Wall clock time and date at job start Tue Mar 31 2020 13:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47210 * 2 1 4 4 C 1.53002 * 109.46992 * 240.00169 * 2 1 3 5 5 C 1.50700 * 109.47209 * 60.00243 * 4 2 1 6 6 H 1.08004 * 119.99971 * 359.97438 * 5 4 2 7 7 C 1.37870 * 119.99942 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99773 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47221 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47180 * 119.99897 * 9 7 5 12 12 H 1.48510 * 109.46804 * 239.99576 * 9 7 5 13 13 C 1.53003 * 109.47332 * 120.00260 * 2 1 3 14 14 N 1.46498 * 109.46788 * 299.99570 * 13 2 1 15 15 S 1.65607 * 119.99651 * 165.00022 * 14 13 2 16 16 O 1.42097 * 106.40132 * 311.45977 * 15 14 13 17 17 O 1.42107 * 106.39904 * 178.54249 * 15 14 13 18 18 C 1.76199 * 107.21942 * 65.00149 * 15 14 13 19 19 C 1.38348 * 120.34178 * 269.72790 * 18 15 14 20 20 N 1.31928 * 121.09156 * 179.68167 * 19 18 15 21 21 C 1.31690 * 121.88467 * 0.62213 * 20 19 18 22 22 C 1.39588 * 120.55551 * 359.66561 * 21 20 19 23 23 C 1.43201 * 120.56863 * 179.97438 * 22 21 20 24 24 N 8.52141 * 127.70538 * 77.01267 * 2 1 3 25 25 C 1.38342 * 120.34127 * 89.99987 * 18 15 14 26 26 H 1.09011 * 109.46836 * 300.00071 * 1 2 3 27 27 H 1.09000 * 109.47279 * 59.99354 * 1 2 3 28 28 H 1.08993 * 109.47184 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46902 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47057 * 300.00358 * 3 2 1 31 31 H 1.08995 * 109.47216 * 60.00636 * 3 2 1 32 32 H 1.08997 * 109.47357 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47175 * 299.99751 * 4 2 1 34 34 H 0.97004 * 119.99950 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46989 * 180.02562 * 13 2 1 36 36 H 1.08992 * 109.47240 * 59.99848 * 13 2 1 37 37 H 0.96995 * 120.00383 * 344.99985 * 14 13 2 38 38 H 1.07997 * 119.45751 * 359.96906 * 19 18 15 39 39 H 1.07997 * 119.72610 * 179.68327 * 21 20 19 40 40 H 1.08004 * 120.86309 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8703 -0.4821 -3.7319 8 7 2.6263 -1.5514 -3.8527 9 14 1.2470 0.3982 -5.2571 10 1 0.4217 1.5646 -4.8529 11 1 2.4017 0.8648 -6.0660 12 1 0.4218 -0.5355 -6.0650 13 6 2.0400 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 16 1.6258 -0.7782 3.9212 16 8 1.0840 -2.0792 3.7396 17 8 1.1157 0.1510 4.8677 18 6 3.3303 -0.9988 4.3093 19 6 3.9898 -2.1541 3.9293 20 7 5.2672 -2.3319 4.2067 21 6 5.9683 -1.4315 4.8639 22 6 5.3751 -0.2410 5.2876 23 6 6.1370 0.7381 6.0028 24 7 6.7417 1.5151 6.5694 25 6 4.0215 -0.0209 5.0021 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1299 -0.7217 -1.2491 33 1 1.6766 -1.7489 -1.2493 34 1 2.8606 -1.8828 -4.7338 35 1 3.1300 -0.7209 1.2494 36 1 1.6767 -1.7489 1.2492 37 1 1.1852 0.8644 2.3729 38 1 3.4511 -2.9210 3.3927 39 1 7.0110 -1.6154 5.0767 40 1 3.5303 0.8889 5.3143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352729561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:42 Heat of formation + Delta-G solvation = -19.854985 kcal Electronic energy + Delta-G solvation = -24766.935856 eV Core-core repulsion = 21094.767062 eV Total energy + Delta-G solvation = -3672.168794 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85867 -37.88238 -37.38640 -37.08711 -36.05094 -33.70889 -33.40839 -32.34926 -31.97927 -27.10305 -26.54724 -26.00488 -25.38721 -24.69979 -22.83115 -20.69383 -19.22805 -18.56267 -17.69705 -17.50904 -17.37238 -16.74212 -16.41240 -15.76470 -15.07822 -14.63089 -14.58830 -14.27303 -14.00745 -13.84437 -13.65638 -13.59280 -13.45679 -13.05004 -12.91231 -12.54730 -12.30060 -12.22293 -12.14350 -12.03203 -11.81580 -11.30712 -11.06443 -10.88069 -10.85429 -10.69177 -10.49134 -10.29307 -10.22542 -9.99432 -9.96485 -9.43209 -9.24947 -8.96845 -8.40852 -6.05232 -4.06123 -0.21338 0.12811 0.29358 2.10234 2.31428 2.83197 3.12140 3.18404 3.27233 3.35982 3.38134 3.52557 3.74686 3.97301 4.09956 4.23294 4.41416 4.59890 4.73832 5.12338 5.12933 5.18944 5.30708 5.44667 5.63639 5.71665 5.73259 6.01642 6.12298 6.22950 6.31161 6.58964 6.61553 6.88183 6.94254 7.00372 7.05458 7.07548 7.12044 7.56658 7.68692 7.93398 8.35465 8.98723 9.57611 11.06168 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.003233 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.587096 B = 8659.826285 C = 9247.605514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.120 3.880 14 N -1.105 6.105 15 S 2.699 3.301 16 O -0.944 6.944 17 O -0.959 6.959 18 C -0.735 4.735 19 C 0.231 3.769 20 N -0.486 5.486 21 C 0.204 3.796 22 C -0.102 4.102 23 C 0.256 3.744 24 N -0.398 5.398 25 C 0.076 3.924 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.259 0.741 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.420 0.580 38 H 0.186 0.814 39 H 0.176 0.824 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 0.931 17.010 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.066 4.066 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.005 4.005 14 N -0.869 5.869 15 S 2.784 3.216 16 O -0.934 6.934 17 O -0.949 6.949 18 C -0.820 4.820 19 C 0.073 3.927 20 N -0.194 5.194 21 C 0.044 3.956 22 C -0.108 4.108 23 C -0.061 4.061 24 N -0.073 5.073 25 C 0.047 3.953 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.257 0.743 38 H 0.203 0.797 39 H 0.193 0.807 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.535 0.798 18.033 18.393 hybrid contribution -0.164 1.322 -1.083 1.717 sum 3.371 2.121 16.950 17.411 Atomic orbital electron populations 1.21768 0.94966 1.01442 1.00485 1.20815 0.95801 0.95681 0.94345 1.21778 1.00379 0.96002 1.00480 1.19138 0.96276 0.95384 0.89595 1.21217 1.31124 1.12106 0.90472 0.92166 1.24998 0.95295 0.95059 0.99091 1.69961 1.37016 1.23034 1.23380 0.86606 0.78616 0.79714 0.83456 1.19803 1.21175 1.21116 1.21692 0.98081 0.96583 0.84192 1.55486 1.77924 1.30864 1.22655 1.01962 0.72947 0.74011 0.72674 1.93625 1.74712 1.39490 1.85591 1.93599 1.77273 1.63604 1.60401 1.32290 1.29979 1.04191 1.15586 1.23043 0.89677 0.92733 0.87279 1.68022 1.07735 1.30561 1.13103 1.23402 1.00186 0.85986 0.86036 1.16993 0.93750 0.94871 1.05234 1.25168 0.93904 0.93334 0.93647 1.81314 1.08039 1.08858 1.09057 1.21401 0.91310 0.96636 0.85950 0.94846 0.91506 0.93133 0.93395 0.91317 0.95026 0.96372 0.96129 0.93080 0.92067 0.90081 0.74265 0.79739 0.80700 0.81968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 2 C -0.06 -1.09 0.55 -154.51 -0.08 -1.17 16 3 C -0.13 -2.01 8.05 37.16 0.30 -1.71 16 4 C 0.03 0.76 4.04 -27.88 -0.11 0.64 16 5 C -0.51 -12.85 7.65 -34.44 -0.26 -13.12 16 6 H 0.06 1.47 5.68 -52.48 -0.30 1.17 16 7 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 8 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 9 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.12 1.61 5.11 -4.04 -0.02 1.59 16 14 N -1.11 -12.04 5.33 -10.62 -0.06 -12.10 16 15 S 2.70 28.75 5.75 -107.50 -0.62 28.13 16 16 O -0.94 -12.52 16.76 -57.17 -0.96 -13.48 16 17 O -0.96 -11.89 17.35 -57.17 -0.99 -12.88 16 18 C -0.74 -6.62 5.96 -39.50 -0.24 -6.86 16 19 C 0.23 2.12 10.68 -17.47 -0.19 1.93 16 20 N -0.49 -4.49 10.35 -12.89 -0.13 -4.62 16 21 C 0.20 1.48 10.92 -17.11 -0.19 1.29 16 22 C -0.10 -0.79 5.75 -106.78 -0.61 -1.40 16 23 C 0.26 2.28 15.37 -22.47 -0.35 1.93 16 24 N -0.40 -4.45 18.54 41.84 0.78 -3.67 16 25 C 0.08 0.61 9.38 -38.85 -0.36 0.24 16 26 H 0.03 0.45 7.20 -51.92 -0.37 0.08 16 27 H 0.07 1.20 6.62 -51.93 -0.34 0.85 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 31 H 0.03 0.39 6.60 -51.93 -0.34 0.05 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.10 7.75 -51.93 -0.40 0.69 16 37 H 0.42 4.13 6.47 -34.47 -0.22 3.90 16 38 H 0.19 1.47 7.61 -52.49 -0.40 1.07 16 39 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.16 1.05 7.70 -52.48 -0.40 0.64 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -32.46 354.51 -7.64 -40.10 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.80 Total: -0.77 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -1.91 Total: -17.03 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 1.32 Total: -44.93 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -1.95 Total: -26.36 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 28.75 SS G_CDS: -0.62 Total: 28.13 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.46 -7.64 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352729561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.249 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds