Wall clock time and date at job start Tue Mar 31 2020 14:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47053 * 2 1 4 4 H 1.08996 * 109.47277 * 55.00599 * 3 2 1 5 5 C 1.50701 * 109.47153 * 175.00124 * 3 2 1 6 6 H 1.08002 * 119.99746 * 119.99663 * 5 3 2 7 7 C 1.37875 * 120.00357 * 300.00815 * 5 3 2 8 8 N 1.31515 * 119.99787 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00312 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47232 * 59.99364 * 9 7 5 11 11 H 1.48506 * 109.47153 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46825 * 299.99536 * 9 7 5 13 13 N 1.46493 * 109.47498 * 295.00313 * 3 2 1 14 14 C 1.34784 * 119.99972 * 85.00108 * 13 3 2 15 15 O 1.21281 * 119.99741 * 5.28428 * 14 13 3 16 16 C 1.50702 * 119.99792 * 185.28709 * 14 13 3 17 17 H 1.08996 * 109.44105 * 325.32122 * 16 14 13 18 18 C 1.53066 * 109.40113 * 205.42181 * 16 14 13 19 19 C 1.53406 * 108.29338 * 191.73201 * 18 16 14 20 20 O 1.42821 * 108.39323 * 64.71883 * 19 18 16 21 21 C 1.35869 * 117.87050 * 310.91223 * 20 19 18 22 22 C 1.39142 * 118.48035 * 196.99466 * 21 20 19 23 23 C 1.37972 * 120.23335 * 180.20309 * 22 21 20 24 24 C 1.38390 * 119.94464 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 120.02380 * 179.97438 * 24 23 22 26 26 C 1.38206 * 119.95463 * 359.92049 * 24 23 22 27 27 C 1.38364 * 121.80463 * 17.06079 * 21 20 19 28 28 H 1.09004 * 109.46875 * 299.99359 * 1 2 3 29 29 H 1.08992 * 109.47535 * 59.99442 * 1 2 3 30 30 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46441 * 240.00479 * 2 1 3 32 32 H 1.09002 * 109.47014 * 120.00574 * 2 1 3 33 33 H 0.96999 * 120.00172 * 180.02562 * 8 7 5 34 34 H 0.97002 * 120.00489 * 264.99770 * 13 3 2 35 35 H 1.08995 * 109.70721 * 72.01949 * 18 16 14 36 36 H 1.09007 * 109.69064 * 311.42166 * 18 16 14 37 37 H 1.09000 * 109.67779 * 304.99219 * 19 18 16 38 38 H 1.08999 * 109.67803 * 184.44752 * 19 18 16 39 39 H 1.07998 * 119.88759 * 0.16981 * 22 21 20 40 40 H 1.07995 * 120.02544 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.84398 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8888 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 3.4063 0.3372 2.1731 9 14 6.0051 0.8799 1.3809 10 1 6.5006 2.2798 1.3806 11 1 6.3980 0.2164 2.6501 12 1 6.5966 0.1452 0.2340 13 7 1.6524 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3667 15 8 -0.3026 2.7172 -0.4055 16 6 -0.0094 3.2328 -2.6898 17 1 0.8488 3.6615 -3.2072 18 6 -1.0560 4.3235 -2.4489 19 6 -1.7028 4.6758 -3.7946 20 8 -2.4101 3.5292 -4.2686 21 6 -1.7581 2.3371 -4.2717 22 6 -2.2747 1.3002 -5.0424 23 6 -1.6441 0.0734 -5.0688 24 6 -0.4938 -0.1282 -4.3261 25 17 0.3010 -1.6712 -4.3573 26 6 0.0223 0.9002 -3.5605 27 6 -0.6060 2.1342 -3.5327 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8294 -0.0607 2.9500 34 1 2.2718 2.1233 -1.9977 35 1 -0.5758 5.2074 -2.0293 36 1 -1.8172 3.9564 -1.7603 37 1 -0.9303 4.9530 -4.5118 38 1 -2.3964 5.5062 -3.6622 39 1 -3.1729 1.4561 -5.6216 40 1 -2.0478 -0.7289 -5.6684 41 1 0.9203 0.7410 -2.9820 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358076218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:25 Heat of formation + Delta-G solvation = -85.415680 kcal Electronic energy + Delta-G solvation = -25971.146132 eV Core-core repulsion = 22261.797955 eV Total energy + Delta-G solvation = -3709.348176 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.16835 -40.39525 -38.82028 -37.16150 -37.07191 -35.28600 -34.27591 -32.74097 -31.67301 -31.14560 -29.14989 -27.30967 -25.13857 -24.68855 -23.84546 -22.34563 -21.33350 -20.83420 -19.24319 -18.64133 -17.98037 -17.65909 -17.31485 -17.12650 -16.31311 -16.14375 -15.87449 -15.44043 -15.04129 -14.86563 -14.62807 -14.56331 -14.52971 -13.88004 -13.73166 -13.53615 -13.42064 -13.19259 -12.99106 -12.91495 -12.66922 -12.39316 -12.29408 -12.18503 -12.07498 -11.88939 -11.73490 -11.62665 -11.45015 -11.06793 -10.75212 -10.52897 -9.93281 -9.65667 -9.12309 -8.15869 -6.33120 0.09322 0.16735 1.19037 1.44477 1.45713 1.53420 1.74699 2.21981 2.34925 2.47542 2.69036 3.13695 3.44446 3.51898 3.65111 3.90652 4.01594 4.09442 4.23975 4.34325 4.37125 4.43856 4.46007 4.53243 4.67152 4.73395 4.80577 4.89421 4.92239 5.04707 5.12886 5.20669 5.22525 5.23505 5.40404 5.52876 5.54499 5.60921 5.77583 5.90297 6.16112 6.33535 6.74274 6.93525 7.33043 7.53070 8.89102 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.004575 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.525625 B = 6118.563385 C = 7383.653813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.115 4.115 3 C 0.281 3.719 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.704 5.704 14 C 0.512 3.488 15 O -0.581 6.581 16 C -0.061 4.061 17 H 0.128 0.872 18 C -0.143 4.143 19 C 0.065 3.935 20 O -0.318 6.318 21 C 0.140 3.860 22 C -0.136 4.136 23 C -0.070 4.070 24 C -0.077 4.077 25 Cl -0.074 7.074 26 C -0.087 4.087 27 C -0.148 4.148 28 H 0.023 0.977 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.264 0.736 34 H 0.401 0.599 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 4.636 -18.277 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.154 4.154 3 C 0.177 3.823 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.352 5.352 14 C 0.299 3.701 15 O -0.462 6.462 16 C -0.082 4.082 17 H 0.146 0.854 18 C -0.181 4.181 19 C -0.009 4.009 20 O -0.232 6.232 21 C 0.094 3.906 22 C -0.155 4.155 23 C -0.088 4.088 24 C -0.103 4.103 25 Cl -0.045 7.045 26 C -0.106 4.106 27 C -0.150 4.150 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.236 0.764 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.158 0.842 39 H 0.185 0.815 40 H 0.183 0.817 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.567 4.473 -17.461 20.407 hybrid contribution 1.665 -0.399 0.760 1.873 sum -7.902 4.073 -16.702 18.920 Atomic orbital electron populations 1.21673 0.97363 0.99035 1.00094 1.21732 0.93299 0.99231 1.01180 1.18335 0.93610 0.88942 0.81388 0.98269 1.21529 0.91414 1.38957 1.06650 0.91078 1.25725 1.03071 0.94388 0.95058 1.70039 1.37065 1.38320 1.09831 0.85478 0.79410 0.78449 0.77483 1.19598 1.21309 1.19067 1.46384 1.15411 1.55831 1.17607 1.20711 0.81656 0.77680 0.90075 1.90654 1.54816 1.59349 1.41340 1.20263 1.00892 0.95029 0.92033 0.85401 1.22137 0.98286 0.98468 0.99239 1.23300 0.98226 0.85998 0.93410 1.85980 1.41474 1.14821 1.80942 1.18864 0.90501 0.87230 0.94036 1.20827 1.02924 0.90869 1.00862 1.21133 0.92428 0.97844 0.97392 1.20848 0.97941 0.87769 1.03781 1.98367 1.80005 1.28313 1.97833 1.21065 1.00405 0.91612 0.97510 1.19345 0.98381 0.95574 1.01652 0.95746 0.93614 0.94006 0.94229 0.91094 0.92656 0.76354 0.87856 0.91580 0.89258 0.84154 0.81502 0.81672 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.59 71.98 0.62 -5.11 16 2 C -0.12 -5.70 5.45 30.59 0.17 -5.54 16 3 C 0.28 14.18 2.25 44.25 0.10 14.28 16 4 H 0.00 -0.03 7.51 -2.39 -0.02 -0.05 16 5 C -0.55 -28.57 8.73 25.60 0.22 -28.34 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.91 -52.23 11.29 21.45 0.24 -51.98 16 9 Si 0.97 41.91 29.54 68.60 2.03 43.94 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 13 N -0.70 -28.19 3.80 -446.11 -1.70 -29.88 16 14 C 0.51 19.51 4.55 87.66 0.40 19.91 16 15 O -0.58 -27.19 13.43 -3.03 -0.04 -27.23 16 16 C -0.06 -1.66 2.71 -12.24 -0.03 -1.69 16 17 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 18 C -0.14 -3.32 5.24 30.75 0.16 -3.16 16 19 C 0.06 1.04 7.03 72.12 0.51 1.55 16 20 O -0.32 -6.86 10.27 -92.08 -0.95 -7.80 16 21 C 0.14 3.36 6.47 22.52 0.15 3.50 16 22 C -0.14 -2.73 9.94 22.42 0.22 -2.51 16 23 C -0.07 -1.43 9.83 22.24 0.22 -1.21 16 24 C -0.08 -2.01 6.32 22.30 0.14 -1.87 16 25 Cl -0.07 -1.96 28.96 -2.72 -0.08 -2.04 16 26 C -0.09 -2.55 8.12 22.33 0.18 -2.37 16 27 C -0.15 -4.03 5.43 -19.75 -0.11 -4.14 16 28 H 0.02 1.20 7.93 -2.38 -0.02 1.18 16 29 H 0.04 2.02 4.98 -2.39 -0.01 2.01 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 3.94 5.95 -2.39 -0.01 3.93 16 33 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.40 13.79 8.20 -92.71 -0.76 13.03 16 35 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 1.95 7.44 -2.38 -0.02 1.93 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.13 4.15 6.07 -2.91 -0.02 4.13 16 Total: -1.00 -67.48 343.63 3.20 -64.28 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.31 Total: 26.01 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 3.39 Total: -15.29 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -1.45 Total: -81.87 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.99 Total: -35.03 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -67.48 3.20 -64.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358076218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.138 kcal (2) G-P(sol) polarization free energy of solvation -67.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds