Wall clock time and date at job start Tue Mar 31 2020 13:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 S 1.65599 * 120.00012 * 165.00017 * 14 13 2 16 16 O 1.42097 * 106.40866 * 178.54114 * 15 14 13 17 17 O 1.42102 * 106.40573 * 311.46330 * 15 14 13 18 18 C 1.76207 * 107.21714 * 65.00092 * 15 14 13 19 19 C 1.38698 * 120.30478 * 90.00047 * 18 15 14 20 20 C 1.38495 * 118.50409 * 180.02562 * 19 18 15 21 21 C 1.39462 * 119.05105 * 0.02562 * 20 19 18 22 22 C 1.43195 * 119.73727 * 179.97438 * 21 20 19 23 23 N 8.95360 * 140.54838 * 108.83500 * 2 1 3 24 24 N 1.32790 * 120.52419 * 0.02562 * 21 20 19 25 25 C 1.31593 * 121.62161 * 359.66625 * 24 21 20 26 26 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 27 27 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 28 28 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 31 31 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 32 32 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 34 34 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 36 36 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 37 37 H 0.97001 * 120.00191 * 345.00817 * 14 13 2 38 38 H 1.07997 * 120.75275 * 0.02562 * 19 18 15 39 39 H 1.07996 * 120.47561 * 180.02562 * 20 19 18 40 40 H 1.07995 * 119.54540 * 180.30632 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 16 1.6258 -0.7782 3.9212 16 8 1.1157 0.1508 4.8677 17 8 1.0840 -2.0793 3.7397 18 6 3.3303 -0.9988 4.3093 19 6 4.0226 -0.0180 5.0038 20 6 5.3613 -0.2298 5.2886 21 6 5.9635 -1.4156 4.8688 22 6 7.3470 -1.6496 5.1548 23 7 8.4436 -1.8368 5.3847 24 7 5.2645 -2.3289 4.2050 25 6 3.9901 -2.1546 3.9270 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1299 -0.7209 -1.2496 33 1 1.6766 -1.7490 -1.2493 34 1 1.6670 -0.1929 -5.6868 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2494 37 1 1.1851 0.8644 2.3729 38 1 3.5289 0.8906 5.3156 39 1 5.9307 0.5125 5.8281 40 1 3.4526 -2.9217 3.3896 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344985791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:33 Heat of formation + Delta-G solvation = -36.250957 kcal Electronic energy + Delta-G solvation = -24781.037418 eV Core-core repulsion = 21108.157642 eV Total energy + Delta-G solvation = -3672.879777 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55435 -39.20706 -38.32143 -37.89327 -36.97388 -35.16319 -34.05653 -33.70926 -33.02762 -29.54252 -27.87001 -27.18199 -26.51380 -25.08322 -24.14957 -20.98320 -20.58760 -19.82256 -19.06024 -18.82195 -18.27667 -18.10266 -16.89210 -16.18830 -16.09035 -15.99387 -15.72585 -15.48254 -15.24642 -15.20459 -14.57698 -14.30672 -14.27075 -14.14854 -14.08769 -14.06492 -13.94846 -13.26117 -13.21607 -13.12704 -12.92298 -12.68380 -12.58213 -12.40081 -12.20402 -12.07042 -11.68261 -11.48328 -11.42207 -11.05800 -10.98546 -10.83340 -10.68269 -10.64819 -10.35621 -8.16941 -6.16745 -1.14507 -0.65137 -0.04863 1.20219 1.36826 1.41325 1.43490 1.52445 1.98893 2.19113 2.44016 2.49417 2.73271 3.14255 3.19525 3.37424 3.67820 3.71846 3.90213 3.95539 4.18770 4.26652 4.43105 4.48429 4.55605 4.67407 4.78804 4.83990 4.95381 5.07534 5.17241 5.19521 5.21909 5.43225 5.52132 5.52704 5.66433 5.80221 5.86514 6.01604 6.12933 6.35567 6.45508 6.91902 7.45977 8.99060 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.003742 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.966755 B = 7480.682717 C = 8892.418825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 C -0.128 4.128 4 C -0.008 4.008 5 C -0.500 4.500 6 H 0.048 0.952 7 C 0.001 3.999 8 N -0.957 5.957 9 Si 0.935 3.065 10 H -0.273 1.273 11 H -0.295 1.295 12 H -0.242 1.242 13 C 0.123 3.877 14 N -1.100 6.100 15 S 2.722 3.278 16 O -0.969 6.969 17 O -0.974 6.974 18 C -0.712 4.712 19 C 0.038 3.962 20 C -0.122 4.122 21 C 0.228 3.772 22 C 0.280 3.720 23 N -0.409 5.409 24 N -0.488 5.488 25 C 0.200 3.800 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.428 0.572 38 H 0.195 0.805 39 H 0.194 0.806 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 0.914 23.375 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.056 4.056 3 C -0.185 4.185 4 C -0.046 4.046 5 C -0.538 4.538 6 H 0.066 0.934 7 C -0.195 4.195 8 N -0.599 5.599 9 Si 0.760 3.240 10 H -0.198 1.198 11 H -0.222 1.222 12 H -0.165 1.165 13 C -0.003 4.003 14 N -0.864 5.864 15 S 2.810 3.190 16 O -0.959 6.959 17 O -0.964 6.964 18 C -0.800 4.800 19 C 0.011 3.989 20 C -0.145 4.145 21 C 0.091 3.909 22 C -0.038 4.038 23 N -0.086 5.086 24 N -0.199 5.199 25 C 0.039 3.961 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.267 0.733 38 H 0.212 0.788 39 H 0.211 0.789 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 6.235 -0.593 23.838 24.647 hybrid contribution 0.135 0.431 -1.113 1.202 sum 6.370 -0.162 22.724 23.601 Atomic orbital electron populations 1.21758 0.94812 1.01321 1.00895 1.20490 0.95925 0.96195 0.93040 1.21735 1.00640 0.95061 1.01054 1.19642 0.96382 0.95683 0.92919 1.21452 1.29861 1.12131 0.90379 0.93433 1.25891 0.97646 1.00028 0.95916 1.70066 1.48450 1.42921 0.98452 0.85891 0.79870 0.80226 0.78039 1.19848 1.22199 1.16489 1.21509 0.99235 0.96300 0.83274 1.55277 1.78195 1.31080 1.21885 1.01072 0.73063 0.72898 0.72011 1.93587 1.77981 1.63861 1.60447 1.93593 1.76063 1.40910 1.85823 1.32267 1.28718 1.04567 1.14477 1.21843 0.92914 0.97280 0.86820 1.22503 0.95842 0.96602 0.99521 1.16816 0.86415 0.92445 0.95244 1.25095 0.91889 0.93182 0.93607 1.81307 1.12194 1.07224 1.07836 1.67664 1.08967 1.30848 1.12375 1.22861 0.88374 0.94260 0.90646 0.91431 0.94370 0.93453 0.92808 0.94487 0.91012 0.95842 0.96334 0.93092 0.89767 0.90050 0.73345 0.78756 0.78921 0.78929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 8.05 71.98 0.58 -3.49 16 2 C -0.05 -1.67 0.55 -52.18 -0.03 -1.70 16 3 C -0.13 -3.64 8.05 71.98 0.58 -3.06 16 4 C -0.01 -0.33 3.11 29.85 0.09 -0.24 16 5 C -0.50 -25.92 8.20 25.60 0.21 -25.71 16 6 H 0.05 2.70 5.92 -2.91 -0.02 2.69 16 7 C 0.00 0.04 5.47 84.65 0.46 0.50 16 8 N -0.96 -58.20 13.96 21.45 0.30 -57.90 16 9 Si 0.93 42.44 27.47 68.60 1.88 44.33 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 13 C 0.12 2.68 5.11 86.38 0.44 3.12 16 14 N -1.10 -18.37 5.33 -187.49 -1.00 -19.37 16 15 S 2.72 45.58 5.75 -56.49 -0.32 45.25 16 16 O -0.97 -19.03 17.35 -128.00 -2.22 -21.25 16 17 O -0.97 -22.50 16.77 -128.00 -2.15 -24.64 16 18 C -0.71 -9.54 5.97 22.43 0.13 -9.41 16 19 C 0.04 0.33 9.64 22.44 0.22 0.55 16 20 C -0.12 -0.99 9.80 22.63 0.22 -0.77 16 21 C 0.23 3.39 6.58 40.54 0.27 3.66 16 22 C 0.28 4.99 15.53 88.33 1.37 6.37 16 23 N -0.41 -9.05 18.54 19.00 0.35 -8.70 16 24 N -0.49 -8.96 10.28 -189.22 -1.94 -10.91 16 25 C 0.20 3.17 10.68 84.78 0.91 4.08 16 26 H 0.07 1.64 7.20 -2.39 -0.02 1.62 16 27 H 0.04 1.43 6.62 -2.39 -0.02 1.41 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 1.32 6.62 -2.38 -0.02 1.31 16 31 H 0.07 1.48 6.60 -2.39 -0.02 1.46 16 32 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 33 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 34 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.08 1.83 7.75 -2.39 -0.02 1.81 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.43 6.02 6.47 -96.75 -0.63 5.39 16 38 H 0.20 0.57 7.70 -2.91 -0.02 0.55 16 39 H 0.19 0.15 8.06 -2.91 -0.02 0.13 16 40 H 0.19 2.62 7.62 -2.91 -0.02 2.60 16 Total: -1.00 -74.41 350.99 0.76 -73.65 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 0.41 Total: 5.65 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 5.45 Total: -26.10 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -2.29 Total: -96.88 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -4.37 Total: -45.90 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.33 kcal Atomic # 16 Polarization: 45.58 SS G_CDS: -0.32 Total: 45.25 kcal Total: -74.41 0.76 -73.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344985791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.396 kcal (2) G-P(sol) polarization free energy of solvation -74.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds