Wall clock time and date at job start Tue Mar 31 2020 14:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46861 * 2 1 4 4 N 1.46498 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.37098 * 119.99590 * 89.44367 * 4 3 2 6 6 H 1.08002 * 119.99942 * 176.65050 * 5 4 3 7 7 C 1.38953 * 120.00136 * 356.64526 * 5 4 3 8 8 N 1.31410 * 119.99987 * 333.93683 * 7 5 4 9 9 Si 1.86801 * 119.99996 * 153.94021 * 7 5 4 10 10 H 1.48506 * 109.47090 * 89.99825 * 9 7 5 11 11 H 1.48496 * 109.47287 * 210.00019 * 9 7 5 12 12 H 1.48506 * 109.47100 * 329.99904 * 9 7 5 13 13 C 1.34774 * 120.00166 * 269.43975 * 4 3 2 14 14 O 1.21286 * 119.99834 * 2.92468 * 13 4 3 15 15 C 1.50704 * 119.99723 * 182.91936 * 13 4 3 16 16 H 1.09000 * 109.69533 * 328.87081 * 15 13 4 17 17 C 1.53414 * 109.69733 * 89.43149 * 15 13 4 18 18 O 1.42819 * 108.36441 * 184.47709 * 17 15 13 19 19 C 1.35867 * 117.85235 * 310.79157 * 18 17 15 20 20 C 1.39137 * 118.48114 * 197.11635 * 19 18 17 21 21 C 1.37969 * 120.23500 * 180.17834 * 20 19 18 22 22 C 1.38390 * 119.94081 * 0.03393 * 21 20 19 23 23 Cl 1.73602 * 120.01801 * 179.97438 * 22 21 20 24 24 C 1.38195 * 119.95583 * 359.77214 * 22 21 20 25 25 C 1.38364 * 121.79946 * 17.19556 * 19 18 17 26 26 C 1.50765 * 121.41515 * 359.59939 * 25 19 18 27 27 H 1.08998 * 109.47376 * 299.99642 * 1 2 3 28 28 H 1.08993 * 109.47310 * 60.00430 * 1 2 3 29 29 H 1.09010 * 109.46626 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46917 * 240.00301 * 2 1 3 31 31 H 1.08999 * 109.47160 * 120.00470 * 2 1 3 32 32 H 1.08998 * 109.46833 * 60.00026 * 3 2 1 33 33 H 1.09004 * 109.47162 * 300.00254 * 3 2 1 34 34 H 0.97001 * 119.99969 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.68144 * 64.76033 * 17 15 13 36 36 H 1.09000 * 109.68385 * 304.20080 * 17 15 13 37 37 H 1.08001 * 119.88522 * 0.20408 * 20 19 18 38 38 H 1.07996 * 120.02853 * 180.02562 * 21 20 19 39 39 H 1.08008 * 119.84444 * 180.02562 * 24 22 21 40 40 H 1.08994 * 109.44038 * 137.80240 * 26 25 19 41 41 H 1.09001 * 109.43302 * 257.66897 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1909 1.4309 -1.1864 6 1 5.2695 1.4856 -1.1873 7 6 3.4983 1.3486 -2.3882 8 7 2.3114 0.7858 -2.4254 9 14 4.2546 2.0380 -3.9511 10 1 5.0511 0.9804 -4.6237 11 1 3.1758 2.4995 -4.8612 12 1 5.1381 3.1820 -3.6106 13 6 4.1784 1.4542 1.1680 14 8 3.5727 1.4110 2.2179 15 6 5.6839 1.5208 1.1687 16 1 6.0742 1.0207 0.2823 17 6 6.1367 2.9865 1.1771 18 8 7.5607 3.0182 1.0717 19 6 8.2769 2.2220 1.9078 20 6 9.6311 2.4900 2.0812 21 6 10.3936 1.7022 2.9188 22 6 9.8107 0.6409 3.5890 23 17 10.7683 -0.3520 4.6430 24 6 8.4649 0.3747 3.4219 25 6 7.6957 1.1621 2.5811 26 6 6.2306 0.8417 2.4270 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.8282 0.7280 -3.2645 35 1 5.8267 3.4612 2.1081 36 1 5.6941 3.5124 0.3311 37 1 10.0871 3.3178 1.5586 38 1 11.4443 1.9135 3.0513 39 1 8.0117 -0.4537 3.9462 40 1 6.1022 -0.2373 2.3416 41 1 5.6866 1.2030 3.2997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299073812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:14 Heat of formation + Delta-G solvation = -53.324522 kcal Electronic energy + Delta-G solvation = -25341.487538 eV Core-core repulsion = 21633.530939 eV Total energy + Delta-G solvation = -3707.956599 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.71890 -38.77147 -37.60755 -36.18545 -35.47724 -33.77832 -32.33190 -31.63628 -30.44173 -30.04423 -26.11160 -25.53013 -24.92650 -23.43842 -22.64756 -20.87318 -19.91838 -19.07413 -17.74422 -17.32175 -16.66918 -16.19791 -15.78631 -14.92168 -14.59107 -14.46331 -14.37384 -13.88484 -13.77419 -13.57159 -13.39860 -13.14924 -13.04333 -12.72653 -12.36757 -12.15101 -12.14326 -11.77136 -11.44965 -11.41039 -11.04703 -10.89751 -10.86446 -10.70757 -10.50800 -10.43292 -10.37766 -10.28875 -10.12195 -9.54705 -8.91444 -8.87327 -8.48810 -8.02192 -7.92223 -6.50277 -3.97002 1.20677 1.23019 2.13520 3.01344 3.15333 3.18741 3.37539 3.61669 3.68818 3.97404 4.49914 4.72464 4.80150 4.86195 5.05035 5.13162 5.26138 5.36631 5.50596 5.57340 5.83408 5.86363 5.93017 5.99994 6.02881 6.12252 6.15797 6.22336 6.29904 6.39461 6.44217 6.48734 6.59048 6.64455 6.84874 6.93922 7.01043 7.24104 7.38641 7.50771 7.59217 7.79191 8.30905 8.94124 9.38837 9.79157 10.44141 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.003496 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.508688 B = 8007.573812 C = 8995.462061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 C 0.140 3.860 4 N -0.430 5.430 5 C -0.348 4.348 6 H 0.103 0.897 7 C 0.043 3.957 8 N -0.844 5.844 9 Si 0.910 3.090 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.453 3.547 14 O -0.608 6.608 15 C -0.129 4.129 16 H 0.105 0.895 17 C 0.077 3.923 18 O -0.310 6.310 19 C 0.142 3.858 20 C -0.141 4.141 21 C -0.084 4.084 22 C -0.070 4.070 23 Cl -0.081 7.081 24 C -0.075 4.075 25 C -0.136 4.136 26 C -0.063 4.063 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.103 0.897 31 H 0.029 0.971 32 H 0.039 0.961 33 H 0.091 0.909 34 H 0.270 0.730 35 H 0.067 0.933 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.083 0.917 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.869 1.374 5.594 11.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C 0.017 3.983 4 N -0.146 5.146 5 C -0.474 4.474 6 H 0.121 0.879 7 C -0.163 4.163 8 N -0.481 5.481 9 Si 0.736 3.264 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.240 3.760 14 O -0.496 6.496 15 C -0.150 4.150 16 H 0.123 0.877 17 C 0.002 3.998 18 O -0.223 6.223 19 C 0.095 3.905 20 C -0.159 4.159 21 C -0.103 4.103 22 C -0.097 4.097 23 Cl -0.052 7.052 24 C -0.094 4.094 25 C -0.137 4.137 26 C -0.101 4.101 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.121 0.879 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.101 0.899 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.516 1.361 5.856 11.256 hybrid contribution 0.229 -0.080 -0.804 0.840 sum 9.744 1.281 5.052 11.051 Atomic orbital electron populations 1.21579 0.97646 0.99782 1.00295 1.21846 0.93713 0.98255 1.02067 1.21333 0.79616 0.97201 1.00165 1.43882 1.05772 1.60253 1.04701 1.19688 0.92735 1.52408 0.82604 0.87909 1.25179 0.96082 0.95685 0.99328 1.70192 1.14166 1.36318 1.27386 0.86204 0.78980 0.79922 0.81292 1.20310 1.20628 1.19217 1.19422 0.87891 0.84649 0.83990 1.90532 1.69562 1.58050 1.31433 1.21718 0.96298 0.97064 0.99930 0.87745 1.22963 0.76469 0.96459 1.03914 1.86021 1.20475 1.60512 1.55297 1.18845 0.91446 0.89793 0.90376 1.20508 0.91609 1.02124 1.01694 1.20725 1.00071 0.93576 0.95901 1.20651 0.92306 0.96966 0.99767 1.98344 1.71902 1.69520 1.65458 1.20782 0.91426 0.99495 0.97659 1.19969 0.97496 0.96242 1.00010 1.20396 0.89069 1.01649 0.98955 0.94561 0.92987 0.94296 0.87927 0.95197 0.94264 0.89048 0.91967 0.91464 0.86291 0.84414 0.84687 0.84789 0.89889 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.91 37.16 0.37 -2.14 16 2 C -0.12 -2.66 5.68 -26.73 -0.15 -2.82 16 3 C 0.14 3.24 4.62 -4.04 -0.02 3.22 16 4 N -0.43 -10.14 2.62 -114.81 -0.30 -10.44 16 5 C -0.35 -8.13 9.21 -14.93 -0.14 -8.27 16 6 H 0.10 2.30 5.87 -52.49 -0.31 1.99 16 7 C 0.04 1.00 4.96 -17.47 -0.09 0.92 16 8 N -0.84 -19.83 8.16 55.50 0.45 -19.38 16 9 Si 0.91 18.20 29.63 -169.99 -5.04 13.17 16 10 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 12 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 13 C 0.45 10.22 6.73 -10.98 -0.07 10.15 16 14 O -0.61 -15.15 15.51 5.55 0.09 -15.06 16 15 C -0.13 -2.41 2.02 -91.52 -0.19 -2.59 16 16 H 0.10 2.03 6.18 -51.93 -0.32 1.71 16 17 C 0.08 1.30 6.31 37.37 0.24 1.54 16 18 O -0.31 -5.04 10.27 -19.32 -0.20 -5.24 16 19 C 0.14 2.15 6.47 -39.20 -0.25 1.89 16 20 C -0.14 -1.78 9.93 -39.35 -0.39 -2.18 16 21 C -0.08 -0.97 9.83 -39.62 -0.39 -1.36 16 22 C -0.07 -0.88 6.32 -39.54 -0.25 -1.13 16 23 Cl -0.08 -0.91 28.96 -51.86 -1.50 -2.42 16 24 C -0.07 -1.01 9.45 -39.50 -0.37 -1.38 16 25 C -0.14 -2.06 5.75 -104.44 -0.60 -2.66 16 26 C -0.06 -1.07 4.98 -27.81 -0.14 -1.20 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.10 2.47 6.02 -51.93 -0.31 2.16 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.92 7.44 -51.93 -0.39 0.53 16 33 H 0.09 2.18 6.00 -51.93 -0.31 1.87 16 34 H 0.27 6.05 8.31 -40.82 -0.34 5.71 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 37 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.09 1.67 7.42 -51.93 -0.39 1.28 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -25.69 347.04 -9.10 -34.79 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.39 Total: 7.37 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -2.45 Total: -8.02 kcal Atomic # 7 Polarization: -29.97 SS G_CDS: 0.15 Total: -29.82 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.11 Total: -20.30 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.04 Total: 13.17 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -25.69 -9.10 -34.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299073812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.534 kcal (2) G-P(sol) polarization free energy of solvation -25.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds