Wall clock time and date at job start Tue Mar 31 2020 13:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 S 1.65599 * 120.00012 * 165.00017 * 14 13 2 16 16 O 1.42097 * 106.40866 * 178.54114 * 15 14 13 17 17 O 1.42102 * 106.40573 * 311.46330 * 15 14 13 18 18 C 1.76207 * 107.21714 * 65.00092 * 15 14 13 19 19 C 1.38698 * 120.30478 * 90.00047 * 18 15 14 20 20 C 1.38495 * 118.50409 * 180.02562 * 19 18 15 21 21 C 1.39462 * 119.05105 * 0.02562 * 20 19 18 22 22 C 1.43195 * 119.73727 * 179.97438 * 21 20 19 23 23 N 8.95360 * 140.54838 * 108.83500 * 2 1 3 24 24 N 1.32790 * 120.52419 * 0.02562 * 21 20 19 25 25 C 1.31593 * 121.62161 * 359.66625 * 24 21 20 26 26 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 27 27 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 28 28 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 31 31 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 32 32 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 34 34 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 36 36 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 37 37 H 0.97001 * 120.00191 * 345.00817 * 14 13 2 38 38 H 1.07997 * 120.75275 * 0.02562 * 19 18 15 39 39 H 1.07996 * 120.47561 * 180.02562 * 20 19 18 40 40 H 1.07995 * 119.54540 * 180.30632 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 16 1.6258 -0.7782 3.9212 16 8 1.1157 0.1508 4.8677 17 8 1.0840 -2.0793 3.7397 18 6 3.3303 -0.9988 4.3093 19 6 4.0226 -0.0180 5.0038 20 6 5.3613 -0.2298 5.2886 21 6 5.9635 -1.4156 4.8688 22 6 7.3470 -1.6496 5.1548 23 7 8.4436 -1.8368 5.3847 24 7 5.2645 -2.3289 4.2050 25 6 3.9901 -2.1546 3.9270 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1299 -0.7209 -1.2496 33 1 1.6766 -1.7490 -1.2493 34 1 1.6670 -0.1929 -5.6868 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2494 37 1 1.1851 0.8644 2.3729 38 1 3.5289 0.8906 5.3156 39 1 5.9307 0.5125 5.8281 40 1 3.4526 -2.9217 3.3896 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344985791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:34 Heat of formation + Delta-G solvation = -11.701313 kcal Electronic energy + Delta-G solvation = -24779.972866 eV Core-core repulsion = 21108.157642 eV Total energy + Delta-G solvation = -3671.815224 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94673 -38.00169 -37.43893 -37.11740 -36.11082 -33.75949 -33.44749 -32.42162 -32.01921 -27.79934 -26.59648 -26.08922 -25.83975 -24.50116 -22.42463 -20.28631 -19.87865 -18.62977 -18.24190 -17.51227 -17.32427 -16.91090 -15.94609 -15.51383 -15.32189 -14.84045 -14.66461 -14.35946 -14.16238 -13.97393 -13.78825 -13.49635 -13.39107 -13.33634 -12.87200 -12.71223 -12.47594 -12.35316 -12.25629 -12.07609 -11.73639 -11.37313 -11.18148 -11.04059 -10.85733 -10.66290 -10.61460 -10.35778 -10.10524 -10.04952 -9.82997 -9.60631 -9.46703 -9.04298 -8.57606 -6.08000 -4.05663 -0.51339 0.12511 0.48525 1.92939 2.05560 2.75189 2.86444 3.15820 3.27861 3.36404 3.37624 3.46535 3.79533 3.95762 4.18674 4.28078 4.41265 4.55523 4.91810 4.98716 5.02079 5.17271 5.23112 5.35288 5.50865 5.61576 5.70066 5.91998 6.02301 6.12897 6.26056 6.51222 6.56917 6.72793 6.83420 6.89962 6.96767 6.97656 7.02350 7.13113 7.29691 7.73763 8.48677 8.96415 9.54323 11.04754 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.003742 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.966755 B = 7480.682717 C = 8892.418825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 C -0.130 4.130 4 C -0.005 4.005 5 C -0.512 4.512 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.117 3.883 14 N -1.105 6.105 15 S 2.698 3.302 16 O -0.956 6.956 17 O -0.945 6.945 18 C -0.714 4.714 19 C 0.034 3.966 20 C -0.142 4.142 21 C 0.245 3.755 22 C 0.259 3.741 23 N -0.370 5.370 24 N -0.462 5.462 25 C 0.210 3.790 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.018 0.982 33 H 0.016 0.984 34 H 0.263 0.737 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.421 0.579 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 0.827 20.634 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.057 4.057 3 C -0.188 4.188 4 C -0.043 4.043 5 C -0.550 4.550 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.009 4.009 14 N -0.868 5.868 15 S 2.783 3.217 16 O -0.946 6.946 17 O -0.935 6.935 18 C -0.800 4.800 19 C 0.007 3.993 20 C -0.166 4.166 21 C 0.107 3.893 22 C -0.059 4.059 23 N -0.046 5.046 24 N -0.172 5.172 25 C 0.050 3.950 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.259 0.741 38 H 0.184 0.816 39 H 0.175 0.825 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.340 -0.687 21.070 21.747 hybrid contribution 0.487 0.367 -0.327 0.692 sum 5.827 -0.320 20.743 21.548 Atomic orbital electron populations 1.21785 0.94485 1.01547 1.01027 1.20595 0.96140 0.95739 0.93177 1.21786 1.00288 0.95677 1.01014 1.19639 0.96214 0.95664 0.92751 1.21072 1.31896 1.13435 0.88578 0.90344 1.25007 0.95708 0.96721 0.96005 1.69901 1.45824 1.40565 0.97916 0.86868 0.81280 0.83994 0.77633 1.20287 1.21564 1.19068 1.21711 0.98092 0.96614 0.84453 1.55458 1.77922 1.30931 1.22530 1.01996 0.72993 0.74011 0.72688 1.93602 1.77199 1.63548 1.60263 1.93627 1.74769 1.39512 1.85556 1.32542 1.29929 1.03998 1.13565 1.21401 0.92858 0.96943 0.88115 1.22147 0.95970 0.97336 1.01105 1.16675 0.86995 0.91385 0.94289 1.24932 0.91848 0.94315 0.94765 1.81288 1.11034 1.05980 1.06329 1.67738 1.08379 1.29772 1.11348 1.22722 0.88556 0.93626 0.90119 0.94593 0.90944 0.93184 0.93432 0.90764 0.94763 0.96404 0.96605 0.92765 0.90096 0.92048 0.74109 0.81632 0.82452 0.79532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 2 C -0.05 -0.88 0.55 -154.51 -0.08 -0.97 16 3 C -0.13 -1.97 8.05 37.16 0.30 -1.68 16 4 C 0.00 -0.10 3.11 -27.88 -0.09 -0.18 16 5 C -0.51 -13.01 8.20 -34.44 -0.28 -13.30 16 6 H 0.08 2.12 5.92 -52.48 -0.31 1.81 16 7 C 0.07 1.82 5.47 -17.82 -0.10 1.72 16 8 N -0.90 -26.48 13.96 55.43 0.77 -25.70 16 9 Si 0.87 20.61 27.47 -169.99 -4.67 15.94 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 13 C 0.12 1.46 5.11 -4.04 -0.02 1.44 16 14 N -1.10 -11.14 5.33 -10.61 -0.06 -11.20 16 15 S 2.70 26.73 5.75 -107.50 -0.62 26.11 16 16 O -0.96 -11.01 17.35 -57.17 -0.99 -12.00 16 17 O -0.94 -11.97 16.77 -57.17 -0.96 -12.93 16 18 C -0.71 -5.98 5.97 -39.33 -0.23 -6.22 16 19 C 0.03 0.22 9.64 -39.32 -0.38 -0.16 16 20 C -0.14 -0.87 9.80 -39.03 -0.38 -1.25 16 21 C 0.24 2.14 6.58 -85.07 -0.56 1.58 16 22 C 0.26 2.53 15.53 -22.47 -0.35 2.18 16 23 N -0.37 -4.28 18.54 41.84 0.78 -3.50 16 24 N -0.46 -4.71 10.28 -11.16 -0.11 -4.83 16 25 C 0.21 1.93 10.68 -17.57 -0.19 1.74 16 26 H 0.04 0.47 7.20 -51.93 -0.37 0.10 16 27 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 31 H 0.03 0.40 6.60 -51.93 -0.34 0.06 16 32 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 33 H 0.02 0.33 7.57 -51.93 -0.39 -0.06 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.08 1.00 7.75 -51.93 -0.40 0.60 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.42 3.79 6.47 -34.47 -0.22 3.57 16 38 H 0.17 0.69 7.70 -52.49 -0.40 0.29 16 39 H 0.16 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.19 1.44 7.62 -52.49 -0.40 1.04 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -33.18 350.99 -7.41 -40.59 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.77 Total: -0.87 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.07 Total: -16.90 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 1.38 Total: -45.23 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -1.95 Total: -24.92 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Atomic # 16 Polarization: 26.73 SS G_CDS: -0.62 Total: 26.11 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.18 -7.41 -40.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344985791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.888 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds