Wall clock time and date at job start Tue Mar 31 2020 14:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46861 * 2 1 4 4 N 1.46498 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.37098 * 119.99590 * 89.44367 * 4 3 2 6 6 H 1.08002 * 119.99942 * 176.65050 * 5 4 3 7 7 C 1.38953 * 120.00136 * 356.64526 * 5 4 3 8 8 N 1.31410 * 119.99987 * 333.93683 * 7 5 4 9 9 Si 1.86801 * 119.99996 * 153.94021 * 7 5 4 10 10 H 1.48506 * 109.47090 * 89.99825 * 9 7 5 11 11 H 1.48496 * 109.47287 * 210.00019 * 9 7 5 12 12 H 1.48506 * 109.47100 * 329.99904 * 9 7 5 13 13 C 1.34774 * 120.00166 * 269.43975 * 4 3 2 14 14 O 1.21286 * 119.99834 * 2.92468 * 13 4 3 15 15 C 1.50704 * 119.99723 * 182.91936 * 13 4 3 16 16 H 1.09000 * 109.69533 * 328.87081 * 15 13 4 17 17 C 1.53414 * 109.69733 * 89.43149 * 15 13 4 18 18 O 1.42819 * 108.36441 * 184.47709 * 17 15 13 19 19 C 1.35867 * 117.85235 * 310.79157 * 18 17 15 20 20 C 1.39137 * 118.48114 * 197.11635 * 19 18 17 21 21 C 1.37969 * 120.23500 * 180.17834 * 20 19 18 22 22 C 1.38390 * 119.94081 * 0.03393 * 21 20 19 23 23 Cl 1.73602 * 120.01801 * 179.97438 * 22 21 20 24 24 C 1.38195 * 119.95583 * 359.77214 * 22 21 20 25 25 C 1.38364 * 121.79946 * 17.19556 * 19 18 17 26 26 C 1.50765 * 121.41515 * 359.59939 * 25 19 18 27 27 H 1.08998 * 109.47376 * 299.99642 * 1 2 3 28 28 H 1.08993 * 109.47310 * 60.00430 * 1 2 3 29 29 H 1.09010 * 109.46626 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46917 * 240.00301 * 2 1 3 31 31 H 1.08999 * 109.47160 * 120.00470 * 2 1 3 32 32 H 1.08998 * 109.46833 * 60.00026 * 3 2 1 33 33 H 1.09004 * 109.47162 * 300.00254 * 3 2 1 34 34 H 0.97001 * 119.99969 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.68144 * 64.76033 * 17 15 13 36 36 H 1.09000 * 109.68385 * 304.20080 * 17 15 13 37 37 H 1.08001 * 119.88522 * 0.20408 * 20 19 18 38 38 H 1.07996 * 120.02853 * 180.02562 * 21 20 19 39 39 H 1.08008 * 119.84444 * 180.02562 * 24 22 21 40 40 H 1.08994 * 109.44038 * 137.80240 * 26 25 19 41 41 H 1.09001 * 109.43302 * 257.66897 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1909 1.4309 -1.1864 6 1 5.2695 1.4856 -1.1873 7 6 3.4983 1.3486 -2.3882 8 7 2.3114 0.7858 -2.4254 9 14 4.2546 2.0380 -3.9511 10 1 5.0511 0.9804 -4.6237 11 1 3.1758 2.4995 -4.8612 12 1 5.1381 3.1820 -3.6106 13 6 4.1784 1.4542 1.1680 14 8 3.5727 1.4110 2.2179 15 6 5.6839 1.5208 1.1687 16 1 6.0742 1.0207 0.2823 17 6 6.1367 2.9865 1.1771 18 8 7.5607 3.0182 1.0717 19 6 8.2769 2.2220 1.9078 20 6 9.6311 2.4900 2.0812 21 6 10.3936 1.7022 2.9188 22 6 9.8107 0.6409 3.5890 23 17 10.7683 -0.3520 4.6430 24 6 8.4649 0.3747 3.4219 25 6 7.6957 1.1621 2.5811 26 6 6.2306 0.8417 2.4270 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.8282 0.7280 -3.2645 35 1 5.8267 3.4612 2.1081 36 1 5.6941 3.5124 0.3311 37 1 10.0871 3.3178 1.5586 38 1 11.4443 1.9135 3.0513 39 1 8.0117 -0.4537 3.9462 40 1 6.1022 -0.2373 2.3416 41 1 5.6866 1.2030 3.2997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299073812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:13 Heat of formation + Delta-G solvation = -64.048066 kcal Electronic energy + Delta-G solvation = -25341.952546 eV Core-core repulsion = 21633.530939 eV Total energy + Delta-G solvation = -3708.421607 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.98218 -40.42282 -38.75304 -37.26131 -37.17050 -35.20027 -34.01671 -33.41405 -31.70967 -31.12221 -27.78016 -26.87555 -26.58910 -24.84982 -23.71718 -22.46031 -21.47464 -20.74034 -18.90528 -18.87281 -18.27857 -17.48951 -17.06802 -16.35344 -16.18236 -16.09680 -15.70044 -15.41524 -15.17126 -14.93769 -14.85998 -14.43752 -14.36013 -14.01334 -13.83803 -13.65451 -13.44647 -13.20808 -13.13602 -12.66983 -12.56697 -12.47531 -12.30105 -12.09257 -12.07906 -11.81878 -11.78494 -11.69082 -11.52971 -11.34489 -10.74692 -10.32593 -9.90946 -9.76329 -9.12275 -8.28274 -5.81040 0.15150 0.19341 1.16003 1.39676 1.51914 1.61068 1.90664 2.19655 2.30508 2.55338 2.89633 3.06280 3.58242 3.66288 3.74728 3.84396 4.06199 4.10892 4.23714 4.34518 4.41377 4.47747 4.51058 4.56027 4.62677 4.70487 4.85750 4.90037 4.92826 4.96416 5.05143 5.09029 5.20715 5.23445 5.29966 5.32044 5.45043 5.55227 5.58110 5.78026 5.94121 6.30374 6.48537 7.12479 7.57479 7.98183 8.66553 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.003496 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.508688 B = 8007.573812 C = 8995.462061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.111 4.111 3 C 0.142 3.858 4 N -0.440 5.440 5 C -0.367 4.367 6 H 0.109 0.891 7 C 0.009 3.991 8 N -0.860 5.860 9 Si 0.974 3.026 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.264 1.264 13 C 0.444 3.556 14 O -0.638 6.638 15 C -0.120 4.120 16 H 0.096 0.904 17 C 0.087 3.913 18 O -0.313 6.313 19 C 0.117 3.883 20 C -0.135 4.135 21 C -0.073 4.073 22 C -0.071 4.071 23 Cl -0.067 7.067 24 C -0.079 4.079 25 C -0.149 4.149 26 C -0.055 4.055 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.010 0.990 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.272 0.728 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.142 0.858 40 H 0.079 0.921 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.820 1.720 5.308 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.149 4.149 3 C 0.019 3.981 4 N -0.156 5.156 5 C -0.493 4.493 6 H 0.127 0.873 7 C -0.195 4.195 8 N -0.497 5.497 9 Si 0.798 3.202 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.189 1.189 13 C 0.233 3.767 14 O -0.528 6.528 15 C -0.141 4.141 16 H 0.114 0.886 17 C 0.011 3.989 18 O -0.227 6.227 19 C 0.071 3.929 20 C -0.153 4.153 21 C -0.091 4.091 22 C -0.098 4.098 23 Cl -0.038 7.038 24 C -0.098 4.098 25 C -0.151 4.151 26 C -0.093 4.093 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.029 0.971 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.135 0.865 37 H 0.178 0.822 38 H 0.185 0.815 39 H 0.160 0.840 40 H 0.098 0.902 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.477 1.700 5.571 12.871 hybrid contribution -0.324 -0.253 -0.651 0.770 sum 11.153 1.446 4.919 12.276 Atomic orbital electron populations 1.21494 0.94817 1.01223 1.00856 1.21706 0.96207 0.96990 1.00021 1.21284 0.80003 0.97683 0.99138 1.44098 1.05978 1.60216 1.05280 1.19946 0.93206 1.53378 0.82788 0.87332 1.25896 0.96621 0.95390 1.01629 1.70266 1.14997 1.36297 1.28156 0.85231 0.78096 0.79081 0.77759 1.20294 1.20565 1.18858 1.20036 0.89496 0.83849 0.83282 1.90496 1.70657 1.59302 1.32307 1.21599 0.93357 0.98700 1.00477 0.88600 1.22777 0.77320 0.94893 1.03905 1.86002 1.19614 1.60998 1.56062 1.19166 0.92489 0.90127 0.91104 1.20796 0.90434 1.02642 1.01469 1.21089 1.01392 0.92316 0.94349 1.20791 0.92064 0.97253 0.99706 1.98354 1.71316 1.69181 1.64972 1.20868 0.92037 0.99511 0.97402 1.19813 0.96413 0.97334 1.01504 1.20242 0.90525 1.01144 0.97362 0.93616 0.92733 0.92430 0.89802 0.97094 0.95212 0.89783 0.91714 0.91298 0.86509 0.82212 0.81537 0.84032 0.90230 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.91 71.98 0.71 -3.91 16 2 C -0.11 -5.01 5.68 30.60 0.17 -4.83 16 3 C 0.14 6.77 4.62 86.38 0.40 7.17 16 4 N -0.44 -21.36 2.62 -635.54 -1.67 -23.02 16 5 C -0.37 -17.39 9.21 84.04 0.77 -16.61 16 6 H 0.11 4.91 5.87 -2.91 -0.02 4.90 16 7 C 0.01 0.43 4.96 84.93 0.42 0.85 16 8 N -0.86 -40.62 8.16 21.66 0.18 -40.44 16 9 Si 0.97 37.01 29.63 68.60 2.03 39.04 16 10 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 11 H -0.28 -10.56 7.11 99.48 0.71 -9.86 16 12 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 13 C 0.44 20.76 6.73 87.66 0.59 21.35 16 14 O -0.64 -32.98 15.51 -3.05 -0.05 -33.03 16 15 C -0.12 -4.61 2.02 -11.37 -0.02 -4.63 16 16 H 0.10 3.82 6.18 -2.39 -0.01 3.81 16 17 C 0.09 2.96 6.31 72.12 0.45 3.41 16 18 O -0.31 -9.99 10.27 -92.06 -0.95 -10.94 16 19 C 0.12 3.41 6.47 22.52 0.15 3.55 16 20 C -0.13 -3.07 9.93 22.42 0.22 -2.84 16 21 C -0.07 -1.45 9.83 22.24 0.22 -1.23 16 22 C -0.07 -1.62 6.32 22.30 0.14 -1.48 16 23 Cl -0.07 -1.35 28.96 -2.72 -0.08 -1.43 16 24 C -0.08 -2.05 9.45 22.33 0.21 -1.84 16 25 C -0.15 -4.47 5.75 -19.75 -0.11 -4.59 16 26 C -0.06 -1.91 4.98 29.89 0.15 -1.76 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.08 4.13 6.02 -2.39 -0.01 4.11 16 31 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.03 1.44 7.44 -2.39 -0.02 1.42 16 33 H 0.08 4.11 6.00 -2.39 -0.01 4.09 16 34 H 0.27 12.17 8.31 -92.71 -0.77 11.40 16 35 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 37 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 39 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.08 2.97 7.42 -2.39 -0.02 2.95 16 Total: -1.00 -55.11 347.04 5.00 -50.12 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 1.05 Total: 27.10 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 4.48 Total: -7.40 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: -1.49 Total: -63.46 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -0.99 Total: -43.97 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -55.11 5.00 -50.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299073812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.932 kcal (2) G-P(sol) polarization free energy of solvation -55.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds