Wall clock time and date at job start Tue Mar 31 2020 13:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99944 * 2 1 4 4 N 1.46499 * 109.47093 * 124.99824 * 3 2 1 5 5 C 1.46503 * 119.99666 * 274.94246 * 4 3 2 6 6 C 1.50703 * 109.47130 * 263.11129 * 5 4 3 7 7 H 1.07997 * 120.00137 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99681 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00148 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99743 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47164 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47244 * 120.00576 * 10 8 6 13 13 H 1.48506 * 109.47194 * 240.00519 * 10 8 6 14 14 C 1.34776 * 120.00115 * 94.94726 * 4 3 2 15 15 O 1.21370 * 119.99772 * 3.68525 * 14 4 3 16 16 C 1.49311 * 120.00152 * 183.68574 * 14 4 3 17 17 O 1.21385 * 119.99754 * 354.26562 * 16 14 4 18 18 N 1.34768 * 119.99837 * 174.26103 * 16 14 4 19 19 C 1.38751 * 119.99924 * 180.02562 * 18 16 14 20 20 N 1.29677 * 124.94878 * 180.02562 * 19 18 16 21 21 C 1.31904 * 116.93090 * 180.02562 * 20 19 18 22 22 C 1.50701 * 122.72070 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.46939 * 304.97502 * 22 21 20 24 24 C 1.33532 * 114.56807 * 359.97438 * 21 20 19 25 25 S 1.70976 * 124.93976 * 0.02684 * 19 18 16 26 26 H 1.08001 * 119.99974 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99979 * 180.02562 * 1 2 3 28 28 H 1.07994 * 119.99713 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47155 * 4.99287 * 3 2 1 30 30 H 1.09000 * 109.46944 * 244.99945 * 3 2 1 31 31 H 1.09000 * 109.47046 * 23.11999 * 5 4 3 32 32 H 1.09002 * 109.46870 * 143.11967 * 5 4 3 33 33 H 0.97003 * 119.99790 * 179.97438 * 9 8 6 34 34 H 0.96999 * 120.00714 * 0.02562 * 18 16 14 35 35 H 1.09000 * 109.47235 * 64.97162 * 22 21 20 36 36 H 1.08995 * 109.47338 * 184.97374 * 22 21 20 37 37 H 1.09000 * 109.46880 * 299.99878 * 23 22 21 38 38 H 1.08995 * 109.47210 * 59.99794 * 23 22 21 39 39 H 1.08997 * 109.47315 * 180.02562 * 23 22 21 40 40 H 1.07998 * 125.97499 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5286 1.7633 2.4520 6 6 2.8689 3.2175 2.6541 7 1 3.3800 3.7656 1.8765 8 6 2.5266 3.8484 3.8313 9 7 1.9037 3.1810 4.7780 10 14 2.9477 5.6510 4.0815 11 1 3.6423 6.1691 2.8755 12 1 1.6999 6.4245 4.3041 13 1 3.8354 5.7925 5.2636 14 6 4.2773 0.9598 0.9575 15 8 4.6795 0.6666 -0.1495 16 6 5.2047 0.9081 2.1266 17 8 4.8331 1.2999 3.2137 18 7 6.4542 0.4265 1.9747 19 6 7.3158 0.3780 3.0612 20 7 8.5341 -0.0647 3.0240 21 6 9.2139 -0.0387 4.1540 22 6 10.6380 -0.5204 4.2592 23 6 10.7288 -1.9594 3.7475 24 6 8.5386 0.4500 5.1972 25 16 6.9256 0.8933 4.6441 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3586 2.1316 0.0894 30 1 2.6213 1.4026 -0.9314 31 1 1.4488 1.6301 2.5183 32 1 3.0164 1.1657 3.2221 33 1 1.6632 3.6248 5.6064 34 1 6.7512 0.1137 1.1059 35 1 11.2836 0.1203 3.6584 36 1 10.9579 -0.4842 5.3005 37 1 10.0832 -2.6000 4.3483 38 1 10.4089 -1.9956 2.7061 39 1 11.7587 -2.3080 3.8239 40 1 8.9150 0.5545 6.2040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340615260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:43 Heat of formation + Delta-G solvation = 16.132727 kcal Electronic energy + Delta-G solvation = -24904.975778 eV Core-core repulsion = 21234.367529 eV Total energy + Delta-G solvation = -3670.608250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.71403 -39.63964 -38.29178 -36.13402 -34.93529 -33.39799 -32.81861 -32.16569 -29.16422 -27.66499 -26.81058 -25.08908 -24.02373 -23.06204 -21.95687 -20.92417 -19.79660 -18.75956 -17.88305 -17.10721 -16.65109 -16.54266 -15.97432 -15.63946 -15.37611 -14.86701 -14.60175 -14.50557 -14.29203 -14.04679 -13.58397 -13.10987 -13.04876 -12.83704 -12.48674 -12.37063 -11.97138 -11.76574 -11.60723 -11.32283 -11.25589 -11.02808 -10.92576 -10.70506 -10.58590 -10.50716 -10.09438 -9.76775 -9.52305 -9.32404 -8.95443 -8.91336 -8.40070 -8.10789 -7.94776 -6.10985 -4.14674 0.89162 1.38552 1.83666 2.08461 2.29545 2.63907 2.95722 3.25500 3.33891 3.37102 3.62622 3.90260 4.37712 4.56834 4.78812 5.00999 5.20392 5.22975 5.25660 5.30123 5.37647 5.52097 5.68744 5.73508 5.81061 5.95069 6.02067 6.03989 6.15649 6.19318 6.38554 6.47934 6.78182 6.88293 6.92835 7.25701 7.31439 7.76551 7.90381 7.94640 7.98967 8.10480 8.40592 8.86731 9.49259 10.97545 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.004483 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.045566 B = 6243.778128 C = 8070.793970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 C 0.138 3.862 4 N -0.550 5.550 5 C 0.221 3.779 6 C -0.524 4.524 7 H 0.056 0.944 8 C 0.072 3.928 9 N -0.886 5.886 10 Si 0.891 3.109 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.517 3.483 15 O -0.552 6.552 16 C 0.489 3.511 17 O -0.417 6.417 18 N -0.609 5.609 19 C 0.249 3.751 20 N -0.516 5.516 21 C 0.091 3.909 22 C -0.045 4.045 23 C -0.143 4.143 24 C -0.333 4.333 25 S 0.261 5.739 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.263 0.737 34 H 0.428 0.572 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.670 -7.718 -2.025 11.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.181 4.181 3 C 0.016 3.984 4 N -0.279 5.279 5 C 0.102 3.898 6 C -0.563 4.563 7 H 0.074 0.926 8 C -0.131 4.131 9 N -0.524 5.524 10 Si 0.719 3.281 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.298 3.702 15 O -0.433 6.433 16 C 0.269 3.731 17 O -0.284 6.284 18 N -0.262 5.262 19 C -0.118 4.118 20 N -0.241 5.241 21 C -0.043 4.043 22 C -0.085 4.085 23 C -0.201 4.201 24 C -0.474 4.474 25 S 0.512 5.488 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.268 0.732 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.638 -7.257 -1.695 10.671 hybrid contribution 1.194 0.614 -0.100 1.346 sum 8.832 -6.643 -1.795 11.196 Atomic orbital electron populations 1.23818 0.95700 1.01860 1.00577 1.23275 0.96189 0.98827 0.99850 1.20648 0.92131 0.95529 0.90090 1.48272 1.06937 1.59008 1.13703 1.20146 0.96299 0.96561 0.76745 1.21256 1.38849 0.94489 1.01686 0.92595 1.24794 0.94772 0.98042 0.95497 1.69926 1.39773 1.36289 1.06429 0.86550 0.78177 0.85039 0.78326 1.19859 1.20947 1.20763 1.19217 0.83616 0.79989 0.87338 1.90698 1.76346 1.51329 1.24935 1.20782 0.81845 0.79284 0.91151 1.90897 1.71647 1.39802 1.26081 1.42569 1.11120 1.61329 1.11172 1.23390 0.91817 1.01797 0.94783 1.66053 1.04272 1.23776 1.29978 1.19715 0.97622 1.00270 0.86646 1.20090 0.89509 0.97061 1.01808 1.21666 1.01033 0.95198 1.02222 1.27324 1.01429 1.13871 1.04727 1.85471 1.08114 1.56893 0.98324 0.88228 0.88601 0.87628 0.89132 0.89205 0.94552 0.90897 0.92762 0.73199 0.90533 0.90509 0.92930 0.91773 0.92647 0.81180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 14.32 29.01 0.42 -1.97 16 2 C -0.16 -2.43 9.84 -36.03 -0.35 -2.78 16 3 C 0.14 2.34 5.90 -5.20 -0.03 2.31 16 4 N -0.55 -11.11 2.46 -176.99 -0.44 -11.55 16 5 C 0.22 5.22 4.79 -5.19 -0.02 5.19 16 6 C -0.52 -13.68 8.31 -34.44 -0.29 -13.96 16 7 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 8 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 9 N -0.89 -24.64 13.29 55.43 0.74 -23.91 16 10 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.52 10.27 7.66 -11.65 -0.09 10.18 16 15 O -0.55 -10.96 15.98 5.48 0.09 -10.87 16 16 C 0.49 9.53 7.72 -11.65 -0.09 9.44 16 17 O -0.42 -9.18 9.83 5.47 0.05 -9.12 16 18 N -0.61 -10.34 5.39 -13.55 -0.07 -10.42 16 19 C 0.25 4.25 8.18 -87.55 -0.72 3.53 16 20 N -0.52 -8.32 10.39 -11.32 -0.12 -8.44 16 21 C 0.09 1.28 6.07 -84.21 -0.51 0.77 16 22 C -0.04 -0.47 6.43 -27.88 -0.18 -0.65 16 23 C -0.14 -1.42 9.81 37.16 0.36 -1.06 16 24 C -0.33 -4.57 11.05 29.09 0.32 -4.25 16 25 S 0.26 4.37 20.21 -107.50 -2.17 2.19 16 26 H 0.10 1.26 7.84 -52.49 -0.41 0.84 16 27 H 0.10 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.09 1.50 7.76 -51.93 -0.40 1.10 16 30 H 0.09 1.47 7.24 -51.93 -0.38 1.10 16 31 H 0.04 0.90 8.02 -51.93 -0.42 0.48 16 32 H 0.07 1.86 5.41 -51.93 -0.28 1.58 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.43 6.53 8.30 -40.82 -0.34 6.19 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -29.42 359.34 -7.95 -37.37 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.14 Total: 4.79 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -1.28 Total: 8.58 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.11 Total: -54.31 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.14 Total: -20.00 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -2.17 Total: 2.19 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.42 -7.95 -37.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340615260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.502 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds