Wall clock time and date at job start Tue Mar 31 2020 14:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47378 * 2 1 4 4 H 1.09003 * 109.46914 * 305.00131 * 3 2 1 5 5 C 1.50696 * 109.47172 * 185.00243 * 3 2 1 6 6 H 1.08003 * 119.99889 * 239.99979 * 5 3 2 7 7 C 1.37874 * 120.00313 * 59.99745 * 5 3 2 8 8 N 1.31510 * 119.99890 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00069 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47043 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46840 * 120.00439 * 9 7 5 12 12 H 1.48497 * 109.47256 * 240.00072 * 9 7 5 13 13 N 1.46494 * 109.47101 * 64.99837 * 3 2 1 14 14 C 1.34772 * 120.00228 * 275.00345 * 13 3 2 15 15 O 1.21285 * 120.00062 * 4.38315 * 14 13 3 16 16 C 1.50701 * 120.00191 * 184.38143 * 14 13 3 17 17 H 1.09007 * 109.43602 * 25.05126 * 16 14 13 18 18 C 1.53073 * 109.43709 * 144.96181 * 16 14 13 19 19 C 1.53407 * 108.29746 * 168.31622 * 18 16 14 20 20 O 1.42825 * 108.38961 * 295.31277 * 19 18 16 21 21 C 1.35867 * 117.86789 * 49.16611 * 20 19 18 22 22 C 1.39135 * 118.48957 * 162.87997 * 21 20 19 23 23 C 1.37964 * 120.23641 * 179.68855 * 22 21 20 24 24 C 1.38387 * 119.94231 * 359.97438 * 23 22 21 25 25 Cl 1.73608 * 120.01997 * 180.02562 * 24 23 22 26 26 C 1.38202 * 119.95721 * 0.09336 * 24 23 22 27 27 C 1.38366 * 121.79662 * 343.01460 * 21 20 19 28 28 H 1.08999 * 109.47063 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47275 * 300.00191 * 1 2 3 30 30 H 1.08998 * 109.47108 * 59.99761 * 1 2 3 31 31 H 1.08999 * 109.47275 * 239.99809 * 2 1 3 32 32 H 1.09001 * 109.47364 * 119.99784 * 2 1 3 33 33 H 0.97009 * 120.00147 * 179.97438 * 8 7 5 34 34 H 0.97006 * 119.99949 * 95.00208 * 13 3 2 35 35 H 1.09005 * 109.69938 * 48.61974 * 18 16 14 36 36 H 1.08995 * 109.70553 * 288.02163 * 18 16 14 37 37 H 1.08999 * 109.67747 * 175.59312 * 19 18 16 38 38 H 1.08993 * 109.68006 * 55.04479 * 19 18 16 39 39 H 1.08001 * 119.88145 * 359.71192 * 22 21 20 40 40 H 1.08005 * 120.03128 * 179.97438 * 23 22 21 41 41 H 1.07999 * 119.84426 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5987 1.5462 -0.1943 11 1 6.4970 -0.5176 -1.4631 12 1 6.3990 1.6166 -2.6102 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6644 1.3669 15 8 -0.3685 2.5637 0.4642 16 6 0.0727 3.4234 2.6174 17 1 0.9811 3.7909 3.0948 18 6 -0.8255 4.6078 2.2519 19 6 -1.4150 5.1825 3.5463 20 8 -2.2616 4.1936 4.1339 21 6 -1.7676 2.9354 4.2717 22 6 -2.4081 2.0631 5.1462 23 6 -1.9409 0.7752 5.3090 24 6 -0.8317 0.3480 4.6003 25 17 -0.2425 -1.2724 4.8031 26 6 -0.1925 1.2126 3.7319 27 6 -0.6530 2.5090 3.5715 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0605 -2.9503 34 1 2.2720 2.1232 1.9978 35 1 -1.6310 4.2705 1.5995 36 1 -0.2372 5.3725 1.7449 37 1 -1.9968 6.0759 3.3197 38 1 -0.6098 5.4336 4.2366 39 1 -3.2743 2.3952 5.6992 40 1 -2.4403 0.1009 5.9890 41 1 0.6727 0.8772 3.1794 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358076217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:23 Heat of formation + Delta-G solvation = -85.473599 kcal Electronic energy + Delta-G solvation = -25821.968832 eV Core-core repulsion = 22112.618144 eV Total energy + Delta-G solvation = -3709.350688 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.15548 -40.41018 -38.82339 -37.17939 -37.04759 -35.28533 -34.26901 -32.73898 -31.69574 -31.16035 -29.13332 -27.31181 -25.13369 -24.70773 -23.87408 -22.36065 -21.29092 -20.84764 -19.24598 -18.66761 -17.97547 -17.65948 -17.27909 -17.14420 -16.32049 -16.18484 -15.86140 -15.41805 -15.07670 -14.89649 -14.65955 -14.57358 -14.51530 -13.87525 -13.64462 -13.55358 -13.44867 -13.19578 -13.00210 -12.88451 -12.72346 -12.41043 -12.29890 -12.16379 -12.07861 -11.88624 -11.73918 -11.58692 -11.46544 -11.05296 -10.71608 -10.53658 -9.94647 -9.65181 -9.13181 -8.16651 -6.33834 0.08991 0.15530 1.16975 1.43140 1.44793 1.55982 1.75135 2.21000 2.34837 2.46588 2.69465 3.13223 3.42955 3.54364 3.64131 3.89694 4.00767 4.08443 4.23029 4.33588 4.36395 4.43184 4.47470 4.56135 4.66559 4.75579 4.79054 4.87975 4.91444 5.06000 5.11275 5.19563 5.20994 5.25457 5.42651 5.52172 5.54693 5.60909 5.77650 5.90668 6.15906 6.32949 6.74245 6.94426 7.32836 7.53638 8.88805 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.004348 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.050584 B = 6437.966094 C = 7659.484842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.118 4.118 3 C 0.281 3.719 4 H -0.001 1.001 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.703 5.703 14 C 0.511 3.489 15 O -0.577 6.577 16 C -0.060 4.060 17 H 0.126 0.874 18 C -0.145 4.145 19 C 0.065 3.935 20 O -0.318 6.318 21 C 0.139 3.861 22 C -0.136 4.136 23 C -0.070 4.070 24 C -0.076 4.076 25 Cl -0.074 7.074 26 C -0.087 4.087 27 C -0.146 4.146 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.401 0.599 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.141 0.859 38 H 0.089 0.911 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.702 6.487 18.027 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.157 4.157 3 C 0.178 3.822 4 H 0.017 0.983 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.352 5.352 14 C 0.297 3.703 15 O -0.458 6.458 16 C -0.082 4.082 17 H 0.143 0.857 18 C -0.183 4.183 19 C -0.009 4.009 20 O -0.232 6.232 21 C 0.093 3.907 22 C -0.154 4.154 23 C -0.088 4.088 24 C -0.103 4.103 25 Cl -0.045 7.045 26 C -0.106 4.106 27 C -0.147 4.147 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.159 0.841 38 H 0.107 0.893 39 H 0.185 0.815 40 H 0.184 0.816 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.354 6.269 17.256 20.605 hybrid contribution 1.618 -0.564 -0.747 1.869 sum -7.736 5.705 16.509 19.103 Atomic orbital electron populations 1.21695 0.97157 0.98637 1.00412 1.21757 0.93468 0.99380 1.01059 1.18347 0.93616 0.89002 0.81235 0.98338 1.21590 0.91350 1.38801 1.06603 0.90979 1.25738 1.03117 0.94390 0.95079 1.70058 1.36953 1.38436 1.09880 0.85359 0.79368 0.77738 0.78242 1.18372 1.20707 1.20988 1.46375 1.15441 1.55870 1.17469 1.20681 0.81797 0.79240 0.88596 1.90663 1.50232 1.61734 1.43144 1.20252 1.00923 0.95112 0.91878 0.85655 1.22157 0.99970 0.96712 0.99417 1.23293 0.95411 0.89725 0.92462 1.85981 1.42906 1.16423 1.77887 1.18870 0.91868 0.85939 0.94000 1.20834 1.02844 0.92348 0.99387 1.21130 0.93631 0.95850 0.98195 1.20838 0.99457 0.87150 1.02843 1.98366 1.88259 1.21190 1.96663 1.20957 1.00117 0.92406 0.97079 1.19360 0.99249 0.95267 1.00863 0.94400 0.93451 0.95669 0.91162 0.94384 0.92664 0.76364 0.91514 0.87836 0.84118 0.89258 0.81470 0.81607 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.47 71.98 0.61 -5.08 16 2 C -0.12 -5.86 5.45 30.59 0.17 -5.69 16 3 C 0.28 14.20 2.24 44.25 0.10 14.29 16 4 H 0.00 -0.08 7.64 -2.39 -0.02 -0.09 16 5 C -0.55 -28.33 8.73 25.60 0.22 -28.11 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -52.15 11.29 21.45 0.24 -51.91 16 9 Si 0.97 41.75 29.54 68.60 2.03 43.78 16 10 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 13 N -0.70 -28.09 4.28 -446.11 -1.91 -30.00 16 14 C 0.51 19.38 4.55 87.66 0.40 19.77 16 15 O -0.58 -26.84 12.86 -3.04 -0.04 -26.88 16 16 C -0.06 -1.64 2.69 -12.24 -0.03 -1.68 16 17 H 0.13 2.70 8.13 -2.38 -0.02 2.68 16 18 C -0.14 -3.34 5.35 30.75 0.16 -3.18 16 19 C 0.07 1.05 7.03 72.12 0.51 1.56 16 20 O -0.32 -6.84 10.27 -92.05 -0.95 -7.79 16 21 C 0.14 3.33 6.47 22.52 0.15 3.48 16 22 C -0.14 -2.69 9.93 22.42 0.22 -2.47 16 23 C -0.07 -1.41 9.83 22.24 0.22 -1.19 16 24 C -0.08 -1.96 6.32 22.30 0.14 -1.82 16 25 Cl -0.07 -1.89 28.96 -2.72 -0.08 -1.97 16 26 C -0.09 -2.51 8.88 22.33 0.20 -2.31 16 27 C -0.15 -3.96 5.44 -19.75 -0.11 -4.07 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 2.15 5.54 -2.39 -0.01 2.13 16 30 H 0.02 1.25 7.80 -2.39 -0.02 1.23 16 31 H 0.07 3.93 5.95 -2.39 -0.01 3.91 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 34 H 0.40 13.74 8.48 -92.70 -0.79 12.95 16 35 H 0.07 1.96 7.46 -2.38 -0.02 1.94 16 36 H 0.10 2.07 8.14 -2.39 -0.02 2.06 16 37 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 41 H 0.12 3.96 6.71 -2.91 -0.02 3.94 16 Total: -1.00 -67.29 345.76 2.98 -64.31 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.28 Total: 25.59 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 3.40 Total: -15.14 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -1.67 Total: -81.90 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.98 Total: -34.67 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.08 Total: -1.97 kcal Total: -67.29 2.98 -64.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358076217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.160 kcal (2) G-P(sol) polarization free energy of solvation -67.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds