Wall clock time and date at job start Tue Mar 31 2020 14:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47053 * 2 1 4 4 H 1.08996 * 109.47277 * 55.00599 * 3 2 1 5 5 C 1.50701 * 109.47153 * 175.00124 * 3 2 1 6 6 H 1.08002 * 119.99746 * 119.99663 * 5 3 2 7 7 C 1.37875 * 120.00357 * 300.00815 * 5 3 2 8 8 N 1.31515 * 119.99787 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00312 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47232 * 59.99364 * 9 7 5 11 11 H 1.48506 * 109.47153 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46825 * 299.99536 * 9 7 5 13 13 N 1.46493 * 109.47498 * 295.00313 * 3 2 1 14 14 C 1.34784 * 119.99972 * 85.00108 * 13 3 2 15 15 O 1.21281 * 119.99741 * 5.28428 * 14 13 3 16 16 C 1.50702 * 119.99792 * 185.28709 * 14 13 3 17 17 H 1.08996 * 109.44105 * 325.32122 * 16 14 13 18 18 C 1.53066 * 109.40113 * 205.42181 * 16 14 13 19 19 C 1.53406 * 108.29338 * 191.73201 * 18 16 14 20 20 O 1.42821 * 108.39323 * 64.71883 * 19 18 16 21 21 C 1.35869 * 117.87050 * 310.91223 * 20 19 18 22 22 C 1.39142 * 118.48035 * 196.99466 * 21 20 19 23 23 C 1.37972 * 120.23335 * 180.20309 * 22 21 20 24 24 C 1.38390 * 119.94464 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 120.02380 * 179.97438 * 24 23 22 26 26 C 1.38206 * 119.95463 * 359.92049 * 24 23 22 27 27 C 1.38364 * 121.80463 * 17.06079 * 21 20 19 28 28 H 1.09004 * 109.46875 * 299.99359 * 1 2 3 29 29 H 1.08992 * 109.47535 * 59.99442 * 1 2 3 30 30 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46441 * 240.00479 * 2 1 3 32 32 H 1.09002 * 109.47014 * 120.00574 * 2 1 3 33 33 H 0.96999 * 120.00172 * 180.02562 * 8 7 5 34 34 H 0.97002 * 120.00489 * 264.99770 * 13 3 2 35 35 H 1.08995 * 109.70721 * 72.01949 * 18 16 14 36 36 H 1.09007 * 109.69064 * 311.42166 * 18 16 14 37 37 H 1.09000 * 109.67779 * 304.99219 * 19 18 16 38 38 H 1.08999 * 109.67803 * 184.44752 * 19 18 16 39 39 H 1.07998 * 119.88759 * 0.16981 * 22 21 20 40 40 H 1.07995 * 120.02544 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.84398 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8888 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 3.4063 0.3372 2.1731 9 14 6.0051 0.8799 1.3809 10 1 6.5006 2.2798 1.3806 11 1 6.3980 0.2164 2.6501 12 1 6.5966 0.1452 0.2340 13 7 1.6524 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3667 15 8 -0.3026 2.7172 -0.4055 16 6 -0.0094 3.2328 -2.6898 17 1 0.8488 3.6615 -3.2072 18 6 -1.0560 4.3235 -2.4489 19 6 -1.7028 4.6758 -3.7946 20 8 -2.4101 3.5292 -4.2686 21 6 -1.7581 2.3371 -4.2717 22 6 -2.2747 1.3002 -5.0424 23 6 -1.6441 0.0734 -5.0688 24 6 -0.4938 -0.1282 -4.3261 25 17 0.3010 -1.6712 -4.3573 26 6 0.0223 0.9002 -3.5605 27 6 -0.6060 2.1342 -3.5327 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8294 -0.0607 2.9500 34 1 2.2718 2.1233 -1.9977 35 1 -0.5758 5.2074 -2.0293 36 1 -1.8172 3.9564 -1.7603 37 1 -0.9303 4.9530 -4.5118 38 1 -2.3964 5.5062 -3.6622 39 1 -3.1729 1.4561 -5.6216 40 1 -2.0478 -0.7289 -5.6684 41 1 0.9203 0.7410 -2.9820 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358076218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:26 Heat of formation + Delta-G solvation = -68.166849 kcal Electronic energy + Delta-G solvation = -25970.398166 eV Core-core repulsion = 22261.797955 eV Total energy + Delta-G solvation = -3708.600211 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09463 -38.92826 -37.86111 -36.13651 -35.28583 -34.08880 -32.39860 -30.96478 -30.67166 -30.14292 -27.35323 -26.06948 -23.87721 -23.22442 -22.63157 -20.90343 -19.74146 -19.44189 -18.06144 -17.21386 -16.90868 -16.47665 -15.82527 -15.40620 -15.21142 -14.66985 -14.41012 -14.21209 -14.00361 -13.59515 -13.33777 -13.31617 -12.90974 -12.68067 -12.50330 -12.08876 -11.96922 -11.59398 -11.33139 -11.28736 -11.18282 -11.01099 -10.96023 -10.84818 -10.71936 -10.49163 -10.34147 -10.18804 -9.66659 -9.30711 -9.07402 -8.81032 -8.51527 -8.13528 -7.88096 -6.13763 -4.23530 1.08004 1.17583 2.21787 3.10823 3.22693 3.24578 3.30035 3.30762 3.48328 3.99396 4.34450 4.49944 4.55415 4.61024 4.91150 5.01679 5.03926 5.13373 5.17681 5.29302 5.33883 5.37531 5.62796 5.74433 5.84565 5.87690 6.12651 6.20204 6.23342 6.38570 6.43586 6.47821 6.64146 7.02234 7.17074 7.24816 7.33098 7.39595 7.58907 7.69108 7.87552 8.16044 8.58850 8.74322 9.04336 9.43633 10.91398 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.004575 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.525625 B = 6118.563385 C = 7383.653813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.708 5.708 14 C 0.513 3.487 15 O -0.539 6.539 16 C -0.070 4.070 17 H 0.101 0.899 18 C -0.145 4.145 19 C 0.062 3.938 20 O -0.313 6.313 21 C 0.144 3.856 22 C -0.142 4.142 23 C -0.078 4.078 24 C -0.064 4.064 25 Cl -0.068 7.068 26 C -0.069 4.069 27 C -0.134 4.134 28 H 0.048 0.952 29 H 0.038 0.962 30 H 0.024 0.976 31 H 0.032 0.968 32 H 0.100 0.900 33 H 0.265 0.735 34 H 0.388 0.612 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.733 3.834 -15.531 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.356 5.356 14 C 0.297 3.703 15 O -0.417 6.417 16 C -0.091 4.091 17 H 0.119 0.881 18 C -0.182 4.182 19 C -0.012 4.012 20 O -0.227 6.227 21 C 0.098 3.902 22 C -0.161 4.161 23 C -0.097 4.097 24 C -0.091 4.091 25 Cl -0.039 7.039 26 C -0.088 4.088 27 C -0.135 4.135 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.347 3.652 -14.671 17.775 hybrid contribution 1.668 -0.179 -0.091 1.680 sum -7.678 3.473 -14.762 16.998 Atomic orbital electron populations 1.21844 0.98471 0.98347 1.01030 1.21927 0.92456 0.99693 1.02409 1.18808 0.94264 0.89127 0.80932 0.93177 1.21170 0.90642 1.39223 1.06327 0.92177 1.24867 0.98524 0.94762 0.95376 1.69880 1.35220 1.37447 1.09306 0.86534 0.84947 0.78289 0.77484 1.20224 1.21134 1.20148 1.46632 1.14377 1.55811 1.18735 1.19900 0.82822 0.78877 0.88687 1.90672 1.53884 1.57901 1.39227 1.20271 0.99311 0.94518 0.95015 0.88124 1.22131 0.99401 0.98812 0.97900 1.23049 0.97036 0.86260 0.94895 1.85980 1.41067 1.14620 1.81036 1.18671 0.91091 0.86289 0.94105 1.20458 1.02449 0.91613 1.01544 1.20808 0.93611 0.97009 0.98245 1.20693 0.97053 0.88212 1.03126 1.98373 1.79721 1.28047 1.97788 1.21154 1.00411 0.90598 0.96588 1.19348 0.97507 0.95854 1.00826 0.93321 0.94275 0.95650 0.94934 0.88227 0.92491 0.77969 0.89200 0.88585 0.91613 0.87073 0.84333 0.84427 0.83599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.59 37.16 0.32 -2.79 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.57 2.25 -69.09 -0.16 6.41 16 4 H 0.05 1.43 7.51 -51.93 -0.39 1.04 16 5 C -0.54 -13.75 8.73 -34.44 -0.30 -14.05 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.37 11.29 55.43 0.63 -23.74 16 9 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.71 -13.90 3.80 -54.94 -0.21 -14.11 16 14 C 0.51 9.62 4.55 -10.98 -0.05 9.57 16 15 O -0.54 -12.11 13.43 5.56 0.07 -12.04 16 16 C -0.07 -0.98 2.71 -92.85 -0.25 -1.23 16 17 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 18 C -0.14 -1.78 5.24 -26.49 -0.14 -1.92 16 19 C 0.06 0.60 7.03 37.37 0.26 0.87 16 20 O -0.31 -3.85 10.27 -19.33 -0.20 -4.05 16 21 C 0.14 1.91 6.47 -39.20 -0.25 1.65 16 22 C -0.14 -1.65 9.94 -39.34 -0.39 -2.04 16 23 C -0.08 -0.91 9.83 -39.62 -0.39 -1.30 16 24 C -0.06 -0.88 6.32 -39.54 -0.25 -1.13 16 25 Cl -0.07 -0.93 28.96 -51.86 -1.50 -2.43 16 26 C -0.07 -1.03 8.12 -39.49 -0.32 -1.35 16 27 C -0.13 -1.91 5.43 -104.44 -0.57 -2.48 16 28 H 0.05 1.16 7.93 -51.93 -0.41 0.75 16 29 H 0.04 0.84 4.98 -51.93 -0.26 0.58 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.39 6.66 8.20 -40.82 -0.33 6.33 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.10 1.42 7.44 -51.93 -0.39 1.03 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.15 2.37 6.07 -52.49 -0.32 2.05 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -29.86 343.63 -9.11 -38.97 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.33 Total: 8.12 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -2.73 Total: -11.24 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.42 Total: -37.86 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.12 Total: -16.08 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.86 -9.11 -38.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358076218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.194 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds