Wall clock time and date at job start Tue Mar 31 2020 14:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47020 * 2 1 4 4 N 1.46502 * 109.46896 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00008 * 262.99031 * 4 3 2 6 6 H 1.07994 * 120.00278 * 142.21056 * 5 4 3 7 7 C 1.38954 * 119.99872 * 322.20790 * 5 4 3 8 8 N 1.31411 * 119.99834 * 157.13559 * 7 5 4 9 9 Si 1.86793 * 119.99951 * 337.13217 * 7 5 4 10 10 H 1.48499 * 109.47201 * 95.20728 * 9 7 5 11 11 H 1.48510 * 109.47003 * 215.20648 * 9 7 5 12 12 H 1.48493 * 109.47517 * 335.20716 * 9 7 5 13 13 C 1.34769 * 119.99825 * 82.98891 * 4 3 2 14 14 O 1.21291 * 120.00204 * 179.97438 * 13 4 3 15 15 C 1.50707 * 120.00178 * 359.97438 * 13 4 3 16 16 C 1.50696 * 109.47278 * 179.97438 * 15 13 4 17 17 C 1.37974 * 119.87736 * 265.00545 * 16 15 13 18 18 C 1.38338 * 120.33663 * 180.02562 * 17 16 15 19 19 Cl 1.73607 * 120.12708 * 179.85170 * 18 17 16 20 20 C 1.38486 * 119.74534 * 359.82468 * 18 17 16 21 21 C 1.37697 * 119.96464 * 0.02562 * 20 18 17 22 22 C 1.38923 * 120.79929 * 0.33385 * 21 20 18 23 23 O 1.36416 * 111.30605 * 179.11861 * 22 21 20 24 24 C 1.43770 * 109.09813 * 18.73928 * 23 22 21 25 25 C 1.51649 * 132.16406 * 180.37666 * 21 20 18 26 26 H 1.09000 * 109.47283 * 299.99622 * 1 2 3 27 27 H 1.09001 * 109.47643 * 59.99677 * 1 2 3 28 28 H 1.09007 * 109.47391 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46664 * 239.99966 * 2 1 3 30 30 H 1.09002 * 109.47169 * 120.00098 * 2 1 3 31 31 H 1.09000 * 109.46783 * 60.00072 * 3 2 1 32 32 H 1.08991 * 109.47173 * 300.00522 * 3 2 1 33 33 H 0.97001 * 120.00111 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.46461 * 59.99954 * 15 13 4 35 35 H 1.08998 * 109.47279 * 300.00201 * 15 13 4 36 36 H 1.07999 * 119.82484 * 359.97070 * 17 16 15 37 37 H 1.07998 * 120.01989 * 180.02562 * 20 18 17 38 38 H 1.08996 * 110.74555 * 214.07429 * 24 23 22 39 39 H 1.09007 * 110.74413 * 90.91858 * 24 23 22 40 40 H 1.09001 * 110.93613 * 46.41352 * 25 21 20 41 41 H 1.09001 * 110.93995 * 282.73060 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5875 1.1793 6 1 5.1000 1.0307 1.3471 7 6 3.7134 2.4511 2.1581 8 7 4.0660 2.2810 3.4125 9 14 2.5717 3.8537 1.6906 10 1 1.1618 3.4302 1.8853 11 1 2.8578 5.0316 2.5486 12 1 2.7880 4.2144 0.2665 13 6 4.1793 1.2998 -1.1575 14 8 5.3922 1.3003 -1.1571 15 6 3.4263 1.1398 -2.4531 16 6 4.4060 1.0005 -3.5897 17 6 4.7729 2.1116 -4.3209 18 6 5.6711 1.9945 -5.3665 19 17 6.1260 3.3955 -6.2854 20 6 6.2064 0.7556 -5.6770 21 6 5.8433 -0.3533 -4.9459 22 6 4.9366 -0.2492 -3.8986 23 8 4.7027 -1.4636 -3.3229 24 6 5.7665 -2.3641 -3.6756 25 6 6.2529 -1.8106 -5.0358 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.7330 2.8836 4.0959 34 1 2.7994 2.0158 -2.6195 35 1 2.7999 0.2492 -2.4017 36 1 4.3560 3.0773 -4.0762 37 1 6.9083 0.6593 -6.4921 38 1 5.3909 -3.3815 -3.7846 39 1 6.5657 -2.3264 -2.9352 40 1 7.3346 -1.9061 -5.1308 41 1 5.7454 -2.3077 -5.8625 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347659901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:42 Heat of formation + Delta-G solvation = -63.892125 kcal Electronic energy + Delta-G solvation = -25522.018895 eV Core-core repulsion = 21813.604050 eV Total energy + Delta-G solvation = -3708.414845 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.19658 -40.64987 -38.80196 -37.39830 -37.06545 -34.90164 -34.34634 -33.28880 -32.03701 -30.27501 -29.13255 -27.38233 -26.30969 -24.34740 -23.24676 -22.76338 -22.37358 -20.49771 -18.94050 -18.43320 -18.04181 -17.88357 -17.30802 -17.15865 -16.83942 -16.08253 -15.79693 -15.42998 -15.05652 -14.69989 -14.59645 -14.50741 -14.27661 -14.07719 -14.05529 -13.77177 -13.47165 -13.33519 -13.14819 -12.81876 -12.73768 -12.60476 -12.47944 -12.37902 -12.26462 -12.11644 -11.87491 -11.73309 -11.42159 -11.41278 -11.03471 -10.46726 -9.82555 -9.69509 -9.04212 -8.52166 -6.12835 0.11529 0.14592 1.09978 1.17745 1.30372 1.42691 1.95466 2.17029 2.22328 2.49253 2.78125 3.00831 3.37943 3.51801 3.77015 3.91468 3.95504 4.04689 4.10097 4.13735 4.17191 4.30851 4.35541 4.46308 4.51887 4.57560 4.63155 4.68746 4.80136 4.87294 4.92746 5.01165 5.05913 5.13532 5.19625 5.26424 5.30067 5.44790 5.46537 5.56835 6.03436 6.07800 6.57283 6.95362 7.31085 7.89059 8.65432 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012930 B = 0.004360 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.930897 B = 6420.810296 C = 7345.921036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.084 3.916 4 N -0.477 5.477 5 C -0.330 4.330 6 H 0.039 0.961 7 C 0.015 3.985 8 N -0.910 5.910 9 Si 0.941 3.059 10 H -0.237 1.237 11 H -0.288 1.288 12 H -0.256 1.256 13 C 0.466 3.534 14 O -0.609 6.609 15 C -0.087 4.087 16 C -0.083 4.083 17 C -0.078 4.078 18 C -0.068 4.068 19 Cl -0.061 7.061 20 C -0.064 4.064 21 C -0.170 4.170 22 C 0.104 3.896 23 O -0.323 6.323 24 C 0.039 3.961 25 C -0.094 4.094 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.279 0.721 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.145 0.855 37 H 0.161 0.839 38 H 0.139 0.861 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -5.465 -20.707 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.039 4.039 4 N -0.199 5.199 5 C -0.458 4.458 6 H 0.057 0.943 7 C -0.188 4.188 8 N -0.548 5.548 9 Si 0.764 3.236 10 H -0.162 1.162 11 H -0.215 1.215 12 H -0.180 1.180 13 C 0.256 3.744 14 O -0.494 6.494 15 C -0.126 4.126 16 C -0.084 4.084 17 C -0.096 4.096 18 C -0.095 4.095 19 Cl -0.032 7.032 20 C -0.082 4.082 21 C -0.171 4.171 22 C 0.059 3.941 23 O -0.237 6.237 24 C -0.035 4.035 25 C -0.131 4.131 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.163 0.837 37 H 0.179 0.821 38 H 0.156 0.844 39 H 0.084 0.916 40 H 0.132 0.868 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.481 -5.382 -20.416 21.583 hybrid contribution 0.344 0.763 0.813 1.167 sum -4.136 -4.620 -19.603 20.560 Atomic orbital electron populations 1.21699 0.92680 1.02907 1.02682 1.21856 0.97840 0.95672 1.01769 1.22167 0.80173 0.98846 1.02670 1.43862 1.05553 1.65356 1.05104 1.18568 1.09602 1.25546 0.92112 0.94337 1.26118 0.99418 0.99194 0.94031 1.69885 1.46278 1.37591 1.01017 0.85935 0.79734 0.78476 0.79457 1.16179 1.21477 1.18031 1.21034 0.87878 0.79943 0.85539 1.90524 1.16414 1.55109 1.87319 1.20637 0.97142 1.05987 0.88876 1.18656 1.01994 0.89955 0.97792 1.20745 0.96874 0.98243 0.93763 1.20616 1.01936 0.89145 0.97756 1.98345 1.91745 1.40436 1.72715 1.20305 0.99305 0.88658 0.99964 1.21024 1.01294 0.97561 0.97199 1.19689 0.95536 0.86558 0.92359 1.86881 1.46300 1.18936 1.71602 1.24159 0.88790 0.94709 0.95812 1.21861 1.04414 0.88528 0.98300 0.92981 0.90461 0.91147 0.91350 0.94005 0.91830 0.88449 0.91100 0.86041 0.87002 0.83718 0.82117 0.84357 0.91600 0.86835 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.91 71.98 0.71 -2.65 16 2 C -0.13 -4.37 6.13 30.60 0.19 -4.19 16 3 C 0.08 3.20 3.74 86.38 0.32 3.53 16 4 N -0.48 -23.68 2.18 -635.55 -1.39 -25.07 16 5 C -0.33 -19.95 9.35 84.04 0.79 -19.17 16 6 H 0.04 2.75 7.92 -2.91 -0.02 2.72 16 7 C 0.01 0.83 5.24 84.93 0.45 1.28 16 8 N -0.91 -55.16 13.96 21.66 0.30 -54.86 16 9 Si 0.94 42.30 25.11 68.60 1.72 44.03 16 10 H -0.24 -9.23 6.67 99.48 0.66 -8.57 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 13 C 0.47 22.46 7.56 87.66 0.66 23.12 16 14 O -0.61 -35.32 15.91 -3.06 -0.05 -35.37 16 15 C -0.09 -3.02 4.40 29.10 0.13 -2.89 16 16 C -0.08 -2.81 4.39 -19.69 -0.09 -2.90 16 17 C -0.08 -2.38 9.43 22.23 0.21 -2.17 16 18 C -0.07 -1.83 6.33 22.35 0.14 -1.69 16 19 Cl -0.06 -1.44 28.97 -2.72 -0.08 -1.52 16 20 C -0.06 -1.54 9.82 22.20 0.22 -1.32 16 21 C -0.17 -4.40 6.27 -19.53 -0.12 -4.52 16 22 C 0.10 3.41 6.75 22.67 0.15 3.56 16 23 O -0.32 -10.38 11.07 -98.33 -1.09 -11.46 16 24 C 0.04 0.87 8.00 72.56 0.58 1.45 16 25 C -0.09 -1.65 7.12 30.73 0.22 -1.44 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.07 2.13 6.38 -2.39 -0.02 2.11 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 2.58 3.72 -2.39 -0.01 2.57 16 32 H 0.10 2.95 6.74 -2.39 -0.02 2.94 16 33 H 0.28 15.49 8.31 -92.71 -0.77 14.71 16 34 H 0.12 3.41 7.33 -2.38 -0.02 3.39 16 35 H 0.11 3.50 6.32 -2.39 -0.02 3.48 16 36 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 38 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -79.54 350.50 4.99 -74.55 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 1.01 Total: 19.70 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 4.56 Total: -10.00 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -1.09 Total: -79.93 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -1.14 Total: -46.84 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.72 Total: 44.03 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -79.54 4.99 -74.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347659901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.663 kcal (2) G-P(sol) polarization free energy of solvation -79.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds