Wall clock time and date at job start Tue Mar 31 2020 14:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47279 * 2 1 4 4 N 1.46503 * 109.47261 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99479 * 275.31589 * 4 3 2 6 6 H 1.07989 * 120.00229 * 38.95610 * 5 4 3 7 7 C 1.38819 * 119.99331 * 218.95831 * 5 4 3 8 8 N 1.31617 * 120.00423 * 19.27740 * 7 5 4 9 9 Si 1.86805 * 119.99296 * 199.27678 * 7 5 4 10 10 H 1.48502 * 109.46999 * 60.00127 * 9 7 5 11 11 H 1.48500 * 109.46766 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47259 * 299.99782 * 9 7 5 13 13 C 1.46501 * 120.00371 * 95.31147 * 4 3 2 14 14 C 1.50705 * 109.46868 * 270.00091 * 13 4 3 15 15 C 1.38200 * 119.99708 * 105.00107 * 14 13 4 16 16 C 1.38433 * 119.99964 * 179.97438 * 15 14 13 17 17 F 1.35102 * 119.99810 * 179.97438 * 16 15 14 18 18 C 1.38471 * 119.99893 * 359.97438 * 16 15 14 19 19 C 1.50697 * 119.99974 * 179.97438 * 18 16 15 20 20 F 1.39900 * 109.46928 * 180.02562 * 19 18 16 21 21 F 1.39907 * 109.47146 * 300.00069 * 19 18 16 22 22 F 1.39895 * 109.47006 * 60.00207 * 19 18 16 23 23 C 1.38166 * 119.99923 * 0.02562 * 18 16 15 24 24 C 1.38427 * 120.00051 * 284.71914 * 14 13 4 25 25 F 1.35104 * 119.99949 * 0.03195 * 24 14 13 26 26 H 1.08998 * 109.47337 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47354 * 300.00267 * 1 2 3 28 28 H 1.09000 * 109.47223 * 59.99559 * 1 2 3 29 29 H 1.09006 * 109.47354 * 239.99733 * 2 1 3 30 30 H 1.09004 * 109.47063 * 119.99951 * 2 1 3 31 31 H 1.08994 * 109.47306 * 60.00274 * 3 2 1 32 32 H 1.09004 * 109.47032 * 299.99970 * 3 2 1 33 33 H 0.96997 * 120.00016 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.46814 * 29.99908 * 13 4 3 35 35 H 1.08998 * 109.46902 * 150.00186 * 13 4 3 36 36 H 1.07999 * 120.00266 * 359.95632 * 15 14 13 37 37 H 1.07995 * 119.99620 * 179.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.3324 1.1800 6 1 3.8305 0.6698 1.9532 7 6 5.3468 2.0727 1.3827 8 7 5.5863 3.1350 0.6436 9 14 6.5633 1.5609 2.7048 10 1 7.0597 0.1912 2.4172 11 1 7.7061 2.5091 2.7196 12 1 5.8910 1.5760 4.0288 13 6 4.2370 1.5601 -1.2641 14 6 4.4879 0.1856 -1.8291 15 6 3.7475 -0.2646 -2.9057 16 6 3.9783 -1.5269 -3.4250 17 9 3.2541 -1.9672 -4.4771 18 6 4.9514 -2.3382 -2.8661 19 6 5.2023 -3.7125 -3.4311 20 9 6.2231 -4.3358 -2.7053 21 9 4.0329 -4.4751 -3.3393 22 9 5.5834 -3.6028 -4.7726 23 6 5.6916 -1.8880 -1.7898 24 6 5.4640 -0.6235 -1.2734 25 9 6.1913 -0.1813 -0.2242 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 6.3948 3.6520 0.7850 34 1 3.6477 2.1421 -1.9726 35 1 5.1895 2.0596 -1.0870 36 1 2.9886 0.3682 -3.3416 37 1 6.4503 -2.5209 -1.3537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347074943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:23 Heat of formation + Delta-G solvation = -201.243047 kcal Electronic energy + Delta-G solvation = -28744.252392 eV Core-core repulsion = 23936.228143 eV Total energy + Delta-G solvation = -4808.024248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.16993 -48.91854 -48.15657 -47.62170 -47.57672 -38.85469 -36.30222 -33.22827 -32.40040 -30.61174 -29.88195 -27.43040 -25.70244 -24.60904 -22.91859 -22.41483 -21.03135 -20.24919 -18.60256 -18.48819 -18.47315 -17.18647 -16.75266 -16.69054 -15.71680 -15.59780 -14.97310 -14.83938 -14.55352 -14.44498 -14.41298 -14.09216 -14.02698 -13.99360 -13.77554 -13.75166 -13.66165 -13.26977 -13.07453 -12.58360 -12.38726 -12.22120 -11.77338 -11.65226 -11.48323 -11.15970 -11.00986 -10.76121 -10.65035 -10.55975 -10.24486 -10.16063 -9.91081 -8.97119 -8.62077 -8.26321 -6.79766 -5.99992 -3.56004 0.88796 1.19810 2.64855 3.29562 3.36023 3.41065 3.43797 3.67435 3.95557 4.20669 4.36829 4.43350 4.69905 4.84071 5.10485 5.25052 5.29245 5.36838 5.57736 5.64142 5.68018 5.88275 5.95522 6.03528 6.15894 6.20346 6.30377 6.36592 6.49974 6.51095 6.70202 6.84328 6.98681 7.05116 7.30206 7.66538 8.31918 8.95982 9.57836 10.13892 11.00570 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.005287 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.014445 B = 5294.244435 C = 6431.129400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.569 5.569 5 C -0.259 4.259 6 H 0.061 0.939 7 C 0.028 3.972 8 N -0.878 5.878 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.281 1.281 13 C 0.168 3.832 14 C -0.054 4.054 15 C -0.136 4.136 16 C 0.130 3.870 17 F -0.132 7.132 18 C -0.224 4.224 19 C 0.518 3.482 20 F -0.176 7.176 21 F -0.175 7.175 22 F -0.176 7.176 23 C -0.094 4.094 24 C 0.113 3.887 25 F -0.105 7.105 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.037 0.963 33 H 0.260 0.740 34 H 0.048 0.952 35 H 0.114 0.886 36 H 0.146 0.854 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.625 -8.187 -7.478 11.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.022 3.978 4 N -0.286 5.286 5 C -0.387 4.387 6 H 0.079 0.921 7 C -0.174 4.174 8 N -0.518 5.518 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.207 1.207 13 C 0.041 3.959 14 C -0.060 4.060 15 C -0.156 4.156 16 C 0.111 3.889 17 F -0.110 7.110 18 C -0.227 4.227 19 C 0.464 3.536 20 F -0.157 7.157 21 F -0.157 7.157 22 F -0.157 7.157 23 C -0.114 4.114 24 C 0.093 3.907 25 F -0.083 7.083 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.164 0.836 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.500 -7.997 -7.418 11.191 hybrid contribution 0.716 -0.763 0.541 1.178 sum -1.784 -8.761 -6.878 11.280 Atomic orbital electron populations 1.21711 0.97109 1.00519 1.01099 1.22139 0.94053 1.00799 1.01511 1.20994 0.84352 0.93112 0.99364 1.43764 0.99644 1.83619 1.01558 1.18954 1.07082 1.19308 0.93399 0.92122 1.25164 1.00356 0.94101 0.97759 1.69916 1.26407 1.14444 1.41082 0.86502 0.80911 0.78703 0.81492 1.20006 1.21477 1.20730 1.20218 1.01700 0.87119 0.86815 1.21664 0.90571 1.02246 0.91479 1.20890 1.02538 0.94002 0.98208 1.17209 0.91701 0.93469 0.86565 1.91521 1.75810 1.89560 1.54158 1.19460 1.04947 0.94680 1.03645 1.17974 0.74109 0.85773 0.75748 1.93159 1.60545 1.84431 1.77612 1.93220 1.48544 1.77988 1.95924 1.93213 1.91252 1.96298 1.34959 1.20732 0.99915 0.95631 0.95081 1.17321 0.93245 0.92232 0.87947 1.91646 1.74764 1.88903 1.52976 0.93760 0.93137 0.93357 0.93071 0.92441 0.93061 0.94414 0.93036 0.93331 0.86859 0.83620 0.83338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.15 0.37 -1.66 16 2 C -0.15 -2.47 6.23 -26.74 -0.17 -2.63 16 3 C 0.15 2.81 5.72 -4.04 -0.02 2.79 16 4 N -0.57 -12.63 2.41 -174.61 -0.42 -13.05 16 5 C -0.26 -6.43 8.31 -15.05 -0.13 -6.55 16 6 H 0.06 1.55 7.90 -52.49 -0.41 1.13 16 7 C 0.03 0.71 4.03 -17.43 -0.07 0.64 16 8 N -0.88 -23.19 11.44 55.49 0.63 -22.56 16 9 Si 0.90 20.66 28.96 -169.99 -4.92 15.74 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 C 0.17 3.47 5.18 -5.19 -0.03 3.44 16 14 C -0.05 -0.98 5.26 -104.56 -0.55 -1.53 16 15 C -0.14 -2.13 9.01 -39.52 -0.36 -2.49 16 16 C 0.13 2.03 7.13 -39.42 -0.28 1.75 16 17 F -0.13 -2.01 16.46 2.25 0.04 -1.97 16 18 C -0.22 -3.47 5.38 -104.56 -0.56 -4.03 16 19 C 0.52 7.52 3.03 36.00 0.11 7.63 16 20 F -0.18 -2.44 15.97 2.25 0.04 -2.41 16 21 F -0.18 -2.60 17.05 2.25 0.04 -2.56 16 22 F -0.18 -2.55 17.05 2.25 0.04 -2.51 16 23 C -0.09 -1.51 9.41 -39.52 -0.37 -1.89 16 24 C 0.11 2.12 7.21 -39.43 -0.28 1.84 16 25 F -0.10 -2.26 13.89 2.25 0.03 -2.23 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.89 7.28 -51.93 -0.38 0.51 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.04 0.66 7.83 -51.93 -0.41 0.26 16 33 H 0.26 6.69 8.31 -40.82 -0.34 6.36 16 34 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16 35 H 0.11 2.70 5.47 -51.93 -0.28 2.42 16 36 H 0.15 1.98 8.00 -52.49 -0.42 1.56 16 37 H 0.15 2.11 7.15 -52.49 -0.38 1.74 16 LS Contribution 330.61 15.07 4.98 4.98 Total: -1.00 -25.43 330.61 -5.81 -31.24 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -3.92 Total: -1.97 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -2.34 Total: -2.70 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.21 Total: -35.61 kcal Atomic # 9 Polarization: -11.86 SS G_CDS: 0.18 Total: -11.68 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.92 Total: 15.74 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -25.43 -5.81 -31.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347074943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.005 kcal (2) G-P(sol) polarization free energy of solvation -25.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds