Wall clock time and date at job start Tue Mar 31 2020 13:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 C 1.53000 * 109.47379 * 239.99612 * 2 1 3 5 5 C 1.50700 * 109.47003 * 59.99944 * 4 2 1 6 6 H 1.08004 * 119.99740 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99967 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00322 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99994 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47018 * 59.99648 * 9 7 5 11 11 H 1.48499 * 109.47194 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46855 * 299.99747 * 9 7 5 13 13 C 1.53004 * 109.47007 * 119.99624 * 2 1 3 14 14 N 1.46495 * 109.47316 * 300.00197 * 13 2 1 15 15 S 1.65596 * 120.00096 * 165.00031 * 14 13 2 16 16 O 1.42096 * 106.40359 * 311.45907 * 15 14 13 17 17 O 1.42101 * 106.40192 * 178.54033 * 15 14 13 18 18 C 1.76201 * 107.21784 * 64.99962 * 15 14 13 19 19 C 1.38535 * 120.47130 * 114.99826 * 18 15 14 20 20 C 1.38659 * 118.50573 * 180.02562 * 19 18 15 21 21 C 1.38506 * 119.38052 * 359.97438 * 20 19 18 22 22 N 1.31560 * 120.91404 * 359.97438 * 21 20 19 23 23 C 1.32824 * 121.61841 * 0.02562 * 22 21 20 24 24 C 1.43205 * 119.73399 * 179.72447 * 23 22 21 25 25 N 3.76892 * 114.78131 * 153.59457 * 2 1 3 26 26 H 1.08993 * 109.47435 * 300.00131 * 1 2 3 27 27 H 1.08996 * 109.46750 * 60.00824 * 1 2 3 28 28 H 1.09001 * 109.46730 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47092 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46394 * 299.99668 * 3 2 1 31 31 H 1.08993 * 109.47043 * 59.99628 * 3 2 1 32 32 H 1.08997 * 109.47436 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.47034 * 300.00241 * 4 2 1 34 34 H 0.96994 * 120.00547 * 179.97438 * 8 7 5 35 35 H 1.09007 * 109.47174 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47385 * 60.00389 * 13 2 1 37 37 H 0.96996 * 119.99926 * 344.99957 * 14 13 2 38 38 H 1.07995 * 120.74981 * 0.04385 * 19 18 15 39 39 H 1.07998 * 120.31181 * 179.97438 * 20 19 18 40 40 H 1.07999 * 119.54399 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8704 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8526 9 14 1.2484 0.3985 -5.2572 10 1 1.7443 1.7982 -5.2573 11 1 1.7433 -0.3017 -6.4697 12 1 -0.2367 0.3995 -5.2571 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 16 1.6256 -0.7780 3.9213 16 8 1.0838 -2.0790 3.7398 17 8 1.1154 0.1512 4.8676 18 6 3.3301 -0.9985 4.3094 19 6 3.8957 -0.3396 5.3889 20 6 5.2409 -0.5423 5.6570 21 6 5.9752 -1.3911 4.8454 22 7 5.4137 -2.0057 3.8267 23 6 4.1285 -1.8392 3.5354 24 6 3.5601 -2.5237 2.4133 25 7 3.1098 -3.0649 1.5218 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 3.1300 -0.7217 -1.2490 33 1 1.6767 -1.7490 -1.2491 34 1 2.8603 -1.8836 -4.7335 35 1 3.1301 -0.7216 1.2491 36 1 1.6767 -1.7489 1.2494 37 1 1.1850 0.8645 2.3729 38 1 3.3022 0.3169 6.0078 39 1 5.7118 -0.0431 6.4909 40 1 7.0233 -1.5506 5.0515 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345002813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:37 Heat of formation + Delta-G solvation = -20.101880 kcal Electronic energy + Delta-G solvation = -25691.138961 eV Core-core repulsion = 22018.959461 eV Total energy + Delta-G solvation = -3672.179500 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.58448 -39.63693 -38.55839 -37.84530 -37.16546 -35.31270 -34.03625 -33.77354 -33.03573 -29.03491 -27.98600 -27.42997 -26.27969 -25.34811 -24.75165 -21.13564 -20.69136 -20.14765 -19.15563 -18.41841 -18.33152 -17.95274 -17.26998 -16.59026 -16.52394 -16.05715 -15.84751 -15.62619 -15.30717 -15.02719 -14.69700 -14.45510 -14.33727 -14.11638 -14.00609 -13.90413 -13.65948 -13.40569 -13.32349 -13.27643 -12.92491 -12.72572 -12.65571 -12.50707 -12.33842 -12.18306 -11.95015 -11.61788 -11.54002 -11.02385 -10.99796 -10.85885 -10.59390 -10.54889 -10.51847 -8.14311 -6.23194 -1.07223 -0.82083 -0.21423 1.08845 1.40412 1.43234 1.50371 1.55252 1.71618 2.07668 2.34479 2.43064 2.59657 3.02259 3.19406 3.52136 3.62930 3.75738 3.77794 3.97157 4.02098 4.17626 4.24168 4.33464 4.58483 4.66097 4.69702 4.75575 4.85717 4.94061 5.10133 5.12076 5.33560 5.42160 5.46918 5.50264 5.55103 5.77612 5.88462 5.95101 5.96330 6.29506 6.42973 6.91799 7.44610 8.97902 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018864 B = 0.003864 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.948635 B = 7244.012304 C = 7880.629925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.064 4.064 3 C -0.124 4.124 4 C 0.046 3.954 5 C -0.517 4.517 6 H 0.073 0.927 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.960 3.040 10 H -0.264 1.264 11 H -0.291 1.291 12 H -0.268 1.268 13 C 0.121 3.879 14 N -1.098 6.098 15 S 2.704 3.296 16 O -0.980 6.980 17 O -0.953 6.953 18 C -0.691 4.691 19 C 0.019 3.981 20 C -0.135 4.135 21 C 0.153 3.847 22 N -0.488 5.488 23 C 0.276 3.724 24 C 0.222 3.778 25 N -0.368 5.368 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.075 0.925 32 H -0.016 1.016 33 H -0.020 1.020 34 H 0.259 0.741 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.431 0.569 38 H 0.193 0.807 39 H 0.210 0.790 40 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.463 7.842 24.901 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.066 4.066 3 C -0.181 4.181 4 C 0.008 3.992 5 C -0.555 4.555 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.785 3.215 10 H -0.189 1.189 11 H -0.216 1.216 12 H -0.193 1.193 13 C -0.005 4.005 14 N -0.862 5.862 15 S 2.792 3.208 16 O -0.970 6.970 17 O -0.943 6.943 18 C -0.783 4.783 19 C -0.006 4.006 20 C -0.156 4.156 21 C -0.004 4.004 22 N -0.199 5.199 23 C 0.136 3.864 24 C -0.095 4.095 25 N -0.045 5.045 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.002 0.998 33 H -0.002 1.002 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.271 0.729 38 H 0.210 0.790 39 H 0.227 0.773 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.737 5.916 23.430 24.837 hybrid contribution 0.176 0.591 -0.928 1.114 sum 5.913 6.507 22.503 24.160 Atomic orbital electron populations 1.21728 0.94012 1.00751 1.01831 1.20703 0.96573 0.96694 0.92620 1.21722 1.00187 0.94201 1.02001 1.18907 0.94006 0.93924 0.92359 1.21578 1.30638 1.12181 0.91107 0.90867 1.25968 0.95596 0.95817 1.02755 1.70136 1.38714 1.24950 1.24110 0.85583 0.78887 0.78842 0.78219 1.18851 1.21639 1.19303 1.22039 0.97192 0.96138 0.85127 1.55279 1.78194 1.31047 1.21703 1.01515 0.73801 0.73217 0.72257 1.93620 1.76449 1.41208 1.85707 1.93581 1.77826 1.63140 1.59764 1.31748 1.27159 1.10684 1.08694 1.21948 0.96747 0.91590 0.90364 1.23147 0.93419 0.97490 1.01516 1.24094 1.02532 0.87773 0.85955 1.67702 1.08753 1.23681 1.19755 1.15633 0.90696 0.91724 0.88360 1.25599 0.94978 0.95424 0.93522 1.81378 1.06619 1.06904 1.09584 0.90997 0.92336 0.95010 0.93813 0.92486 0.90594 0.99757 1.00167 0.93211 0.92720 0.91396 0.72946 0.78955 0.77275 0.76399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.05 71.98 0.58 -4.12 16 2 C -0.06 -2.57 0.55 -52.18 -0.03 -2.60 16 3 C -0.12 -4.18 8.05 71.98 0.58 -3.60 16 4 C 0.05 2.44 4.04 29.85 0.12 2.56 16 5 C -0.52 -28.67 7.65 25.60 0.20 -28.48 16 6 H 0.07 3.78 5.68 -2.91 -0.02 3.76 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 8 N -0.94 -58.86 13.29 21.45 0.28 -58.58 16 9 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 10 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 C 0.12 4.37 2.87 86.38 0.25 4.61 16 14 N -1.10 -29.39 5.33 -187.48 -1.00 -30.39 16 15 S 2.70 69.38 5.44 -56.49 -0.31 69.07 16 16 O -0.98 -33.45 16.25 -128.00 -2.08 -35.53 16 17 O -0.95 -23.37 17.05 -128.00 -2.18 -25.55 16 18 C -0.69 -14.45 5.94 22.62 0.13 -14.32 16 19 C 0.02 0.22 9.66 22.44 0.22 0.43 16 20 C -0.14 -0.70 10.11 22.43 0.23 -0.48 16 21 C 0.15 1.51 11.18 84.80 0.95 2.45 16 22 N -0.49 -10.56 10.28 -189.21 -1.94 -12.50 16 23 C 0.28 7.21 6.53 40.52 0.26 7.48 16 24 C 0.22 7.70 10.02 88.33 0.89 8.59 16 25 N -0.37 -15.20 15.60 19.00 0.30 -14.91 16 26 H 0.07 2.09 7.19 -2.39 -0.02 2.07 16 27 H 0.06 2.27 6.62 -2.39 -0.02 2.26 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 2.07 6.62 -2.39 -0.02 2.06 16 31 H 0.08 1.88 6.60 -2.39 -0.02 1.86 16 32 H -0.02 -0.94 8.14 -2.39 -0.02 -0.95 16 33 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 34 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.05 1.97 6.22 -2.38 -0.01 1.95 16 36 H 0.07 2.80 5.29 -2.39 -0.01 2.79 16 37 H 0.43 9.22 6.47 -96.75 -0.63 8.60 16 38 H 0.19 1.13 7.44 -2.91 -0.02 1.11 16 39 H 0.21 -1.08 8.06 -2.91 -0.02 -1.10 16 40 H 0.22 0.16 8.06 -2.91 -0.02 0.14 16 Total: -1.00 -83.63 339.33 0.40 -83.23 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 0.47 Total: 5.69 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 4.83 Total: -27.25 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -2.36 Total: -116.37 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: -4.26 Total: -61.09 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 69.38 SS G_CDS: -0.31 Total: 69.07 kcal Total: -83.63 0.40 -83.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345002813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.132 kcal (2) G-P(sol) polarization free energy of solvation -83.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds