Wall clock time and date at job start Tue Mar 31 2020 14:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47469 * 2 1 4 4 H 1.08990 * 109.47247 * 54.38221 * 3 2 1 5 5 C 1.50699 * 109.47302 * 174.38803 * 3 2 1 6 6 H 1.08002 * 120.00057 * 120.00195 * 5 3 2 7 7 C 1.37878 * 119.99810 * 299.99517 * 5 3 2 8 8 N 1.31511 * 120.00190 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99690 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47322 * 90.00449 * 9 7 5 11 11 H 1.48508 * 109.46940 * 210.00234 * 9 7 5 12 12 H 1.48496 * 109.47660 * 330.00119 * 9 7 5 13 13 N 1.46504 * 109.46627 * 294.38464 * 3 2 1 14 14 C 1.34777 * 120.00040 * 96.76715 * 13 3 2 15 15 O 1.21281 * 119.99645 * 354.51905 * 14 13 3 16 16 C 1.50697 * 120.00242 * 174.51881 * 14 13 3 17 17 O 1.42900 * 115.55093 * 355.15203 * 16 14 13 18 18 C 1.35922 * 116.99989 * 277.69456 * 17 16 14 19 19 C 1.38715 * 120.03989 * 4.42959 * 18 17 16 20 20 C 1.38152 * 119.95419 * 179.79024 * 19 18 17 21 21 C 1.38368 * 120.03962 * 0.46532 * 20 19 18 22 22 Cl 1.73597 * 119.95415 * 179.76402 * 21 20 19 23 23 C 1.38359 * 120.08604 * 359.78804 * 21 20 19 24 24 C 1.38148 * 120.04427 * 359.97438 * 23 21 20 25 25 C 1.53006 * 117.51610 * 140.85028 * 16 14 13 26 26 C 1.53002 * 117.49980 * 209.48164 * 16 14 13 27 27 H 1.08995 * 109.47348 * 300.00524 * 1 2 3 28 28 H 1.09010 * 109.46946 * 60.00475 * 1 2 3 29 29 H 1.09002 * 109.47267 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47573 * 239.99743 * 2 1 3 31 31 H 1.09001 * 109.47149 * 120.00088 * 2 1 3 32 32 H 0.96993 * 120.00051 * 179.97438 * 8 7 5 33 33 H 0.97000 * 120.00422 * 276.75514 * 13 3 2 34 34 H 1.08003 * 120.02781 * 0.02776 * 19 18 17 35 35 H 1.08001 * 119.97658 * 180.22973 * 20 19 18 36 36 H 1.07998 * 119.98043 * 179.97438 * 23 21 20 37 37 H 1.07999 * 120.02082 * 180.02562 * 24 23 21 38 38 H 1.08998 * 117.49914 * 214.97202 * 25 16 14 39 39 H 1.08997 * 117.49902 * 0.02562 * 25 16 14 40 40 H 1.08999 * 117.49610 * 359.97438 * 26 16 14 41 41 H 1.08997 * 117.49951 * 144.99942 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5970 1.9845 0.8353 5 6 3.5406 1.4447 0.1389 6 1 4.1537 1.8865 -0.6326 7 6 4.1307 0.8828 1.2512 8 7 3.3842 0.3444 2.1905 9 14 5.9907 0.8862 1.4237 10 1 6.4204 2.1216 2.1268 11 1 6.4175 -0.3021 2.2055 12 1 6.6130 0.8417 0.0762 13 7 1.6651 2.0929 -1.2581 14 6 0.5585 2.8600 -1.3165 15 8 -0.1805 2.9322 -0.3575 16 6 0.2393 3.6278 -2.5733 17 8 1.2267 3.5605 -3.6041 18 6 2.2858 4.4060 -3.5003 19 6 2.4203 5.2167 -2.3827 20 6 3.4998 6.0722 -2.2769 21 6 4.4414 6.1277 -3.2893 22 17 5.7938 7.2081 -3.1569 23 6 4.3062 5.3237 -4.4071 24 6 3.2307 4.4634 -4.5143 25 6 -1.2272 3.7016 -3.0034 26 6 -0.5369 4.9377 -2.4230 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7994 -0.0512 2.9727 33 1 2.2134 1.9716 -2.0490 34 1 1.6836 5.1763 -1.5939 35 1 3.6068 6.7008 -1.4053 36 1 5.0419 5.3687 -5.1965 37 1 3.1257 3.8356 -5.3868 38 1 -1.4388 3.6989 -4.0726 39 1 -1.9614 3.1951 -2.3770 40 1 -0.8171 5.2438 -1.4151 41 1 -0.2945 5.7481 -3.1104 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354690984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:29 Heat of formation + Delta-G solvation = -46.628589 kcal Electronic energy + Delta-G solvation = -25655.526068 eV Core-core repulsion = 21947.859827 eV Total energy + Delta-G solvation = -3707.666242 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.99194 -40.34724 -38.89065 -37.47701 -37.07682 -35.79709 -34.29744 -32.78775 -32.12739 -30.62118 -29.12559 -26.04070 -24.74676 -24.22214 -23.53442 -23.16359 -21.67565 -21.07036 -19.89852 -18.44258 -18.08783 -17.47776 -17.27700 -16.90753 -16.37908 -16.05188 -15.59199 -15.46566 -15.25150 -15.09606 -14.64763 -14.52686 -14.24973 -14.05949 -13.88561 -13.48158 -13.30752 -13.21121 -12.94217 -12.72393 -12.56587 -12.54982 -12.19187 -12.16047 -12.04352 -12.02143 -11.79307 -11.64752 -11.26623 -11.16233 -10.74180 -10.52110 -10.13162 -9.71731 -9.18598 -8.18395 -6.34727 0.15809 0.21872 1.16636 1.39405 1.40436 1.42640 1.51416 1.80625 2.24880 2.44424 2.57562 2.79182 3.10624 3.47939 3.64849 3.72970 3.79980 3.87446 4.08715 4.27836 4.38147 4.45281 4.53756 4.55869 4.61391 4.71494 4.79932 4.87440 4.97597 5.02971 5.05700 5.21298 5.21857 5.23481 5.37133 5.50508 5.51951 5.57867 5.72440 5.90847 6.14540 6.16953 6.71834 6.86160 7.27634 7.44002 8.86377 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.005661 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.117699 B = 4945.143256 C = 7433.622536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.278 3.722 4 H 0.008 0.992 5 C -0.544 4.544 6 H 0.060 0.940 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.960 3.040 10 H -0.279 1.279 11 H -0.280 1.280 12 H -0.264 1.264 13 N -0.693 5.693 14 C 0.525 3.475 15 O -0.576 6.576 16 C -0.023 4.023 17 O -0.267 6.267 18 C 0.116 3.884 19 C -0.187 4.187 20 C -0.080 4.080 21 C -0.077 4.077 22 Cl -0.072 7.072 23 C -0.070 4.070 24 C -0.135 4.135 25 C -0.098 4.098 26 C -0.149 4.149 27 H 0.028 0.972 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.265 0.735 33 H 0.398 0.602 34 H 0.123 0.877 35 H 0.138 0.862 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.142 0.858 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 10.413 -15.792 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.026 0.974 5 C -0.583 4.583 6 H 0.079 0.921 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.785 3.215 10 H -0.205 1.205 11 H -0.205 1.205 12 H -0.189 1.189 13 N -0.340 5.340 14 C 0.311 3.689 15 O -0.457 6.457 16 C -0.066 4.066 17 O -0.181 6.181 18 C 0.071 3.929 19 C -0.206 4.206 20 C -0.099 4.099 21 C -0.104 4.104 22 Cl -0.043 7.043 23 C -0.088 4.088 24 C -0.153 4.153 25 C -0.136 4.136 26 C -0.187 4.187 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.232 0.768 34 H 0.141 0.859 35 H 0.156 0.844 36 H 0.183 0.817 37 H 0.181 0.819 38 H 0.160 0.840 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.699 10.305 -15.051 18.439 hybrid contribution 1.331 -0.071 0.719 1.515 sum -1.368 10.234 -14.331 17.663 Atomic orbital electron populations 1.21580 0.96805 0.99792 0.99861 1.21781 0.94004 0.98952 1.01442 1.18441 0.93572 0.89482 0.80967 0.97402 1.21511 0.91663 1.38911 1.06187 0.92143 1.25639 1.02719 0.94411 0.95100 1.70011 1.36763 1.38481 1.09711 0.85527 0.79882 0.77591 0.78502 1.20513 1.20521 1.18875 1.46157 1.25277 1.48038 1.14499 1.20000 0.81364 0.79624 0.87903 1.90677 1.50087 1.66746 1.38219 1.22214 0.89957 1.05595 0.88814 1.86130 1.30420 1.56470 1.45037 1.19362 0.88620 0.90278 0.94639 1.21273 1.00831 0.99822 0.98664 1.20970 0.92492 0.98241 0.98170 1.20910 0.92422 0.98857 0.98187 1.98353 1.44318 1.63500 1.98127 1.21118 0.97615 0.93254 0.96829 1.20633 0.93440 1.01941 0.99297 1.23532 0.87101 0.98383 1.04535 1.23665 0.99690 0.90687 1.04649 0.95310 0.94229 0.92831 0.94166 0.90661 0.92521 0.76829 0.85939 0.84442 0.81722 0.81924 0.83969 0.86655 0.87433 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.86 71.98 0.64 -4.70 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.26 2.19 44.24 0.10 14.36 16 4 H 0.01 0.49 7.30 -2.39 -0.02 0.47 16 5 C -0.54 -29.28 8.77 25.60 0.22 -29.06 16 6 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 7 C 0.02 1.18 5.29 84.66 0.45 1.63 16 8 N -0.91 -51.90 11.29 21.45 0.24 -51.65 16 9 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 13 N -0.69 -29.41 4.73 -446.10 -2.11 -31.52 16 14 C 0.53 20.57 5.58 87.66 0.49 21.06 16 15 O -0.58 -26.25 14.75 -3.03 -0.04 -26.29 16 16 C -0.02 -0.67 1.77 -11.54 -0.02 -0.69 16 17 O -0.27 -7.28 9.47 -92.67 -0.88 -8.16 16 18 C 0.12 3.07 6.39 22.50 0.14 3.21 16 19 C -0.19 -5.33 8.49 22.36 0.19 -5.15 16 20 C -0.08 -2.13 9.82 22.28 0.22 -1.91 16 21 C -0.08 -1.85 6.32 22.33 0.14 -1.71 16 22 Cl -0.07 -1.60 28.95 -2.72 -0.08 -1.68 16 23 C -0.07 -1.44 9.82 22.28 0.22 -1.22 16 24 C -0.13 -2.92 9.99 22.36 0.22 -2.69 16 25 C -0.10 -2.09 10.05 30.60 0.31 -1.78 16 26 C -0.15 -3.36 7.97 30.60 0.24 -3.12 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.64 6.49 -2.38 -0.02 1.62 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 31 H 0.08 4.10 5.94 -2.39 -0.01 4.08 16 32 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.40 15.72 7.81 -92.71 -0.72 15.00 16 34 H 0.12 3.84 5.34 -2.91 -0.02 3.82 16 35 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 38 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.12 2.58 8.13 -2.39 -0.02 2.56 16 40 H 0.11 2.66 7.97 -2.39 -0.02 2.64 16 41 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -64.02 356.80 3.22 -60.79 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 0.33 Total: 31.19 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 3.73 Total: -17.57 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -1.87 Total: -83.17 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.92 Total: -34.45 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -64.02 3.22 -60.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354690984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.166 kcal (2) G-P(sol) polarization free energy of solvation -64.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds