Wall clock time and date at job start Tue Mar 31 2020 13:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46714 * 2 1 4 4 C 1.52999 * 109.47304 * 119.99737 * 2 1 3 5 5 C 1.53006 * 109.46626 * 65.00546 * 4 2 1 6 6 N 1.46500 * 109.46998 * 179.97438 * 5 4 2 7 7 C 1.46504 * 119.99881 * 270.00232 * 6 5 4 8 8 C 1.50700 * 109.47207 * 89.99965 * 7 6 5 9 9 H 1.07995 * 120.00038 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99575 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00609 * 359.97438 * 10 8 7 12 12 Si 1.86810 * 119.99620 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47312 * 89.99824 * 12 10 8 14 14 H 1.48501 * 109.46743 * 209.99924 * 12 10 8 15 15 H 1.48502 * 109.46962 * 329.99770 * 12 10 8 16 16 C 1.38320 * 120.00052 * 89.99617 * 6 5 4 17 17 N 1.31629 * 127.50108 * 179.70693 * 16 6 5 18 18 C 1.31292 * 116.78891 * 179.78458 * 17 16 6 19 19 C 1.50705 * 121.06255 * 180.25597 * 18 17 16 20 20 F 1.39896 * 109.47176 * 195.27185 * 19 18 17 21 21 F 1.39898 * 109.47168 * 315.27591 * 19 18 17 22 22 F 1.39898 * 109.46688 * 75.27204 * 19 18 17 23 23 N 1.30129 * 117.87593 * 0.54819 * 18 17 16 24 24 S 1.69949 * 105.76070 * 359.70915 * 23 18 17 25 25 H 1.09001 * 109.47430 * 299.99351 * 1 2 3 26 26 H 1.08998 * 109.47381 * 60.00361 * 1 2 3 27 27 H 1.09006 * 109.46455 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47092 * 240.00621 * 2 1 3 29 29 H 1.08999 * 109.47112 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46851 * 300.00487 * 3 2 1 31 31 H 1.09001 * 109.46642 * 60.00167 * 3 2 1 32 32 H 1.08993 * 109.47839 * 305.00615 * 4 2 1 33 33 H 1.09000 * 109.47160 * 185.00177 * 4 2 1 34 34 H 1.09000 * 109.47050 * 299.99699 * 5 4 2 35 35 H 1.09001 * 109.46801 * 59.99811 * 5 4 2 36 36 H 1.09003 * 109.46763 * 209.99449 * 7 6 5 37 37 H 1.08995 * 109.47081 * 329.99868 * 7 6 5 38 38 H 0.96999 * 120.00338 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 -2.1955 1.1879 6 7 2.1242 -2.8862 2.3837 7 6 3.4526 -3.5041 2.3811 8 6 4.4743 -2.5007 2.8508 9 1 4.1651 -1.5025 3.1234 10 6 5.8038 -2.8569 2.9312 11 7 6.1804 -4.0722 2.5987 12 14 7.0701 -1.6133 3.5141 13 1 7.2126 -1.7061 4.9892 14 1 8.3778 -1.9003 2.8714 15 1 6.6267 -0.2451 3.1446 16 6 1.3317 -2.9550 3.5153 17 7 1.6183 -3.5379 4.6601 18 6 0.7066 -3.4713 5.6026 19 6 0.9364 -4.1005 6.9526 20 9 -0.2807 -4.1966 7.6356 21 9 1.4793 -5.3789 6.7849 22 9 1.8241 -3.3101 7.6904 23 7 -0.4041 -2.8497 5.3319 24 16 -0.2484 -2.3027 3.7304 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0278 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4427 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6055 -0.2618 2.1370 33 1 3.1264 -0.6442 1.2951 34 1 0.5491 -2.2724 1.1420 35 1 2.0700 -2.6549 0.3001 36 1 3.4543 -4.3646 3.0502 37 1 3.7002 -3.8290 1.3706 38 1 7.1157 -4.3229 2.6557 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342778547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:52 Heat of formation + Delta-G solvation = -107.321237 kcal Electronic energy + Delta-G solvation = -25710.128806 eV Core-core repulsion = 21492.310451 eV Total energy + Delta-G solvation = -4217.818355 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.097 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.97468 -47.50418 -47.44841 -39.87519 -37.86655 -35.66732 -32.89146 -31.63889 -29.29938 -28.11361 -27.18897 -27.15570 -24.19242 -23.41538 -21.72579 -19.97261 -19.78651 -18.97910 -18.38919 -17.92527 -17.24267 -16.68083 -16.39910 -15.24744 -15.09781 -14.86457 -14.30044 -14.26012 -14.14462 -13.87573 -13.84992 -13.61624 -13.60138 -13.57496 -12.97227 -12.90322 -12.65043 -12.24431 -12.00804 -11.75357 -11.56751 -11.44685 -11.25012 -11.18882 -10.90654 -10.82702 -10.65202 -10.57768 -10.47666 -10.12400 -9.68385 -9.31050 -9.27692 -8.60558 -7.51608 -6.21901 -4.29000 0.85147 1.20323 1.61478 2.58805 2.72815 3.21658 3.23167 3.28897 3.31411 3.79074 4.29550 4.31765 4.51038 4.83947 4.89663 4.98001 5.06698 5.13345 5.35449 5.49021 5.55962 5.64010 5.66943 5.73944 5.84142 5.88522 6.04492 6.06171 6.25303 6.40828 6.46994 6.58913 7.05881 7.23220 7.53791 7.72202 7.93929 7.97748 8.72827 9.36764 10.85187 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.008895 B = 0.005898 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.184798 B = 4746.271886 C = 7076.038001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.137 4.137 5 C 0.117 3.883 6 N -0.516 5.516 7 C 0.247 3.753 8 C -0.532 4.532 9 H 0.062 0.938 10 C 0.068 3.932 11 N -0.889 5.889 12 Si 0.898 3.102 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.371 3.629 17 N -0.551 5.551 18 C 0.235 3.765 19 C 0.567 3.433 20 F -0.162 7.162 21 F -0.157 7.157 22 F -0.161 7.161 23 N -0.485 5.485 24 S 0.175 5.825 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.286 4.675 -2.775 12.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.176 4.176 5 C -0.006 4.006 6 N -0.227 5.227 7 C 0.127 3.873 8 C -0.571 4.571 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.527 5.527 12 Si 0.725 3.275 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.198 1.198 16 C -0.007 4.007 17 N -0.288 5.288 18 C -0.059 4.059 19 C 0.507 3.493 20 F -0.143 7.143 21 F -0.138 7.138 22 F -0.143 7.143 23 N -0.323 5.323 24 S 0.311 5.689 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.107 5.004 -2.873 13.411 hybrid contribution 1.783 0.082 0.775 1.946 sum -10.323 5.086 -2.099 11.698 Atomic orbital electron populations 1.21943 0.95501 1.01745 1.01711 1.21064 0.95526 0.96392 0.98278 1.21813 1.01352 0.95785 1.01360 1.22159 1.03897 0.93795 0.97731 1.21895 0.98624 0.93203 0.86894 1.47165 1.16933 1.51949 1.06635 1.19763 0.74229 0.94255 0.99027 1.21302 0.91554 0.98349 1.45883 0.92032 1.24885 0.98348 0.95467 0.94866 1.69905 1.17422 1.18021 1.47359 0.86500 0.80530 0.81252 0.79220 1.20366 1.21026 1.19826 1.25102 0.93818 0.91639 0.90115 1.67021 1.31113 1.30695 1.00004 1.22656 0.88214 0.98991 0.96033 1.16735 0.74297 0.76384 0.81915 1.93227 1.44226 1.96001 1.80871 1.93261 1.85909 1.39226 1.95397 1.93256 1.68802 1.74107 1.78086 1.77303 1.23287 1.24266 1.07434 1.84641 1.14772 1.58164 1.11281 0.92534 0.92879 0.92577 0.90945 0.92418 0.92960 0.92800 0.91909 0.89096 0.91100 0.88705 0.92913 0.93765 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.95 37.16 0.33 -1.08 16 2 C -0.09 -1.00 2.92 -90.61 -0.26 -1.27 16 3 C -0.15 -1.51 9.19 37.16 0.34 -1.17 16 4 C -0.14 -1.88 5.01 -26.73 -0.13 -2.01 16 5 C 0.12 1.66 5.25 -4.04 -0.02 1.63 16 6 N -0.52 -9.67 2.55 -176.54 -0.45 -10.12 16 7 C 0.25 5.69 5.37 -5.19 -0.03 5.66 16 8 C -0.53 -13.50 8.92 -34.44 -0.31 -13.81 16 9 H 0.06 1.57 7.42 -52.49 -0.39 1.18 16 10 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 12 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 C 0.37 7.14 7.94 -86.35 -0.69 6.45 16 17 N -0.55 -11.74 9.98 -14.58 -0.15 -11.88 16 18 C 0.24 4.56 6.98 -159.03 -1.11 3.45 16 19 C 0.57 9.99 3.53 36.01 0.13 10.11 16 20 F -0.16 -2.61 16.96 2.25 0.04 -2.57 16 21 F -0.16 -2.79 17.24 2.25 0.04 -2.75 16 22 F -0.16 -2.87 17.30 2.25 0.04 -2.83 16 23 N -0.49 -8.91 11.73 29.54 0.35 -8.56 16 24 S 0.18 2.82 22.61 -107.50 -2.43 0.39 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.49 7.26 -51.93 -0.38 1.12 16 34 H 0.07 0.85 5.66 -51.93 -0.29 0.56 16 35 H 0.09 1.25 7.89 -51.93 -0.41 0.84 16 36 H 0.05 1.38 7.73 -51.93 -0.40 0.97 16 37 H 0.04 1.03 7.89 -51.93 -0.41 0.62 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -27.91 347.76 -8.17 -36.08 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -4.72 Total: -4.51 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -1.85 Total: 9.66 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.49 Total: -54.37 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 0.12 Total: -8.16 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.43 Total: 0.39 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.91 -8.17 -36.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342778547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.239 kcal (2) G-P(sol) polarization free energy of solvation -27.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds