Wall clock time and date at job start Tue Mar 31 2020 14:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47407 * 2 1 4 4 N 1.46491 * 109.47144 * 179.97438 * 3 2 1 5 5 C 1.37103 * 119.99873 * 89.99857 * 4 3 2 6 6 H 1.07994 * 119.99987 * 303.72054 * 5 4 3 7 7 C 1.38949 * 119.99830 * 123.71624 * 5 4 3 8 8 N 1.31411 * 120.00047 * 337.83239 * 7 5 4 9 9 Si 1.86800 * 120.00284 * 157.83240 * 7 5 4 10 10 H 1.48505 * 109.46767 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47079 * 119.99987 * 9 7 5 12 12 H 1.48494 * 109.47172 * 240.00180 * 9 7 5 13 13 C 1.34780 * 120.00305 * 270.00231 * 4 3 2 14 14 O 1.21293 * 120.00045 * 4.05868 * 13 4 3 15 15 C 1.50700 * 120.00246 * 184.05808 * 13 4 3 16 16 H 1.09007 * 109.69332 * 48.98968 * 15 13 4 17 17 C 1.53401 * 109.70049 * 288.43011 * 15 13 4 18 18 O 1.42834 * 108.37692 * 175.58335 * 17 15 13 19 19 C 1.35866 * 117.85719 * 49.18936 * 18 17 15 20 20 C 1.39138 * 118.48249 * 162.80517 * 19 18 17 21 21 C 1.37968 * 120.23550 * 179.80847 * 20 19 18 22 22 C 1.38393 * 119.94228 * 359.97438 * 21 20 19 23 23 Cl 1.73598 * 120.02336 * 180.10133 * 22 21 20 24 24 C 1.38200 * 119.95209 * 0.08218 * 22 21 20 25 25 C 1.38363 * 121.79980 * 342.74864 * 19 18 17 26 26 C 1.50765 * 121.40585 * 0.53355 * 25 19 18 27 27 H 1.09004 * 109.46844 * 59.99388 * 1 2 3 28 28 H 1.08997 * 109.47611 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46862 * 300.00332 * 1 2 3 30 30 H 1.08997 * 109.46699 * 239.99931 * 2 1 3 31 31 H 1.09002 * 109.46575 * 120.00155 * 2 1 3 32 32 H 1.09000 * 109.46930 * 299.99940 * 3 2 1 33 33 H 1.09006 * 109.46895 * 59.99773 * 3 2 1 34 34 H 0.97002 * 120.00409 * 177.24520 * 8 7 5 35 35 H 1.08999 * 109.68488 * 295.30172 * 17 15 13 36 36 H 1.08999 * 109.68843 * 55.82145 * 17 15 13 37 37 H 1.08000 * 119.88532 * 359.82513 * 20 19 18 38 38 H 1.07996 * 120.03024 * 179.97438 * 21 20 19 39 39 H 1.08011 * 119.84548 * 180.02562 * 24 22 21 40 40 H 1.09001 * 109.43518 * 222.07327 * 26 25 19 41 41 H 1.08998 * 109.43378 * 102.20692 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1910 1.4422 -1.1865 6 1 4.0116 0.6641 -1.9136 7 6 5.1170 2.4430 -1.4539 8 7 5.0422 3.5931 -0.8226 9 14 6.4682 2.1538 -2.7109 10 1 6.3332 0.7876 -3.2772 11 1 6.3522 3.1549 -3.8015 12 1 7.7929 2.2890 -2.0536 13 6 4.1785 1.4425 1.1681 14 8 3.5739 1.3683 2.2170 15 6 5.6826 1.5348 1.1703 16 1 6.0014 2.3536 0.5251 17 6 6.2824 0.2158 0.6665 18 8 7.7000 0.3691 0.5819 19 6 8.3480 0.8863 1.6582 20 6 9.7255 0.7125 1.7500 21 6 10.4204 1.2262 2.8255 22 6 9.7463 1.9175 3.8169 23 17 10.6190 2.5670 5.1698 24 6 8.3780 2.0907 3.7291 25 6 7.6758 1.5749 2.6524 26 6 6.1827 1.7762 2.5967 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 5.7118 4.2771 -0.9797 35 1 6.0409 -0.5871 1.3630 36 1 5.8785 -0.0187 -0.3183 37 1 10.2526 0.1738 0.9765 38 1 11.4894 1.0891 2.8936 39 1 7.8537 2.6308 4.5037 40 1 5.9428 2.7961 2.8975 41 1 5.6967 1.0749 3.2750 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299073815.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:16 Heat of formation + Delta-G solvation = -76.693114 kcal Electronic energy + Delta-G solvation = -25867.281892 eV Core-core repulsion = 22158.311955 eV Total energy + Delta-G solvation = -3708.969938 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.98598 -40.44152 -38.72919 -37.19284 -36.95964 -35.61389 -34.56784 -32.95108 -31.67546 -31.11940 -27.77138 -26.76359 -26.59629 -24.82193 -23.72810 -22.56886 -21.72729 -20.71296 -19.04125 -18.86827 -17.63066 -17.48364 -17.23150 -16.77312 -16.14876 -16.05226 -15.78857 -15.50027 -15.16152 -14.93533 -14.85929 -14.47673 -14.36940 -14.05269 -13.85151 -13.57534 -13.52106 -13.22802 -13.09488 -12.90562 -12.78726 -12.58345 -12.38538 -12.16986 -12.08656 -11.98155 -11.79635 -11.64159 -11.51475 -11.50513 -10.72655 -10.28990 -9.93126 -9.28410 -9.12087 -8.40185 -6.32398 0.14375 0.17568 1.13519 1.38080 1.49216 1.55428 1.99175 2.23106 2.29135 2.54133 2.89473 2.93356 3.61814 3.67738 3.78293 3.95453 4.07646 4.11611 4.18880 4.25548 4.32691 4.37925 4.51331 4.53278 4.65385 4.71463 4.80701 4.84388 4.87131 4.96343 5.03853 5.07080 5.16805 5.18077 5.24379 5.31647 5.33813 5.42007 5.47468 5.55418 6.02075 6.32750 6.60234 6.92208 7.54173 7.99866 8.61585 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015488 B = 0.004233 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.456634 B = 6613.073014 C = 7635.860627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.111 3.889 4 N -0.457 5.457 5 C -0.360 4.360 6 H 0.093 0.907 7 C 0.033 3.967 8 N -0.881 5.881 9 Si 0.942 3.058 10 H -0.246 1.246 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.509 3.491 14 O -0.629 6.629 15 C -0.137 4.137 16 H 0.115 0.885 17 C 0.082 3.918 18 O -0.316 6.316 19 C 0.115 3.885 20 C -0.138 4.138 21 C -0.072 4.072 22 C -0.072 4.072 23 Cl -0.065 7.065 24 C -0.079 4.079 25 C -0.152 4.152 26 C -0.055 4.055 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.272 0.728 35 H 0.065 0.935 36 H 0.126 0.874 37 H 0.160 0.840 38 H 0.169 0.831 39 H 0.141 0.859 40 H 0.068 0.932 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 -5.343 3.328 10.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C -0.012 4.012 4 N -0.175 5.175 5 C -0.487 4.487 6 H 0.111 0.889 7 C -0.172 4.172 8 N -0.516 5.516 9 Si 0.764 3.236 10 H -0.169 1.169 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.299 3.701 14 O -0.517 6.517 15 C -0.158 4.158 16 H 0.133 0.867 17 C 0.007 3.993 18 O -0.230 6.230 19 C 0.070 3.930 20 C -0.157 4.157 21 C -0.090 4.090 22 C -0.098 4.098 23 Cl -0.036 7.036 24 C -0.098 4.098 25 C -0.153 4.153 26 C -0.092 4.092 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.177 0.823 38 H 0.187 0.813 39 H 0.158 0.842 40 H 0.087 0.913 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.746 -5.187 3.716 10.036 hybrid contribution 0.079 0.735 -0.279 0.790 sum 7.825 -4.452 3.438 9.637 Atomic orbital electron populations 1.21644 0.93563 1.02461 1.01964 1.21703 0.97243 0.96131 1.01047 1.21549 0.82409 0.97085 1.00143 1.43494 1.04256 1.64732 1.05049 1.19516 1.22017 1.10201 0.96933 0.88908 1.26154 1.00517 0.92757 0.97822 1.70138 1.33691 1.03958 1.43837 0.85651 0.79243 0.79869 0.78794 1.16882 1.20661 1.19777 1.20360 0.89465 0.77013 0.83276 1.90476 1.71224 1.56962 1.33018 1.21951 0.93543 1.01741 0.98560 0.86724 1.22944 0.76688 0.95070 1.04573 1.85993 1.22225 1.78281 1.36493 1.19243 0.92974 0.93763 0.87033 1.20812 0.90399 1.03938 1.00553 1.21086 1.01471 0.95293 0.91167 1.20763 0.92113 1.04147 0.92810 1.98346 1.75908 1.85186 1.44159 1.20861 0.92609 0.98920 0.97428 1.19867 0.96116 1.02545 0.96803 1.20215 0.90264 1.02428 0.96314 0.91858 0.91118 0.93106 0.91827 0.93982 0.91555 0.94158 0.91774 0.91681 0.85613 0.82251 0.81313 0.84154 0.91335 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.08 16 2 C -0.12 -4.34 6.26 30.60 0.19 -4.15 16 3 C 0.11 4.77 5.35 86.38 0.46 5.23 16 4 N -0.46 -21.91 2.38 -635.55 -1.51 -23.43 16 5 C -0.36 -16.96 6.98 84.04 0.59 -16.37 16 6 H 0.09 4.18 7.92 -2.91 -0.02 4.16 16 7 C 0.03 1.56 3.26 84.93 0.28 1.84 16 8 N -0.88 -45.49 11.78 21.66 0.26 -45.24 16 9 Si 0.94 37.94 29.54 68.60 2.03 39.97 16 10 H -0.25 -9.22 7.11 99.48 0.71 -8.52 16 11 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 12 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 13 C 0.51 25.17 6.58 87.66 0.58 25.74 16 14 O -0.63 -33.49 15.36 -3.07 -0.05 -33.53 16 15 C -0.14 -6.06 1.84 -11.38 -0.02 -6.08 16 16 H 0.12 5.63 4.54 -2.38 -0.01 5.62 16 17 C 0.08 3.22 6.08 72.12 0.44 3.66 16 18 O -0.32 -11.83 10.27 -92.04 -0.95 -12.78 16 19 C 0.12 3.95 6.47 22.52 0.15 4.10 16 20 C -0.14 -3.72 9.93 22.42 0.22 -3.49 16 21 C -0.07 -1.66 9.83 22.24 0.22 -1.45 16 22 C -0.07 -1.85 6.32 22.30 0.14 -1.71 16 23 Cl -0.06 -1.45 28.96 -2.72 -0.08 -1.53 16 24 C -0.08 -2.38 9.45 22.33 0.21 -2.17 16 25 C -0.15 -5.33 5.75 -19.75 -0.11 -5.44 16 26 C -0.05 -2.20 4.78 29.89 0.14 -2.06 16 27 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 2.78 8.04 -2.39 -0.02 2.76 16 33 H 0.04 1.85 7.48 -2.38 -0.02 1.83 16 34 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.13 5.00 6.21 -2.39 -0.01 4.99 16 37 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.14 3.87 8.06 -2.90 -0.02 3.84 16 40 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.08 3.19 7.53 -2.39 -0.02 3.18 16 Total: -1.00 -57.75 349.59 4.93 -52.83 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 1.04 Total: 29.13 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 4.19 Total: -5.41 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -1.26 Total: -68.67 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.99 Total: -46.31 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -57.75 4.93 -52.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299073815.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.868 kcal (2) G-P(sol) polarization free energy of solvation -57.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds