Wall clock time and date at job start Tue Mar 31 2020 14:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47279 * 2 1 4 4 N 1.46503 * 109.47261 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99479 * 275.31589 * 4 3 2 6 6 H 1.07989 * 120.00229 * 38.95610 * 5 4 3 7 7 C 1.38819 * 119.99331 * 218.95831 * 5 4 3 8 8 N 1.31617 * 120.00423 * 19.27740 * 7 5 4 9 9 Si 1.86805 * 119.99296 * 199.27678 * 7 5 4 10 10 H 1.48502 * 109.46999 * 60.00127 * 9 7 5 11 11 H 1.48500 * 109.46766 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47259 * 299.99782 * 9 7 5 13 13 C 1.46501 * 120.00371 * 95.31147 * 4 3 2 14 14 C 1.50705 * 109.46868 * 270.00091 * 13 4 3 15 15 C 1.38200 * 119.99708 * 105.00107 * 14 13 4 16 16 C 1.38433 * 119.99964 * 179.97438 * 15 14 13 17 17 F 1.35102 * 119.99810 * 179.97438 * 16 15 14 18 18 C 1.38471 * 119.99893 * 359.97438 * 16 15 14 19 19 C 1.50697 * 119.99974 * 179.97438 * 18 16 15 20 20 F 1.39900 * 109.46928 * 180.02562 * 19 18 16 21 21 F 1.39907 * 109.47146 * 300.00069 * 19 18 16 22 22 F 1.39895 * 109.47006 * 60.00207 * 19 18 16 23 23 C 1.38166 * 119.99923 * 0.02562 * 18 16 15 24 24 C 1.38427 * 120.00051 * 284.71914 * 14 13 4 25 25 F 1.35104 * 119.99949 * 0.03195 * 24 14 13 26 26 H 1.08998 * 109.47337 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47354 * 300.00267 * 1 2 3 28 28 H 1.09000 * 109.47223 * 59.99559 * 1 2 3 29 29 H 1.09006 * 109.47354 * 239.99733 * 2 1 3 30 30 H 1.09004 * 109.47063 * 119.99951 * 2 1 3 31 31 H 1.08994 * 109.47306 * 60.00274 * 3 2 1 32 32 H 1.09004 * 109.47032 * 299.99970 * 3 2 1 33 33 H 0.96997 * 120.00016 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.46814 * 29.99908 * 13 4 3 35 35 H 1.08998 * 109.46902 * 150.00186 * 13 4 3 36 36 H 1.07999 * 120.00266 * 359.95632 * 15 14 13 37 37 H 1.07995 * 119.99620 * 179.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.3324 1.1800 6 1 3.8305 0.6698 1.9532 7 6 5.3468 2.0727 1.3827 8 7 5.5863 3.1350 0.6436 9 14 6.5633 1.5609 2.7048 10 1 7.0597 0.1912 2.4172 11 1 7.7061 2.5091 2.7196 12 1 5.8910 1.5760 4.0288 13 6 4.2370 1.5601 -1.2641 14 6 4.4879 0.1856 -1.8291 15 6 3.7475 -0.2646 -2.9057 16 6 3.9783 -1.5269 -3.4250 17 9 3.2541 -1.9672 -4.4771 18 6 4.9514 -2.3382 -2.8661 19 6 5.2023 -3.7125 -3.4311 20 9 6.2231 -4.3358 -2.7053 21 9 4.0329 -4.4751 -3.3393 22 9 5.5834 -3.6028 -4.7726 23 6 5.6916 -1.8880 -1.7898 24 6 5.4640 -0.6235 -1.2734 25 9 6.1913 -0.1813 -0.2242 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 6.3948 3.6520 0.7850 34 1 3.6477 2.1421 -1.9726 35 1 5.1895 2.0596 -1.0870 36 1 2.9886 0.3682 -3.3416 37 1 6.4503 -2.5209 -1.3537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347074943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:22 Heat of formation + Delta-G solvation = -211.229818 kcal Electronic energy + Delta-G solvation = -28744.685451 eV Core-core repulsion = 23936.228143 eV Total energy + Delta-G solvation = -4808.457307 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.100 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.34248 -50.17292 -49.70797 -48.77679 -48.75102 -40.24435 -37.87939 -34.69028 -33.95569 -32.18912 -31.24021 -28.85189 -27.32632 -26.00193 -24.24189 -23.88807 -22.40823 -21.78256 -19.87363 -19.69043 -19.64245 -18.82196 -18.21607 -18.06774 -17.12265 -16.95798 -16.71546 -16.34599 -15.90131 -15.74511 -15.60570 -15.59426 -15.33851 -15.18914 -15.18220 -14.90838 -14.86820 -14.81140 -14.53415 -13.88705 -13.75197 -13.54744 -13.32951 -13.09907 -12.99484 -12.71896 -12.51864 -12.47331 -12.21419 -12.03623 -11.89449 -11.82475 -11.36457 -10.51501 -10.29961 -9.66402 -8.58307 -7.86269 -5.47504 -0.44031 -0.13838 1.41890 1.45369 1.48703 1.54000 2.06784 2.45166 2.51659 2.71439 2.92344 3.24219 3.26922 3.36400 3.54734 3.74652 3.79619 4.02437 4.27523 4.32237 4.43292 4.55870 4.59194 4.68100 4.79823 4.84812 4.96578 5.00035 5.18833 5.24659 5.28153 5.45195 5.53403 5.63323 5.65651 5.72035 6.46668 7.15602 7.81172 8.32780 9.10431 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.005287 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.014445 B = 5294.244435 C = 6431.129400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C 0.146 3.854 4 N -0.585 5.585 5 C -0.258 4.258 6 H 0.046 0.954 7 C -0.005 4.005 8 N -0.907 5.907 9 Si 0.931 3.069 10 H -0.276 1.276 11 H -0.293 1.293 12 H -0.280 1.280 13 C 0.172 3.828 14 C -0.060 4.060 15 C -0.120 4.120 16 C 0.136 3.864 17 F -0.125 7.125 18 C -0.216 4.216 19 C 0.524 3.476 20 F -0.171 7.171 21 F -0.174 7.174 22 F -0.173 7.173 23 C -0.084 4.084 24 C 0.088 3.912 25 F -0.128 7.128 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.035 0.965 32 H 0.055 0.945 33 H 0.254 0.746 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.172 0.828 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.750 -9.747 -9.051 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.021 3.979 4 N -0.304 5.304 5 C -0.388 4.388 6 H 0.064 0.936 7 C -0.203 4.203 8 N -0.550 5.550 9 Si 0.760 3.240 10 H -0.202 1.202 11 H -0.219 1.219 12 H -0.206 1.206 13 C 0.046 3.954 14 C -0.064 4.064 15 C -0.140 4.140 16 C 0.116 3.884 17 F -0.103 7.103 18 C -0.219 4.219 19 C 0.470 3.530 20 F -0.152 7.152 21 F -0.156 7.156 22 F -0.154 7.154 23 C -0.103 4.103 24 C 0.068 3.932 25 F -0.106 7.106 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.189 0.811 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.637 -9.599 -9.016 13.662 hybrid contribution 1.023 -0.407 0.864 1.400 sum -2.614 -10.006 -8.152 13.169 Atomic orbital electron populations 1.21653 0.94413 1.01669 1.02020 1.21960 0.96265 0.98779 1.00252 1.21085 0.82888 0.94541 0.99428 1.43872 1.00792 1.84413 1.01324 1.18907 1.07156 1.18366 0.94357 0.93605 1.25515 1.01459 0.94314 0.99053 1.69997 1.26602 1.15618 1.42785 0.85930 0.79693 0.78083 0.80291 1.20198 1.21881 1.20592 1.19987 1.00275 0.88438 0.86695 1.21419 0.91513 1.00729 0.92764 1.21022 1.01916 0.94235 0.96801 1.17197 0.91421 0.93320 0.86450 1.91550 1.75583 1.89432 1.53745 1.19638 1.04148 0.95179 1.02925 1.17775 0.74266 0.85181 0.75810 1.93179 1.60270 1.84242 1.77488 1.93229 1.48563 1.77854 1.95928 1.93226 1.91222 1.96259 1.34718 1.20826 0.99973 0.94706 0.94758 1.17654 0.93983 0.93524 0.88031 1.91586 1.75421 1.89340 1.54254 0.92480 0.92891 0.91808 0.93185 0.94769 0.94645 0.92624 0.93706 0.91778 0.90078 0.81051 0.81582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.91 71.98 0.71 -2.80 16 2 C -0.13 -4.33 6.23 30.59 0.19 -4.14 16 3 C 0.15 5.44 5.72 86.38 0.49 5.94 16 4 N -0.59 -26.11 2.41 -706.34 -1.70 -27.81 16 5 C -0.26 -13.12 8.31 84.03 0.70 -12.42 16 6 H 0.05 2.42 7.90 -2.92 -0.02 2.40 16 7 C 0.00 -0.24 4.03 84.86 0.34 0.11 16 8 N -0.91 -49.39 11.44 21.65 0.25 -49.14 16 9 Si 0.93 43.35 28.96 68.60 1.99 45.34 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.17 7.09 5.18 85.63 0.44 7.54 16 14 C -0.06 -2.10 5.26 -19.83 -0.10 -2.21 16 15 C -0.12 -3.42 9.01 22.31 0.20 -3.22 16 16 C 0.14 3.79 7.13 22.37 0.16 3.95 16 17 F -0.12 -3.33 16.46 44.97 0.74 -2.59 16 18 C -0.22 -6.07 5.38 -19.83 -0.11 -6.18 16 19 C 0.52 13.60 3.03 71.23 0.22 13.82 16 20 F -0.17 -4.24 15.97 44.97 0.72 -3.53 16 21 F -0.17 -4.62 17.05 44.97 0.77 -3.85 16 22 F -0.17 -4.47 17.05 44.97 0.77 -3.70 16 23 C -0.08 -2.53 9.41 22.31 0.21 -2.32 16 24 C 0.09 3.25 7.21 22.37 0.16 3.41 16 25 F -0.13 -5.60 13.89 44.97 0.62 -4.97 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.62 7.28 -2.38 -0.02 1.60 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 32 H 0.06 1.86 7.83 -2.39 -0.02 1.84 16 33 H 0.25 13.56 8.31 -92.71 -0.77 12.78 16 34 H 0.06 2.35 7.67 -2.39 -0.02 2.34 16 35 H 0.08 3.97 5.47 -2.39 -0.01 3.95 16 36 H 0.17 3.99 8.00 -2.91 -0.02 3.97 16 37 H 0.17 4.38 7.15 -2.91 -0.02 4.36 16 Total: -1.00 -54.94 330.61 8.89 -46.06 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: 1.12 Total: 2.73 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 3.62 Total: 1.48 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -1.45 Total: -76.95 kcal Atomic # 9 Polarization: -22.26 SS G_CDS: 3.62 Total: -18.65 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.99 Total: 45.34 kcal Total: -54.94 8.89 -46.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347074943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.174 kcal (2) G-P(sol) polarization free energy of solvation -54.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds