Wall clock time and date at job start Tue Mar 31 2020 13:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46714 * 2 1 4 4 C 1.52999 * 109.47304 * 119.99737 * 2 1 3 5 5 C 1.53006 * 109.46626 * 65.00546 * 4 2 1 6 6 N 1.46500 * 109.46998 * 179.97438 * 5 4 2 7 7 C 1.46504 * 119.99881 * 270.00232 * 6 5 4 8 8 C 1.50700 * 109.47207 * 89.99965 * 7 6 5 9 9 H 1.07995 * 120.00038 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99575 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00609 * 359.97438 * 10 8 7 12 12 Si 1.86810 * 119.99620 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47312 * 89.99824 * 12 10 8 14 14 H 1.48501 * 109.46743 * 209.99924 * 12 10 8 15 15 H 1.48502 * 109.46962 * 329.99770 * 12 10 8 16 16 C 1.38320 * 120.00052 * 89.99617 * 6 5 4 17 17 N 1.31629 * 127.50108 * 179.70693 * 16 6 5 18 18 C 1.31292 * 116.78891 * 179.78458 * 17 16 6 19 19 C 1.50705 * 121.06255 * 180.25597 * 18 17 16 20 20 F 1.39896 * 109.47176 * 195.27185 * 19 18 17 21 21 F 1.39898 * 109.47168 * 315.27591 * 19 18 17 22 22 F 1.39898 * 109.46688 * 75.27204 * 19 18 17 23 23 N 1.30129 * 117.87593 * 0.54819 * 18 17 16 24 24 S 1.69949 * 105.76070 * 359.70915 * 23 18 17 25 25 H 1.09001 * 109.47430 * 299.99351 * 1 2 3 26 26 H 1.08998 * 109.47381 * 60.00361 * 1 2 3 27 27 H 1.09006 * 109.46455 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47092 * 240.00621 * 2 1 3 29 29 H 1.08999 * 109.47112 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46851 * 300.00487 * 3 2 1 31 31 H 1.09001 * 109.46642 * 60.00167 * 3 2 1 32 32 H 1.08993 * 109.47839 * 305.00615 * 4 2 1 33 33 H 1.09000 * 109.47160 * 185.00177 * 4 2 1 34 34 H 1.09000 * 109.47050 * 299.99699 * 5 4 2 35 35 H 1.09001 * 109.46801 * 59.99811 * 5 4 2 36 36 H 1.09003 * 109.46763 * 209.99449 * 7 6 5 37 37 H 1.08995 * 109.47081 * 329.99868 * 7 6 5 38 38 H 0.96999 * 120.00338 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 -2.1955 1.1879 6 7 2.1242 -2.8862 2.3837 7 6 3.4526 -3.5041 2.3811 8 6 4.4743 -2.5007 2.8508 9 1 4.1651 -1.5025 3.1234 10 6 5.8038 -2.8569 2.9312 11 7 6.1804 -4.0722 2.5987 12 14 7.0701 -1.6133 3.5141 13 1 7.2126 -1.7061 4.9892 14 1 8.3778 -1.9003 2.8714 15 1 6.6267 -0.2451 3.1446 16 6 1.3317 -2.9550 3.5153 17 7 1.6183 -3.5379 4.6601 18 6 0.7066 -3.4713 5.6026 19 6 0.9364 -4.1005 6.9526 20 9 -0.2807 -4.1966 7.6356 21 9 1.4793 -5.3789 6.7849 22 9 1.8241 -3.3101 7.6904 23 7 -0.4041 -2.8497 5.3319 24 16 -0.2484 -2.3027 3.7304 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0278 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4427 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6055 -0.2618 2.1370 33 1 3.1264 -0.6442 1.2951 34 1 0.5491 -2.2724 1.1420 35 1 2.0700 -2.6549 0.3001 36 1 3.4543 -4.3646 3.0502 37 1 3.7002 -3.8290 1.3706 38 1 7.1157 -4.3229 2.6557 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342778547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:52 Heat of formation + Delta-G solvation = -120.625174 kcal Electronic energy + Delta-G solvation = -25710.705708 eV Core-core repulsion = 21492.310451 eV Total energy + Delta-G solvation = -4218.395257 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.36541 -48.87820 -48.85222 -41.36417 -39.14929 -36.80900 -34.83241 -33.07745 -30.68693 -29.64837 -28.72732 -27.92517 -25.77282 -24.88970 -23.12918 -21.35530 -20.85561 -20.39686 -19.79422 -19.32076 -18.66898 -18.60535 -17.85536 -16.74926 -16.57435 -16.14593 -15.68635 -15.63618 -15.57874 -15.26080 -15.08470 -14.99524 -14.96366 -14.56713 -14.49567 -14.33497 -13.89815 -13.48750 -13.42057 -13.11689 -13.01328 -12.83781 -12.66037 -12.60535 -12.35190 -12.26928 -12.13459 -11.64317 -11.57704 -11.44883 -11.38978 -10.78712 -10.69955 -10.63205 -9.01512 -8.21285 -6.35484 -0.61746 -0.23883 0.20054 1.16420 1.25930 1.36855 1.40488 1.47697 1.84135 2.32612 2.41106 2.92887 3.09021 3.10352 3.65436 3.90175 3.93168 4.08675 4.18427 4.24373 4.45933 4.57144 4.73507 4.85409 4.90207 4.93306 5.10129 5.14675 5.15500 5.24797 5.38536 5.50820 5.55283 5.61172 5.75552 5.93611 5.98963 6.50555 6.73078 7.33192 8.83363 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.008895 B = 0.005898 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.184798 B = 4746.271886 C = 7076.038001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.130 4.130 5 C 0.112 3.888 6 N -0.521 5.521 7 C 0.265 3.735 8 C -0.532 4.532 9 H 0.056 0.944 10 C 0.020 3.980 11 N -0.921 5.921 12 Si 0.952 3.048 13 H -0.284 1.284 14 H -0.278 1.278 15 H -0.264 1.264 16 C 0.345 3.655 17 N -0.592 5.592 18 C 0.225 3.775 19 C 0.571 3.429 20 F -0.151 7.151 21 F -0.160 7.160 22 F -0.164 7.164 23 N -0.498 5.498 24 S 0.264 5.736 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.017 0.983 37 H 0.040 0.960 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.856 6.137 -3.643 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.169 4.169 5 C -0.009 4.009 6 N -0.232 5.232 7 C 0.143 3.857 8 C -0.571 4.571 9 H 0.074 0.926 10 C -0.180 4.180 11 N -0.561 5.561 12 Si 0.778 3.222 13 H -0.211 1.211 14 H -0.203 1.203 15 H -0.188 1.188 16 C -0.031 4.031 17 N -0.330 5.330 18 C -0.069 4.069 19 C 0.511 3.489 20 F -0.132 7.132 21 F -0.141 7.141 22 F -0.145 7.145 23 N -0.336 5.336 24 S 0.401 5.599 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.035 0.965 37 H 0.058 0.942 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.711 6.494 -3.757 15.630 hybrid contribution 2.146 -0.337 1.031 2.404 sum -11.566 6.157 -2.726 13.383 Atomic orbital electron populations 1.21937 0.93899 1.02430 1.02480 1.21046 0.96788 0.96171 0.96758 1.21818 1.00583 0.95754 1.02174 1.22070 1.01838 0.93830 0.99156 1.22211 1.00210 0.93017 0.85474 1.47053 1.15779 1.52471 1.07886 1.19199 0.76174 0.92803 0.97513 1.21532 0.92208 0.98395 1.44926 0.92592 1.25609 1.00256 0.96929 0.95232 1.70000 1.17737 1.19534 1.48785 0.85640 0.78689 0.79738 0.78148 1.21066 1.20314 1.18818 1.25321 0.95654 0.92343 0.89815 1.67012 1.32949 1.31849 1.01199 1.22694 0.88244 0.99652 0.96328 1.16614 0.74537 0.76124 0.81610 1.93244 1.43502 1.95932 1.80556 1.93251 1.86037 1.39435 1.95420 1.93246 1.69005 1.74197 1.78077 1.77136 1.23138 1.23864 1.09469 1.84242 1.10901 1.55768 1.08992 0.92652 0.91299 0.91913 0.90211 0.93693 0.91123 0.93011 0.92646 0.92292 0.88315 0.87693 0.96518 0.94182 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.95 71.98 0.64 -1.65 16 2 C -0.09 -1.70 2.92 -10.79 -0.03 -1.73 16 3 C -0.15 -2.75 9.19 71.99 0.66 -2.09 16 4 C -0.13 -3.42 5.01 30.60 0.15 -3.27 16 5 C 0.11 3.01 5.25 86.38 0.45 3.46 16 6 N -0.52 -19.40 2.55 -712.45 -1.82 -21.22 16 7 C 0.27 12.49 5.37 85.63 0.46 12.95 16 8 C -0.53 -27.45 8.92 25.60 0.23 -27.22 16 9 H 0.06 2.90 7.42 -2.91 -0.02 2.88 16 10 C 0.02 1.06 5.46 84.66 0.46 1.52 16 11 N -0.92 -51.84 13.29 21.45 0.28 -51.55 16 12 Si 0.95 42.70 29.54 68.60 2.03 44.73 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 16 C 0.35 13.05 7.94 178.86 1.42 14.48 16 17 N -0.59 -25.28 9.98 -200.05 -2.00 -27.28 16 18 C 0.22 8.59 6.98 139.39 0.97 9.56 16 19 C 0.57 19.95 3.53 71.24 0.25 20.20 16 20 F -0.15 -4.72 16.96 44.97 0.76 -3.95 16 21 F -0.16 -5.74 17.24 44.97 0.78 -4.97 16 22 F -0.16 -5.82 17.30 44.97 0.78 -5.04 16 23 N -0.50 -17.46 11.73 -60.46 -0.71 -18.17 16 24 S 0.26 7.89 22.61 -56.49 -1.28 6.61 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.87 6.56 -2.38 -0.02 0.86 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.94 7.26 -2.39 -0.02 1.92 16 34 H 0.10 2.09 5.66 -2.39 -0.01 2.07 16 35 H 0.10 2.61 7.89 -2.39 -0.02 2.60 16 36 H 0.02 0.91 7.73 -2.39 -0.02 0.89 16 37 H 0.04 1.91 7.89 -2.39 -0.02 1.89 16 38 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -60.29 347.76 5.59 -54.70 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: 1.09 Total: -0.07 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: 5.68 Total: 26.21 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -4.24 Total: -118.22 kcal Atomic # 9 Polarization: -16.27 SS G_CDS: 2.32 Total: -13.96 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 7.89 SS G_CDS: -1.28 Total: 6.61 kcal Total: -60.29 5.59 -54.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342778547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.927 kcal (2) G-P(sol) polarization free energy of solvation -60.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds