Wall clock time and date at job start Tue Mar 31 2020 13:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 C 1.53000 * 109.47379 * 239.99612 * 2 1 3 5 5 C 1.50700 * 109.47003 * 59.99944 * 4 2 1 6 6 H 1.08004 * 119.99740 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99967 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00322 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99994 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47018 * 59.99648 * 9 7 5 11 11 H 1.48499 * 109.47194 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46855 * 299.99747 * 9 7 5 13 13 C 1.53004 * 109.47007 * 119.99624 * 2 1 3 14 14 N 1.46495 * 109.47316 * 300.00197 * 13 2 1 15 15 S 1.65596 * 120.00096 * 165.00031 * 14 13 2 16 16 O 1.42096 * 106.40359 * 311.45907 * 15 14 13 17 17 O 1.42101 * 106.40192 * 178.54033 * 15 14 13 18 18 C 1.76201 * 107.21784 * 64.99962 * 15 14 13 19 19 C 1.38535 * 120.47130 * 114.99826 * 18 15 14 20 20 C 1.38659 * 118.50573 * 180.02562 * 19 18 15 21 21 C 1.38506 * 119.38052 * 359.97438 * 20 19 18 22 22 N 1.31560 * 120.91404 * 359.97438 * 21 20 19 23 23 C 1.32824 * 121.61841 * 0.02562 * 22 21 20 24 24 C 1.43205 * 119.73399 * 179.72447 * 23 22 21 25 25 N 3.76892 * 114.78131 * 153.59457 * 2 1 3 26 26 H 1.08993 * 109.47435 * 300.00131 * 1 2 3 27 27 H 1.08996 * 109.46750 * 60.00824 * 1 2 3 28 28 H 1.09001 * 109.46730 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47092 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46394 * 299.99668 * 3 2 1 31 31 H 1.08993 * 109.47043 * 59.99628 * 3 2 1 32 32 H 1.08997 * 109.47436 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.47034 * 300.00241 * 4 2 1 34 34 H 0.96994 * 120.00547 * 179.97438 * 8 7 5 35 35 H 1.09007 * 109.47174 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47385 * 60.00389 * 13 2 1 37 37 H 0.96996 * 119.99926 * 344.99957 * 14 13 2 38 38 H 1.07995 * 120.74981 * 0.04385 * 19 18 15 39 39 H 1.07998 * 120.31181 * 179.97438 * 20 19 18 40 40 H 1.07999 * 119.54399 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8704 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8526 9 14 1.2484 0.3985 -5.2572 10 1 1.7443 1.7982 -5.2573 11 1 1.7433 -0.3017 -6.4697 12 1 -0.2367 0.3995 -5.2571 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 16 1.6256 -0.7780 3.9213 16 8 1.0838 -2.0790 3.7398 17 8 1.1154 0.1512 4.8676 18 6 3.3301 -0.9985 4.3094 19 6 3.8957 -0.3396 5.3889 20 6 5.2409 -0.5423 5.6570 21 6 5.9752 -1.3911 4.8454 22 7 5.4137 -2.0057 3.8267 23 6 4.1285 -1.8392 3.5354 24 6 3.5601 -2.5237 2.4133 25 7 3.1098 -3.0649 1.5218 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 3.1300 -0.7217 -1.2490 33 1 1.6767 -1.7490 -1.2491 34 1 2.8603 -1.8836 -4.7335 35 1 3.1301 -0.7216 1.2491 36 1 1.6767 -1.7489 1.2494 37 1 1.1850 0.8645 2.3729 38 1 3.3022 0.3169 6.0078 39 1 5.7118 -0.0431 6.4909 40 1 7.0233 -1.5506 5.0515 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345002813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:38 Heat of formation + Delta-G solvation = 7.228492 kcal Electronic energy + Delta-G solvation = -25689.953827 eV Core-core repulsion = 22018.959461 eV Total energy + Delta-G solvation = -3670.994366 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84093 -38.24313 -37.34669 -36.56246 -36.03142 -33.63563 -33.33170 -32.30018 -31.91887 -27.03737 -26.50223 -25.97452 -25.46765 -24.65520 -22.77804 -20.20311 -19.67533 -18.73019 -18.06841 -17.28069 -17.10561 -16.45747 -16.01438 -15.84174 -15.01106 -14.69183 -14.55565 -14.32314 -14.27711 -13.76682 -13.59168 -13.11691 -13.08246 -13.07226 -12.57294 -12.28644 -12.25225 -12.17204 -12.06239 -11.97620 -11.66099 -11.24837 -10.98824 -10.84696 -10.80210 -10.62219 -10.35945 -10.26371 -10.19718 -9.93431 -9.86005 -9.39586 -9.18029 -8.90357 -8.33318 -5.97008 -3.98777 -0.24440 0.18311 0.43817 2.24903 2.47332 2.80387 3.05125 3.30347 3.33549 3.38900 3.40216 3.52260 3.92834 4.17509 4.26404 4.46607 4.55004 4.66573 4.75503 5.14493 5.16468 5.37226 5.38053 5.46095 5.67011 5.75891 5.82523 6.02818 6.17196 6.27238 6.35037 6.62815 6.66009 6.97506 7.02932 7.04996 7.10120 7.13500 7.20633 7.66266 7.78880 8.01174 8.42554 9.05697 9.64097 11.14201 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018864 B = 0.003864 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.948635 B = 7244.012304 C = 7880.629925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.129 4.129 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.107 3.893 14 N -1.103 6.103 15 S 2.690 3.310 16 O -0.939 6.939 17 O -0.955 6.955 18 C -0.693 4.693 19 C 0.025 3.975 20 C -0.171 4.171 21 C 0.156 3.844 22 N -0.461 5.461 23 C 0.312 3.688 24 C 0.201 3.799 25 N -0.297 5.297 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.016 0.984 33 H 0.022 0.978 34 H 0.260 0.740 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.421 0.579 38 H 0.166 0.834 39 H 0.156 0.844 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.553 4.607 21.831 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.066 4.066 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.018 4.018 14 N -0.867 5.867 15 S 2.775 3.225 16 O -0.929 6.929 17 O -0.945 6.945 18 C -0.781 4.781 19 C -0.002 4.002 20 C -0.193 4.193 21 C -0.002 4.002 22 N -0.172 5.172 23 C 0.171 3.829 24 C -0.117 4.117 25 N 0.026 4.974 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.259 0.741 38 H 0.183 0.817 39 H 0.173 0.827 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.882 2.645 20.357 21.101 hybrid contribution 0.295 1.581 -0.199 1.621 sum 5.177 4.226 20.158 21.237 Atomic orbital electron populations 1.21761 0.94877 1.01467 1.00485 1.20835 0.95869 0.95629 0.94256 1.21781 1.00365 0.95954 1.00522 1.19095 0.96129 0.95474 0.89364 1.21140 1.31350 1.12107 0.90501 0.92274 1.25006 0.95304 0.95057 0.99025 1.69959 1.36815 1.22928 1.23511 0.86717 0.79191 0.79705 0.82703 1.20377 1.21415 1.20300 1.22487 0.97384 0.97204 0.84736 1.55488 1.77854 1.30874 1.22496 1.02228 0.73202 0.74285 0.72834 1.93660 1.74579 1.39296 1.85351 1.93584 1.77129 1.63440 1.60372 1.32188 1.29105 1.09623 1.07171 1.21437 0.95238 0.91929 0.91553 1.22530 0.94882 1.00066 1.01785 1.23222 1.00660 0.88783 0.87487 1.67734 1.09583 1.22260 1.17607 1.15721 0.89373 0.89758 0.88085 1.24835 0.96417 0.96705 0.93707 1.81369 1.04520 1.04280 1.07227 0.94830 0.91346 0.93187 0.93454 0.91161 0.94971 0.96614 0.95992 0.93001 0.92611 0.89235 0.74123 0.81657 0.82665 0.80574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.05 37.16 0.30 -2.08 16 2 C -0.06 -1.25 0.55 -154.51 -0.08 -1.33 16 3 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 4 C 0.04 0.93 4.04 -27.88 -0.11 0.82 16 5 C -0.51 -13.79 7.65 -34.44 -0.26 -14.05 16 6 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.11 1.85 2.87 -4.04 -0.01 1.83 16 14 N -1.10 -15.13 5.33 -10.61 -0.06 -15.19 16 15 S 2.69 35.53 5.44 -107.50 -0.59 34.95 16 16 O -0.94 -15.51 16.25 -57.17 -0.93 -16.44 16 17 O -0.96 -12.84 17.05 -57.17 -0.97 -13.82 16 18 C -0.69 -7.82 5.94 -39.04 -0.23 -8.05 16 19 C 0.02 0.19 9.66 -39.32 -0.38 -0.19 16 20 C -0.17 -0.95 10.11 -39.33 -0.40 -1.34 16 21 C 0.16 1.10 11.18 -17.57 -0.20 0.90 16 22 N -0.46 -5.32 10.28 -11.16 -0.11 -5.44 16 23 C 0.31 4.09 6.53 -85.07 -0.56 3.53 16 24 C 0.20 3.25 10.02 -22.47 -0.23 3.03 16 25 N -0.30 -5.57 15.60 41.84 0.65 -4.92 16 26 H 0.03 0.51 7.19 -51.93 -0.37 0.14 16 27 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 31 H 0.03 0.44 6.60 -51.93 -0.34 0.10 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.06 0.94 6.22 -51.92 -0.32 0.62 16 36 H 0.09 1.70 5.29 -51.93 -0.27 1.43 16 37 H 0.42 4.97 6.47 -34.47 -0.22 4.75 16 38 H 0.17 0.93 7.44 -52.49 -0.39 0.54 16 39 H 0.16 0.25 8.06 -52.49 -0.42 -0.17 16 40 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -34.96 339.33 -7.72 -42.68 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.58 Total: -0.01 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -1.96 Total: -17.35 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 1.22 Total: -51.53 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -1.90 Total: -30.26 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 35.53 SS G_CDS: -0.59 Total: 34.95 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.96 -7.72 -42.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345002813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.906 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds