Wall clock time and date at job start Tue Mar 31 2020 13:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47210 * 2 1 4 4 C 1.53002 * 109.46992 * 240.00169 * 2 1 3 5 5 C 1.50700 * 109.47209 * 60.00243 * 4 2 1 6 6 H 1.08004 * 119.99971 * 359.97438 * 5 4 2 7 7 C 1.37870 * 119.99942 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99773 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47221 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47180 * 119.99897 * 9 7 5 12 12 H 1.48510 * 109.46804 * 239.99576 * 9 7 5 13 13 C 1.53003 * 109.47332 * 120.00260 * 2 1 3 14 14 N 1.46498 * 109.46788 * 299.99570 * 13 2 1 15 15 S 1.65607 * 119.99651 * 165.00022 * 14 13 2 16 16 O 1.42097 * 106.40132 * 311.45977 * 15 14 13 17 17 O 1.42107 * 106.39904 * 178.54249 * 15 14 13 18 18 C 1.76199 * 107.21942 * 65.00149 * 15 14 13 19 19 C 1.38348 * 120.34178 * 269.72790 * 18 15 14 20 20 N 1.31928 * 121.09156 * 179.68167 * 19 18 15 21 21 C 1.31690 * 121.88467 * 0.62213 * 20 19 18 22 22 C 1.39588 * 120.55551 * 359.66561 * 21 20 19 23 23 C 1.43201 * 120.56863 * 179.97438 * 22 21 20 24 24 N 8.52141 * 127.70538 * 77.01267 * 2 1 3 25 25 C 1.38342 * 120.34127 * 89.99987 * 18 15 14 26 26 H 1.09011 * 109.46836 * 300.00071 * 1 2 3 27 27 H 1.09000 * 109.47279 * 59.99354 * 1 2 3 28 28 H 1.08993 * 109.47184 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46902 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47057 * 300.00358 * 3 2 1 31 31 H 1.08995 * 109.47216 * 60.00636 * 3 2 1 32 32 H 1.08997 * 109.47357 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47175 * 299.99751 * 4 2 1 34 34 H 0.97004 * 119.99950 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46989 * 180.02562 * 13 2 1 36 36 H 1.08992 * 109.47240 * 59.99848 * 13 2 1 37 37 H 0.96995 * 120.00383 * 344.99985 * 14 13 2 38 38 H 1.07997 * 119.45751 * 359.96906 * 19 18 15 39 39 H 1.07997 * 119.72610 * 179.68327 * 21 20 19 40 40 H 1.08004 * 120.86309 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8703 -0.4821 -3.7319 8 7 2.6263 -1.5514 -3.8527 9 14 1.2470 0.3982 -5.2571 10 1 0.4217 1.5646 -4.8529 11 1 2.4017 0.8648 -6.0660 12 1 0.4218 -0.5355 -6.0650 13 6 2.0400 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 16 1.6258 -0.7782 3.9212 16 8 1.0840 -2.0792 3.7396 17 8 1.1157 0.1510 4.8677 18 6 3.3303 -0.9988 4.3093 19 6 3.9898 -2.1541 3.9293 20 7 5.2672 -2.3319 4.2067 21 6 5.9683 -1.4315 4.8639 22 6 5.3751 -0.2410 5.2876 23 6 6.1370 0.7381 6.0028 24 7 6.7417 1.5151 6.5694 25 6 4.0215 -0.0209 5.0021 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1299 -0.7217 -1.2491 33 1 1.6766 -1.7489 -1.2493 34 1 2.8606 -1.8828 -4.7338 35 1 3.1300 -0.7209 1.2494 36 1 1.6767 -1.7489 1.2492 37 1 1.1852 0.8644 2.3729 38 1 3.4511 -2.9210 3.3927 39 1 7.0110 -1.6154 5.0767 40 1 3.5303 0.8889 5.3143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352729561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:41 Heat of formation + Delta-G solvation = -42.573453 kcal Electronic energy + Delta-G solvation = -24767.921003 eV Core-core repulsion = 21094.767062 eV Total energy + Delta-G solvation = -3673.153941 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51778 -39.15816 -38.35246 -37.85455 -37.00037 -35.20335 -34.09157 -33.62320 -33.01256 -28.91009 -27.84945 -27.21635 -26.07031 -25.36106 -24.59958 -21.46321 -20.13104 -19.82726 -18.48646 -18.32563 -18.28334 -18.10152 -17.51748 -16.80872 -16.45289 -15.77266 -15.68772 -15.45679 -14.89466 -14.64542 -14.52209 -14.43266 -14.37114 -14.31079 -13.95712 -13.85253 -13.74393 -13.28305 -13.22274 -13.13547 -12.90250 -12.65230 -12.61147 -12.54112 -12.22328 -12.12991 -11.88351 -11.55860 -11.44643 -10.90412 -10.88668 -10.77165 -10.65043 -10.45231 -10.35476 -8.09235 -6.14389 -0.89462 -0.66891 -0.39807 1.39736 1.42890 1.45913 1.55577 1.61389 1.97937 2.42292 2.47834 2.49290 2.71166 3.08801 3.26207 3.35895 3.43653 3.57532 3.97002 3.97840 4.00350 4.21761 4.33481 4.50003 4.56523 4.60544 4.82314 4.87404 4.97657 5.08503 5.10823 5.24122 5.29339 5.56470 5.61996 5.63791 5.66677 5.92048 5.98946 6.11718 6.19593 6.40697 6.47854 7.01387 7.52729 9.02773 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.003233 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.587096 B = 8659.826285 C = 9247.605514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 C -0.126 4.126 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.067 0.933 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.948 3.052 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.127 3.873 14 N -1.100 6.100 15 S 2.723 3.277 16 O -0.972 6.972 17 O -0.973 6.973 18 C -0.736 4.736 19 C 0.226 3.774 20 N -0.504 5.504 21 C 0.214 3.786 22 C -0.101 4.101 23 C 0.283 3.717 24 N -0.438 5.438 25 C 0.079 3.921 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.069 0.931 32 H -0.004 1.004 33 H -0.007 1.007 34 H 0.258 0.742 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.427 0.573 38 H 0.191 0.809 39 H 0.206 0.794 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.663 2.069 18.208 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.085 0.915 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.775 3.225 10 H -0.186 1.186 11 H -0.212 1.212 12 H -0.213 1.213 13 C 0.001 3.999 14 N -0.864 5.864 15 S 2.810 3.190 16 O -0.962 6.962 17 O -0.963 6.963 18 C -0.824 4.824 19 C 0.067 3.933 20 N -0.212 5.212 21 C 0.054 3.946 22 C -0.107 4.107 23 C -0.033 4.033 24 N -0.113 5.113 25 C 0.050 3.950 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.266 0.734 38 H 0.208 0.792 39 H 0.222 0.778 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.466 1.966 19.232 19.641 hybrid contribution -0.121 0.935 -1.400 1.688 sum 3.345 2.901 17.832 18.374 Atomic orbital electron populations 1.21745 0.94546 1.01098 1.01185 1.20650 0.96126 0.96268 0.93351 1.21732 1.00337 0.94978 1.01307 1.19021 0.94775 0.94402 0.91862 1.21661 1.29966 1.11866 0.91423 0.91541 1.25806 0.95867 0.95876 1.02252 1.70088 1.38886 1.24795 1.23825 0.85645 0.78026 0.78853 0.79986 1.18572 1.21173 1.21277 1.21432 0.98819 0.96111 0.83514 1.55285 1.78183 1.31008 1.21930 1.01042 0.73057 0.72928 0.71973 1.93593 1.75991 1.40773 1.85839 1.93582 1.78125 1.63970 1.60585 1.31909 1.28746 1.04800 1.16922 1.23235 0.89972 0.92932 0.87122 1.68096 1.07783 1.31323 1.14024 1.23895 1.01275 0.85101 0.84336 1.16931 0.93517 0.94832 1.05436 1.25131 0.92962 0.92587 0.92643 1.81352 1.09344 1.10123 1.10500 1.21631 0.91453 0.96867 0.85037 0.91514 0.93378 0.94047 0.93500 0.93469 0.91202 0.98544 0.98839 0.93291 0.90756 0.90405 0.73430 0.79212 0.77751 0.80338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 8.05 71.98 0.58 -3.48 16 2 C -0.06 -2.04 0.55 -52.18 -0.03 -2.07 16 3 C -0.13 -3.71 8.05 71.98 0.58 -3.13 16 4 C 0.04 1.70 4.04 29.85 0.12 1.82 16 5 C -0.51 -25.96 7.65 25.60 0.20 -25.77 16 6 H 0.07 3.24 5.68 -2.91 -0.02 3.22 16 7 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 8 N -0.93 -54.10 13.29 21.44 0.28 -53.82 16 9 Si 0.95 42.44 29.54 68.60 2.03 44.47 16 10 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 11 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.13 3.24 5.11 86.38 0.44 3.68 16 14 N -1.10 -21.41 5.33 -187.50 -1.00 -22.41 16 15 S 2.72 52.91 5.75 -56.49 -0.32 52.59 16 16 O -0.97 -24.64 16.76 -128.00 -2.15 -26.79 16 17 O -0.97 -21.94 17.35 -128.00 -2.22 -24.16 16 18 C -0.74 -11.75 5.96 22.32 0.13 -11.62 16 19 C 0.23 3.77 10.68 84.70 0.90 4.68 16 20 N -0.50 -8.30 10.35 -194.71 -2.01 -10.32 16 21 C 0.21 2.55 10.92 85.04 0.93 3.48 16 22 C -0.10 -1.29 5.75 -21.26 -0.12 -1.42 16 23 C 0.28 4.43 15.37 88.33 1.36 5.79 16 24 N -0.44 -9.15 18.54 19.00 0.35 -8.80 16 25 C 0.08 1.06 9.38 22.74 0.21 1.28 16 26 H 0.07 1.64 7.20 -2.38 -0.02 1.62 16 27 H 0.05 1.68 6.62 -2.39 -0.02 1.67 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.05 1.58 6.62 -2.39 -0.02 1.57 16 31 H 0.07 1.50 6.60 -2.39 -0.02 1.49 16 32 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 34 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 2.05 7.75 -2.39 -0.02 2.03 16 37 H 0.43 7.02 6.47 -96.75 -0.63 6.39 16 38 H 0.19 2.84 7.61 -2.91 -0.02 2.81 16 39 H 0.21 1.08 8.06 -2.91 -0.02 1.06 16 40 H 0.18 1.79 7.70 -2.91 -0.02 1.76 16 Total: -1.00 -70.30 354.51 1.18 -69.12 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 0.46 Total: 6.47 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 5.77 Total: -26.35 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -2.38 Total: -95.35 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -4.37 Total: -50.95 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 52.91 SS G_CDS: -0.32 Total: 52.59 kcal Total: -70.30 1.18 -69.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352729561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.547 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds