 3.68 16 39 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.14 3.83 6.59 -2.91 -0.02 3.81 16 Total: -1.00 -56.91 352.88 4.33 -52.58 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.57 Total: 32.48 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 4.79 Total: -6.25 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -1.74 Total: -74.94 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -1.24 Total: -44.72 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.53 kcal Total: -56.91 4.33 -52.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293683137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.740 kcal (2) G-P(sol) polarization free energy of solvation -56.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds