Wall clock time and date at job start Tue Mar 31 2020 14:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47407 * 2 1 4 4 N 1.46491 * 109.47144 * 179.97438 * 3 2 1 5 5 C 1.37103 * 119.99873 * 89.99857 * 4 3 2 6 6 H 1.07994 * 119.99987 * 303.72054 * 5 4 3 7 7 C 1.38949 * 119.99830 * 123.71624 * 5 4 3 8 8 N 1.31411 * 120.00047 * 337.83239 * 7 5 4 9 9 Si 1.86800 * 120.00284 * 157.83240 * 7 5 4 10 10 H 1.48505 * 109.46767 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47079 * 119.99987 * 9 7 5 12 12 H 1.48494 * 109.47172 * 240.00180 * 9 7 5 13 13 C 1.34780 * 120.00305 * 270.00231 * 4 3 2 14 14 O 1.21293 * 120.00045 * 4.05868 * 13 4 3 15 15 C 1.50700 * 120.00246 * 184.05808 * 13 4 3 16 16 H 1.09007 * 109.69332 * 48.98968 * 15 13 4 17 17 C 1.53401 * 109.70049 * 288.43011 * 15 13 4 18 18 O 1.42834 * 108.37692 * 175.58335 * 17 15 13 19 19 C 1.35866 * 117.85719 * 49.18936 * 18 17 15 20 20 C 1.39138 * 118.48249 * 162.80517 * 19 18 17 21 21 C 1.37968 * 120.23550 * 179.80847 * 20 19 18 22 22 C 1.38393 * 119.94228 * 359.97438 * 21 20 19 23 23 Cl 1.73598 * 120.02336 * 180.10133 * 22 21 20 24 24 C 1.38200 * 119.95209 * 0.08218 * 22 21 20 25 25 C 1.38363 * 121.79980 * 342.74864 * 19 18 17 26 26 C 1.50765 * 121.40585 * 0.53355 * 25 19 18 27 27 H 1.09004 * 109.46844 * 59.99388 * 1 2 3 28 28 H 1.08997 * 109.47611 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46862 * 300.00332 * 1 2 3 30 30 H 1.08997 * 109.46699 * 239.99931 * 2 1 3 31 31 H 1.09002 * 109.46575 * 120.00155 * 2 1 3 32 32 H 1.09000 * 109.46930 * 299.99940 * 3 2 1 33 33 H 1.09006 * 109.46895 * 59.99773 * 3 2 1 34 34 H 0.97002 * 120.00409 * 177.24520 * 8 7 5 35 35 H 1.08999 * 109.68488 * 295.30172 * 17 15 13 36 36 H 1.08999 * 109.68843 * 55.82145 * 17 15 13 37 37 H 1.08000 * 119.88532 * 359.82513 * 20 19 18 38 38 H 1.07996 * 120.03024 * 179.97438 * 21 20 19 39 39 H 1.08011 * 119.84548 * 180.02562 * 24 22 21 40 40 H 1.09001 * 109.43518 * 222.07327 * 26 25 19 41 41 H 1.08998 * 109.43378 * 102.20692 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1910 1.4422 -1.1865 6 1 4.0116 0.6641 -1.9136 7 6 5.1170 2.4430 -1.4539 8 7 5.0422 3.5931 -0.8226 9 14 6.4682 2.1538 -2.7109 10 1 6.3332 0.7876 -3.2772 11 1 6.3522 3.1549 -3.8015 12 1 7.7929 2.2890 -2.0536 13 6 4.1785 1.4425 1.1681 14 8 3.5739 1.3683 2.2170 15 6 5.6826 1.5348 1.1703 16 1 6.0014 2.3536 0.5251 17 6 6.2824 0.2158 0.6665 18 8 7.7000 0.3691 0.5819 19 6 8.3480 0.8863 1.6582 20 6 9.7255 0.7125 1.7500 21 6 10.4204 1.2262 2.8255 22 6 9.7463 1.9175 3.8169 23 17 10.6190 2.5670 5.1698 24 6 8.3780 2.0907 3.7291 25 6 7.6758 1.5749 2.6524 26 6 6.1827 1.7762 2.5967 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 5.7118 4.2771 -0.9797 35 1 6.0409 -0.5871 1.3630 36 1 5.8785 -0.0187 -0.3183 37 1 10.2526 0.1738 0.9765 38 1 11.4894 1.0891 2.8936 39 1 7.8537 2.6308 4.5037 40 1 5.9428 2.7961 2.8975 41 1 5.6967 1.0749 3.2750 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299073815.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:17 Heat of formation + Delta-G solvation = -64.722459 kcal Electronic energy + Delta-G solvation = -25866.762806 eV Core-core repulsion = 22158.311955 eV Total energy + Delta-G solvation = -3708.450851 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55767 -38.75617 -37.44180 -36.06382 -35.18525 -33.98967 -33.07259 -31.21690 -30.30287 -29.88214 -26.19189 -25.21311 -24.92570 -23.35699 -22.50382 -21.11292 -20.11495 -19.05436 -17.56103 -17.34172 -16.17167 -16.08503 -15.49052 -15.19816 -14.52191 -14.46900 -14.35467 -14.10238 -13.72964 -13.49450 -13.34191 -13.04898 -13.04546 -12.64924 -12.33596 -12.20071 -11.97808 -11.82445 -11.38562 -11.32379 -11.28667 -11.23228 -10.95326 -10.69074 -10.64718 -10.53353 -10.42323 -10.16819 -10.04490 -9.95955 -8.93889 -8.67079 -8.43762 -7.85637 -7.43421 -6.56155 -4.43655 1.35010 1.37365 2.24448 3.06532 3.18847 3.21103 3.58994 3.77346 3.85622 4.01484 4.59340 4.71809 4.88892 4.95378 5.21729 5.28897 5.47755 5.53440 5.57752 5.60805 5.70387 5.78197 5.86155 6.02285 6.08322 6.12844 6.16626 6.23315 6.31164 6.34677 6.41305 6.45322 6.51344 6.60958 6.64665 6.75892 6.83394 6.94659 7.00180 7.28228 7.71104 7.84751 8.46014 8.76509 9.40468 9.84528 10.44745 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015488 B = 0.004233 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.456634 B = 6613.073014 C = 7635.860627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.116 3.884 4 N -0.449 5.449 5 C -0.355 4.355 6 H 0.086 0.914 7 C 0.059 3.941 8 N -0.847 5.847 9 Si 0.891 3.109 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.266 1.266 13 C 0.521 3.479 14 O -0.602 6.602 15 C -0.140 4.140 16 H 0.136 0.864 17 C 0.073 3.927 18 O -0.309 6.309 19 C 0.143 3.857 20 C -0.144 4.144 21 C -0.085 4.085 22 C -0.072 4.072 23 Cl -0.084 7.084 24 C -0.075 4.075 25 C -0.135 4.135 26 C -0.063 4.063 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.273 0.727 35 H 0.056 0.944 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.096 -4.321 3.695 8.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.168 5.168 5 C -0.482 4.482 6 H 0.103 0.897 7 C -0.149 4.149 8 N -0.481 5.481 9 Si 0.715 3.285 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.191 1.191 13 C 0.310 3.690 14 O -0.488 6.488 15 C -0.161 4.161 16 H 0.153 0.847 17 C -0.002 4.002 18 O -0.222 6.222 19 C 0.097 3.903 20 C -0.162 4.162 21 C -0.104 4.104 22 C -0.099 4.099 23 Cl -0.055 7.055 24 C -0.094 4.094 25 C -0.136 4.136 26 C -0.100 4.100 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.100 0.900 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.969 -4.155 4.097 8.347 hybrid contribution 0.595 0.361 -0.479 0.845 sum 6.563 -3.793 3.618 8.400 Atomic orbital electron populations 1.21688 0.96464 1.00766 1.01408 1.21828 0.94787 0.98913 1.01736 1.21419 0.83370 0.94889 1.01079 1.43257 1.03242 1.65344 1.04991 1.19288 1.21818 1.10070 0.97031 0.89674 1.25601 0.99367 0.93297 0.96640 1.70065 1.32901 1.03019 1.42153 0.86433 0.81885 0.79338 0.80801 1.18517 1.20549 1.19126 1.19889 0.88326 0.77265 0.83482 1.90513 1.70443 1.55575 1.32242 1.22061 0.95099 1.01280 0.97635 0.84691 1.23136 0.76034 0.96114 1.04903 1.86034 1.23029 1.77677 1.35469 1.18897 0.91763 0.92557 0.87073 1.20502 0.91670 1.04385 0.99682 1.20693 0.99918 0.97187 0.92556 1.20623 0.92456 1.04707 0.92113 1.98334 1.76569 1.85479 1.45111 1.20776 0.91745 0.99011 0.97829 1.20006 0.97371 1.00831 0.95401 1.20388 0.88401 1.03493 0.97760 0.93020 0.93399 0.93016 0.92240 0.92332 0.91651 0.92344 0.91709 0.92526 0.85050 0.84527 0.84805 0.84892 0.89993 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.13 -2.38 6.26 -26.73 -0.17 -2.55 16 3 C 0.12 2.43 5.35 -4.05 -0.02 2.41 16 4 N -0.45 -10.52 2.38 -114.81 -0.27 -10.79 16 5 C -0.35 -8.31 6.98 -14.93 -0.10 -8.41 16 6 H 0.09 1.94 7.92 -52.49 -0.42 1.52 16 7 C 0.06 1.39 3.26 -17.47 -0.06 1.34 16 8 N -0.85 -21.40 11.78 55.50 0.65 -20.75 16 9 Si 0.89 18.64 29.54 -169.99 -5.02 13.62 16 10 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.52 12.44 6.58 -10.98 -0.07 12.37 16 14 O -0.60 -15.38 15.36 5.55 0.09 -15.29 16 15 C -0.14 -3.00 1.84 -91.53 -0.17 -3.17 16 16 H 0.14 3.21 4.54 -51.93 -0.24 2.98 16 17 C 0.07 1.41 6.08 37.37 0.23 1.64 16 18 O -0.31 -5.86 10.27 -19.32 -0.20 -6.06 16 19 C 0.14 2.52 6.47 -39.20 -0.25 2.27 16 20 C -0.14 -2.12 9.93 -39.35 -0.39 -2.51 16 21 C -0.08 -1.13 9.83 -39.62 -0.39 -1.52 16 22 C -0.07 -1.02 6.32 -39.54 -0.25 -1.27 16 23 Cl -0.08 -1.05 28.96 -51.86 -1.50 -2.55 16 24 C -0.07 -1.15 9.45 -39.50 -0.37 -1.53 16 25 C -0.13 -2.36 5.75 -104.44 -0.60 -2.96 16 26 C -0.06 -1.22 4.78 -27.82 -0.13 -1.35 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 33 H 0.06 1.29 7.48 -51.93 -0.39 0.90 16 34 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.13 2.60 6.21 -51.93 -0.32 2.28 16 37 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 40 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 41 H 0.09 1.68 7.53 -51.93 -0.39 1.29 16 LS Contribution 349.59 15.07 5.27 5.27 Total: -1.00 -26.55 349.59 -8.91 -35.46 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.53 Total: 8.06 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.38 Total: -6.97 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.38 Total: -31.54 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.11 Total: -21.35 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.55 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.55 -8.91 -35.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299073815.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.263 kcal (2) G-P(sol) polarization free energy of solvation -26.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds