Wall clock time and date at job start Tue Mar 31 2020 14:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99629 * 2 1 4 4 N 1.46505 * 109.46839 * 124.99907 * 3 2 1 5 5 C 1.46495 * 120.00314 * 269.99700 * 4 3 2 6 6 C 1.50702 * 109.47616 * 270.00385 * 5 4 3 7 7 H 1.07998 * 119.99622 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00148 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99899 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99983 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47092 * 59.99921 * 10 8 6 12 12 H 1.48501 * 109.46936 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47212 * 299.99953 * 10 8 6 14 14 C 1.34780 * 119.99647 * 90.00144 * 4 3 2 15 15 O 1.21278 * 119.99875 * 179.97438 * 14 4 3 16 16 C 1.50696 * 120.00128 * 0.02562 * 14 4 3 17 17 C 1.52998 * 109.47137 * 180.02562 * 16 14 4 18 18 H 1.09001 * 109.47411 * 55.00017 * 17 16 14 19 19 O 1.42906 * 109.47205 * 294.99818 * 17 16 14 20 20 C 1.50696 * 109.47396 * 174.99920 * 17 16 14 21 21 C 1.38247 * 119.98658 * 265.00270 * 20 17 16 22 22 C 1.38216 * 120.01497 * 179.97438 * 21 20 17 23 23 C 1.38357 * 119.98603 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.01134 * 180.02562 * 23 22 21 25 25 C 1.38347 * 119.97107 * 0.28224 * 23 22 21 26 26 C 1.38219 * 119.98930 * 359.40143 * 25 23 22 27 27 H 1.07996 * 119.99997 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99718 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.00351 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47433 * 5.00299 * 3 2 1 31 31 H 1.08994 * 109.47494 * 244.99873 * 3 2 1 32 32 H 1.09002 * 109.46802 * 30.00442 * 5 4 3 33 33 H 1.09000 * 109.47486 * 149.99959 * 5 4 3 34 34 H 0.97006 * 119.99797 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47543 * 59.99723 * 16 14 4 36 36 H 1.09003 * 109.46922 * 299.99788 * 16 14 4 37 37 H 0.96695 * 113.99566 * 299.99644 * 19 17 16 38 38 H 1.08003 * 119.99321 * 359.97438 * 21 20 17 39 39 H 1.08002 * 120.00776 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.00661 * 179.71600 * 25 23 22 41 41 H 1.07997 * 119.99445 * 180.32231 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5588 1.8649 2.4249 6 6 2.8441 3.3437 2.4805 7 1 3.3038 3.8370 1.6369 8 6 2.5192 4.0665 3.6087 9 7 1.9599 3.4656 4.6362 10 14 2.8735 5.8993 3.6779 11 1 2.1377 6.5872 2.5868 12 1 2.4326 6.4395 4.9890 13 1 4.3314 6.1282 3.5127 14 6 4.2497 0.8662 0.9824 15 8 5.0199 0.8888 1.9189 16 6 4.6972 0.3186 -0.3483 17 6 6.1533 -0.1402 -0.2473 18 1 6.2540 -0.8523 0.5719 19 8 6.9929 0.9899 -0.0019 20 6 6.5631 -0.7993 -1.5390 21 6 6.4846 -2.1734 -1.6688 22 6 6.8598 -2.7786 -2.8534 23 6 7.3146 -2.0088 -3.9093 24 17 7.7854 -2.7681 -5.3978 25 6 7.3990 -0.6343 -3.7766 26 6 7.0173 -0.0298 -2.5937 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 1.4887 1.6966 2.5459 33 1 3.0989 1.3603 3.2260 34 1 1.7309 3.9742 5.4298 35 1 4.6126 1.0955 -1.1081 36 1 4.0681 -0.5282 -0.6228 37 1 6.9540 1.6659 -0.6922 38 1 6.1299 -2.7743 -0.8443 39 1 6.7980 -3.8520 -2.9549 40 1 7.7583 -0.0334 -4.5989 41 1 7.0783 1.0437 -2.4918 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293950960.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:29 Heat of formation + Delta-G solvation = -48.363663 kcal Electronic energy + Delta-G solvation = -24482.851044 eV Core-core repulsion = 20775.109564 eV Total energy + Delta-G solvation = -3707.741480 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.16362 -39.01099 -37.19672 -36.37685 -35.54353 -33.21924 -32.19663 -31.97211 -31.31449 -29.86034 -27.44845 -25.51392 -24.56357 -23.15555 -22.52874 -21.16958 -19.98220 -18.61605 -17.83069 -16.65275 -16.55515 -16.25846 -16.04472 -15.53815 -15.07052 -14.96952 -14.53086 -14.24504 -13.98933 -13.81398 -13.75864 -13.68293 -12.93857 -12.60259 -12.49409 -12.29047 -11.90507 -11.77597 -11.69319 -11.56897 -11.26506 -11.15922 -11.02203 -10.98875 -10.89952 -10.58503 -10.20170 -10.12653 -9.64986 -9.36644 -9.21812 -9.01333 -8.74479 -8.41964 -7.67594 -6.03072 -4.07810 0.78988 0.96782 1.81404 2.41859 3.26407 3.32107 3.36957 3.38206 3.44935 3.92151 4.40972 4.42178 4.48259 4.52745 4.56057 4.89281 5.00656 5.02258 5.11896 5.21619 5.30100 5.33210 5.35969 5.39744 5.56605 5.61604 5.69509 5.84170 5.89497 5.89974 5.98435 6.16534 6.29298 6.45275 6.75749 6.88450 7.08741 7.45811 7.55677 7.69819 7.93180 8.24631 8.41447 8.91276 9.11091 9.57176 11.05015 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.002789 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.501816 B =10035.503769 C =10850.908209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.168 4.168 3 C 0.137 3.863 4 N -0.596 5.596 5 C 0.248 3.752 6 C -0.526 4.526 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.505 3.495 15 O -0.523 6.523 16 C -0.171 4.171 17 C 0.164 3.836 18 H 0.116 0.884 19 O -0.533 6.533 20 C -0.104 4.104 21 C -0.097 4.097 22 C -0.108 4.108 23 C -0.039 4.039 24 Cl -0.075 7.075 25 C -0.107 4.107 26 C -0.100 4.100 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.366 0.634 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.569 -11.642 -19.421 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C 0.013 3.987 4 N -0.328 5.328 5 C 0.129 3.871 6 C -0.564 4.564 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.291 3.709 15 O -0.399 6.399 16 C -0.211 4.211 17 C 0.104 3.896 18 H 0.134 0.866 19 O -0.337 6.337 20 C -0.105 4.105 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.065 4.065 24 Cl -0.047 7.047 25 C -0.125 4.125 26 C -0.118 4.118 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.213 0.787 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.099 -11.977 -18.285 22.693 hybrid contribution -0.151 1.166 -0.698 1.367 sum 5.947 -10.811 -18.983 22.641 Atomic orbital electron populations 1.23821 0.95872 1.01768 1.00558 1.23424 0.96401 0.99016 0.99931 1.20561 0.93159 0.95276 0.89750 1.48231 1.10464 1.60553 1.13502 1.19248 0.95287 0.93731 0.78811 1.21384 1.40500 0.93354 1.01208 0.92576 1.24929 0.95078 0.98728 0.95347 1.69927 1.42038 1.36243 1.05180 0.86572 0.78860 0.84942 0.77120 1.20315 1.21202 1.20128 1.20083 0.82359 0.79090 0.89352 1.90724 1.52048 1.55522 1.41629 1.22498 0.97642 1.02719 0.98248 1.20567 0.87673 0.88353 0.92979 0.86623 1.86817 1.66195 1.30854 1.49807 1.20876 0.98395 0.94429 0.96788 1.21015 0.99107 0.94042 0.97392 1.21054 0.99235 1.00286 0.92069 1.20949 1.03730 0.93318 0.88509 1.98371 1.90727 1.81997 1.33559 1.21018 1.00327 0.92617 0.98565 1.20898 0.98555 1.00311 0.92026 0.88278 0.88802 0.87881 0.89542 0.90978 0.95103 0.93937 0.92687 0.89081 0.88650 0.78741 0.84680 0.84838 0.84857 0.85007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 14.32 29.01 0.42 -1.87 16 2 C -0.17 -2.28 9.74 -36.03 -0.35 -2.63 16 3 C 0.14 2.12 5.65 -5.19 -0.03 2.09 16 4 N -0.60 -12.16 2.44 -176.44 -0.43 -12.59 16 5 C 0.25 6.44 5.16 -5.20 -0.03 6.41 16 6 C -0.53 -14.80 9.39 -34.44 -0.32 -15.13 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 10 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.51 9.97 7.55 -10.99 -0.08 9.88 16 15 O -0.52 -12.90 15.00 -8.89 -0.13 -13.03 16 16 C -0.17 -2.25 3.92 -27.89 -0.11 -2.36 16 17 C 0.16 2.12 2.76 -27.89 -0.08 2.04 16 18 H 0.12 1.65 7.87 -51.93 -0.41 1.24 16 19 O -0.53 -7.92 12.37 -49.68 -0.61 -8.54 16 20 C -0.10 -1.07 5.01 -104.62 -0.52 -1.59 16 21 C -0.10 -0.90 9.68 -39.59 -0.38 -1.28 16 22 C -0.11 -0.94 9.83 -39.55 -0.39 -1.33 16 23 C -0.04 -0.35 6.32 -39.50 -0.25 -0.60 16 24 Cl -0.08 -0.65 28.96 -51.86 -1.50 -2.15 16 25 C -0.11 -0.93 9.83 -39.55 -0.39 -1.32 16 26 C -0.10 -0.90 9.33 -39.59 -0.37 -1.27 16 27 H 0.10 1.23 7.84 -52.49 -0.41 0.82 16 28 H 0.09 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.10 1.29 7.83 -52.49 -0.41 0.88 16 30 H 0.09 1.42 7.72 -51.93 -0.40 1.02 16 31 H 0.07 0.91 6.44 -51.93 -0.33 0.58 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.09 1.03 7.40 -51.93 -0.38 0.65 16 36 H 0.10 1.06 7.78 -51.93 -0.40 0.65 16 37 H 0.37 3.97 7.39 45.56 0.34 4.31 16 38 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.13 0.95 6.61 -52.49 -0.35 0.60 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -34.38 367.57 -9.22 -43.60 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.81 Total: 3.56 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.98 Total: -7.30 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.31 Total: -38.50 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.75 Total: -21.57 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.38 -9.22 -43.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293950960.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.765 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds