Wall clock time and date at job start Tue Mar 31 2020 14:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47469 * 2 1 4 4 H 1.08990 * 109.47247 * 54.38221 * 3 2 1 5 5 C 1.50699 * 109.47302 * 174.38803 * 3 2 1 6 6 H 1.08002 * 120.00057 * 120.00195 * 5 3 2 7 7 C 1.37878 * 119.99810 * 299.99517 * 5 3 2 8 8 N 1.31511 * 120.00190 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99690 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47322 * 90.00449 * 9 7 5 11 11 H 1.48508 * 109.46940 * 210.00234 * 9 7 5 12 12 H 1.48496 * 109.47660 * 330.00119 * 9 7 5 13 13 N 1.46504 * 109.46627 * 294.38464 * 3 2 1 14 14 C 1.34777 * 120.00040 * 96.76715 * 13 3 2 15 15 O 1.21281 * 119.99645 * 354.51905 * 14 13 3 16 16 C 1.50697 * 120.00242 * 174.51881 * 14 13 3 17 17 O 1.42900 * 115.55093 * 355.15203 * 16 14 13 18 18 C 1.35922 * 116.99989 * 277.69456 * 17 16 14 19 19 C 1.38715 * 120.03989 * 4.42959 * 18 17 16 20 20 C 1.38152 * 119.95419 * 179.79024 * 19 18 17 21 21 C 1.38368 * 120.03962 * 0.46532 * 20 19 18 22 22 Cl 1.73597 * 119.95415 * 179.76402 * 21 20 19 23 23 C 1.38359 * 120.08604 * 359.78804 * 21 20 19 24 24 C 1.38148 * 120.04427 * 359.97438 * 23 21 20 25 25 C 1.53006 * 117.51610 * 140.85028 * 16 14 13 26 26 C 1.53002 * 117.49980 * 209.48164 * 16 14 13 27 27 H 1.08995 * 109.47348 * 300.00524 * 1 2 3 28 28 H 1.09010 * 109.46946 * 60.00475 * 1 2 3 29 29 H 1.09002 * 109.47267 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47573 * 239.99743 * 2 1 3 31 31 H 1.09001 * 109.47149 * 120.00088 * 2 1 3 32 32 H 0.96993 * 120.00051 * 179.97438 * 8 7 5 33 33 H 0.97000 * 120.00422 * 276.75514 * 13 3 2 34 34 H 1.08003 * 120.02781 * 0.02776 * 19 18 17 35 35 H 1.08001 * 119.97658 * 180.22973 * 20 19 18 36 36 H 1.07998 * 119.98043 * 179.97438 * 23 21 20 37 37 H 1.07999 * 120.02082 * 180.02562 * 24 23 21 38 38 H 1.08998 * 117.49914 * 214.97202 * 25 16 14 39 39 H 1.08997 * 117.49902 * 0.02562 * 25 16 14 40 40 H 1.08999 * 117.49610 * 359.97438 * 26 16 14 41 41 H 1.08997 * 117.49951 * 144.99942 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5970 1.9845 0.8353 5 6 3.5406 1.4447 0.1389 6 1 4.1537 1.8865 -0.6326 7 6 4.1307 0.8828 1.2512 8 7 3.3842 0.3444 2.1905 9 14 5.9907 0.8862 1.4237 10 1 6.4204 2.1216 2.1268 11 1 6.4175 -0.3021 2.2055 12 1 6.6130 0.8417 0.0762 13 7 1.6651 2.0929 -1.2581 14 6 0.5585 2.8600 -1.3165 15 8 -0.1805 2.9322 -0.3575 16 6 0.2393 3.6278 -2.5733 17 8 1.2267 3.5605 -3.6041 18 6 2.2858 4.4060 -3.5003 19 6 2.4203 5.2167 -2.3827 20 6 3.4998 6.0722 -2.2769 21 6 4.4414 6.1277 -3.2893 22 17 5.7938 7.2081 -3.1569 23 6 4.3062 5.3237 -4.4071 24 6 3.2307 4.4634 -4.5143 25 6 -1.2272 3.7016 -3.0034 26 6 -0.5369 4.9377 -2.4230 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7994 -0.0512 2.9727 33 1 2.2134 1.9716 -2.0490 34 1 1.6836 5.1763 -1.5939 35 1 3.6068 6.7008 -1.4053 36 1 5.0419 5.3687 -5.1965 37 1 3.1257 3.8356 -5.3868 38 1 -1.4388 3.6989 -4.0726 39 1 -1.9614 3.1951 -2.3770 40 1 -0.8171 5.2438 -1.4151 41 1 -0.2945 5.7481 -3.1104 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354690984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:30 Heat of formation + Delta-G solvation = -30.864118 kcal Electronic energy + Delta-G solvation = -25654.842470 eV Core-core repulsion = 21947.859827 eV Total energy + Delta-G solvation = -3706.982643 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.82008 -39.03494 -37.68950 -36.35495 -35.60644 -34.49518 -32.37664 -31.17779 -30.92164 -29.60966 -27.20641 -24.56275 -23.34746 -22.98164 -22.27446 -22.15539 -19.99558 -19.53629 -18.49759 -17.25164 -16.55280 -16.20230 -15.97124 -15.36210 -14.67908 -14.63240 -14.42651 -14.14283 -14.08485 -13.75256 -13.55199 -13.03859 -12.82932 -12.73485 -12.38633 -12.27721 -11.66849 -11.59709 -11.48124 -11.30353 -11.15485 -11.00463 -10.96038 -10.85900 -10.78424 -10.31969 -10.21535 -10.16636 -9.71824 -9.22652 -9.15660 -9.12880 -8.49842 -8.15086 -7.92382 -6.13358 -4.22273 1.17105 1.20865 2.14334 2.64840 3.00577 3.24603 3.31509 3.34165 3.57539 3.71834 3.94653 4.34367 4.57923 4.65994 4.77033 4.87126 5.05065 5.11528 5.18448 5.26176 5.38976 5.45816 5.64677 5.72310 5.84077 5.96522 5.97511 6.20223 6.23525 6.30428 6.35924 6.51591 6.56530 6.95810 7.09432 7.20971 7.27810 7.34397 7.57058 7.69005 7.89587 8.14082 8.56258 8.73890 8.99040 9.44792 10.91804 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.005661 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.117699 B = 4945.143256 C = 7433.622536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.692 5.692 14 C 0.528 3.472 15 O -0.541 6.541 16 C -0.004 4.004 17 O -0.270 6.270 18 C 0.131 3.869 19 C -0.173 4.173 20 C -0.067 4.067 21 C -0.070 4.070 22 Cl -0.078 7.078 23 C -0.075 4.075 24 C -0.139 4.139 25 C -0.120 4.120 26 C -0.166 4.166 27 H 0.048 0.952 28 H 0.033 0.967 29 H 0.028 0.972 30 H 0.032 0.968 31 H 0.102 0.898 32 H 0.264 0.736 33 H 0.391 0.609 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 9.978 -13.254 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.338 5.338 14 C 0.311 3.689 15 O -0.421 6.421 16 C -0.046 4.046 17 O -0.184 6.184 18 C 0.086 3.914 19 C -0.192 4.192 20 C -0.086 4.086 21 C -0.097 4.097 22 Cl -0.050 7.050 23 C -0.094 4.094 24 C -0.158 4.158 25 C -0.158 4.158 26 C -0.204 4.204 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.224 0.776 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.263 9.856 -12.480 16.234 hybrid contribution 1.505 0.005 -0.079 1.507 sum -1.758 9.861 -12.559 16.064 Atomic orbital electron populations 1.21743 0.98586 0.98477 1.00652 1.21932 0.92469 0.99823 1.02524 1.18887 0.94500 0.89343 0.80569 0.92700 1.21245 0.90739 1.38997 1.06010 0.92161 1.24857 0.98476 0.94768 0.95410 1.69878 1.35044 1.37885 1.09283 0.86498 0.85011 0.77673 0.78285 1.20535 1.21040 1.19792 1.46396 1.24313 1.47365 1.15687 1.19287 0.82669 0.80403 0.86575 1.90703 1.49214 1.65840 1.36331 1.22535 0.88275 1.03832 0.89996 1.86117 1.30277 1.56090 1.45866 1.19125 0.88074 0.90064 0.94122 1.21356 1.00562 0.98775 0.98512 1.20863 0.92234 0.98000 0.97510 1.20760 0.92421 0.98521 0.97976 1.98352 1.44797 1.63688 1.98115 1.20776 0.97456 0.94387 0.96770 1.20317 0.94230 1.02032 0.99185 1.23333 0.89905 0.99781 1.02757 1.23597 1.01493 0.90802 1.04493 0.93265 0.94794 0.95312 0.94880 0.88014 0.92568 0.77585 0.84319 0.84707 0.84462 0.84298 0.87148 0.86255 0.86417 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.86 37.15 0.33 -2.62 16 2 C -0.13 -3.07 5.45 -26.74 -0.15 -3.21 16 3 C 0.27 6.64 2.19 -69.08 -0.15 6.49 16 4 H 0.06 1.56 7.30 -51.93 -0.38 1.18 16 5 C -0.53 -14.02 8.77 -34.44 -0.30 -14.32 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.51 11.29 55.43 0.63 -23.89 16 9 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.69 -14.39 4.73 -54.93 -0.26 -14.65 16 14 C 0.53 10.17 5.58 -10.99 -0.06 10.11 16 15 O -0.54 -11.92 14.75 5.56 0.08 -11.84 16 16 C 0.00 -0.06 1.77 -91.77 -0.16 -0.22 16 17 O -0.27 -3.91 9.47 -19.49 -0.18 -4.10 16 18 C 0.13 1.84 6.39 -39.23 -0.25 1.59 16 19 C -0.17 -2.50 8.49 -39.44 -0.33 -2.83 16 20 C -0.07 -0.91 9.82 -39.57 -0.39 -1.30 16 21 C -0.07 -0.90 6.32 -39.49 -0.25 -1.15 16 22 Cl -0.08 -0.93 28.95 -51.86 -1.50 -2.44 16 23 C -0.08 -0.87 9.82 -39.57 -0.39 -1.26 16 24 C -0.14 -1.69 9.99 -39.44 -0.39 -2.08 16 25 C -0.12 -1.42 10.05 -26.72 -0.27 -1.68 16 26 C -0.17 -1.99 7.97 -26.72 -0.21 -2.20 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.70 6.49 -51.92 -0.34 0.36 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.10 2.68 5.94 -51.93 -0.31 2.38 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.39 7.70 7.81 -40.82 -0.32 7.38 16 34 H 0.14 2.12 5.34 -52.48 -0.28 1.83 16 35 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.12 1.44 8.13 -51.93 -0.42 1.01 16 40 H 0.12 1.47 7.97 -51.93 -0.41 1.06 16 41 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -28.90 356.80 -9.34 -38.24 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -5.39 Total: 10.46 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -3.08 Total: -12.97 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.37 Total: -38.54 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.10 Total: -15.94 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.90 -9.34 -38.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354690984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.379 kcal (2) G-P(sol) polarization free energy of solvation -28.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds