Wall clock time and date at job start Tue Mar 31 2020 14:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47309 * 2 1 4 4 H 1.09002 * 109.46762 * 54.99945 * 3 2 1 5 5 C 1.50703 * 109.47360 * 174.99666 * 3 2 1 6 6 H 1.08000 * 119.99490 * 119.99834 * 5 3 2 7 7 C 1.37876 * 120.00176 * 300.00449 * 5 3 2 8 8 N 1.31510 * 120.00180 * 179.97438 * 7 5 3 9 9 Si 1.86807 * 119.99944 * 359.97438 * 7 5 3 10 10 H 1.48492 * 109.46958 * 90.00172 * 9 7 5 11 11 H 1.48496 * 109.46679 * 210.00196 * 9 7 5 12 12 H 1.48496 * 109.46796 * 329.99957 * 9 7 5 13 13 N 1.46494 * 109.47134 * 295.00173 * 3 2 1 14 14 C 1.34772 * 120.00228 * 84.99851 * 13 3 2 15 15 O 1.21284 * 120.00219 * 5.25235 * 14 13 3 16 16 C 1.50699 * 120.00324 * 185.25043 * 14 13 3 17 17 H 1.08996 * 109.43787 * 25.04787 * 16 14 13 18 18 C 1.53071 * 109.43972 * 144.96147 * 16 14 13 19 19 C 1.53411 * 108.29928 * 168.31566 * 18 16 14 20 20 O 1.42822 * 108.38739 * 295.31528 * 19 18 16 21 21 C 1.35872 * 117.86975 * 49.16447 * 20 19 18 22 22 C 1.39143 * 118.48729 * 162.87833 * 21 20 19 23 23 C 1.37958 * 120.23424 * 179.68597 * 22 21 20 24 24 C 1.38396 * 119.94428 * 359.97438 * 23 22 21 25 25 Cl 1.73605 * 120.02189 * 180.02562 * 24 23 22 26 26 C 1.38198 * 119.95329 * 0.09055 * 24 23 22 27 27 C 1.38369 * 121.79904 * 343.01286 * 21 20 19 28 28 H 1.09000 * 109.47348 * 300.00145 * 1 2 3 29 29 H 1.09006 * 109.46833 * 59.99652 * 1 2 3 30 30 H 1.08996 * 109.46997 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47348 * 239.99855 * 2 1 3 32 32 H 1.08998 * 109.47280 * 119.99874 * 2 1 3 33 33 H 0.97000 * 120.00499 * 179.97438 * 8 7 5 34 34 H 0.97006 * 119.99949 * 264.99714 * 13 3 2 35 35 H 1.08998 * 109.69570 * 48.61770 * 18 16 14 36 36 H 1.08997 * 109.70174 * 288.01779 * 18 16 14 37 37 H 1.08998 * 109.67955 * 175.59388 * 19 18 16 38 38 H 1.08999 * 109.67537 * 55.04033 * 19 18 16 39 39 H 1.08004 * 119.88264 * 359.71772 * 22 21 20 40 40 H 1.07999 * 120.02819 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.84419 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8795 1.3359 9 14 3.0963 0.1099 2.5708 10 1 2.8745 -1.3260 2.2646 11 1 3.7941 0.2359 3.8755 12 1 1.7881 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3028 2.7167 -0.4059 16 6 -0.0090 3.2334 -2.6898 17 1 0.5274 2.7353 -3.4973 18 6 -1.5131 3.0075 -2.8622 19 6 -1.9914 3.8413 -4.0579 20 8 -1.8192 5.2232 -3.7412 21 6 -0.6155 5.6169 -3.2490 22 6 -0.2991 6.9716 -3.2742 23 6 0.9105 7.4119 -2.7779 24 6 1.8132 6.5039 -2.2524 25 17 3.3356 7.0558 -1.6267 26 6 1.5023 5.1576 -2.2272 27 6 0.2927 4.7100 -2.7320 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8771 0.4817 2.1129 34 1 2.2720 2.1232 -1.9978 35 1 -2.0378 3.3236 -1.9606 36 1 -1.7070 1.9515 -3.0497 37 1 -3.0447 3.6371 -4.2498 38 1 -1.4017 3.5904 -4.9396 39 1 -1.0032 7.6811 -3.6832 40 1 1.1528 8.4641 -2.7995 41 1 2.2079 4.4507 -1.8163 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358076219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:28 Heat of formation + Delta-G solvation = -81.201617 kcal Electronic energy + Delta-G solvation = -25740.845326 eV Core-core repulsion = 22031.679885 eV Total energy + Delta-G solvation = -3709.165441 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.17900 -40.51129 -38.83535 -37.27307 -37.18031 -35.31118 -34.39827 -33.13706 -31.67716 -31.19160 -29.58803 -27.39813 -24.91713 -24.61630 -23.91303 -22.63259 -21.44549 -20.89744 -19.36716 -18.81871 -17.97202 -17.81289 -17.43396 -17.33700 -16.36457 -16.29024 -15.93816 -15.30801 -15.19583 -15.00225 -14.89171 -14.61068 -14.48752 -14.20123 -13.88152 -13.66105 -13.63602 -13.54452 -13.03619 -12.98133 -12.76776 -12.46603 -12.35250 -12.29657 -11.94156 -11.87192 -11.74870 -11.48829 -11.41844 -11.25458 -10.88293 -10.75326 -9.98546 -9.80932 -9.15097 -8.39013 -6.44205 0.06768 0.13311 1.16183 1.23861 1.33049 1.42058 1.66140 2.18518 2.24078 2.36755 2.59308 2.96888 3.40016 3.52347 3.62340 3.84969 3.97905 4.08150 4.19057 4.22307 4.30686 4.31699 4.34754 4.43278 4.46397 4.66426 4.77672 4.81075 4.88501 4.89847 4.99462 5.10126 5.11324 5.17355 5.19172 5.20768 5.39023 5.49192 5.51247 5.63329 6.12073 6.32392 6.57614 6.82520 7.18170 7.40235 8.76199 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.004889 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.536874 B = 5725.311488 C = 7571.018770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.249 3.751 4 H 0.019 0.981 5 C -0.531 4.531 6 H 0.055 0.945 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.934 3.066 10 H -0.257 1.257 11 H -0.295 1.295 12 H -0.263 1.263 13 N -0.699 5.699 14 C 0.517 3.483 15 O -0.576 6.576 16 C -0.060 4.060 17 H 0.128 0.872 18 C -0.143 4.143 19 C 0.063 3.937 20 O -0.317 6.317 21 C 0.142 3.858 22 C -0.135 4.135 23 C -0.069 4.069 24 C -0.079 4.079 25 Cl -0.077 7.077 26 C -0.090 4.090 27 C -0.147 4.147 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.269 0.731 34 H 0.404 0.596 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.143 0.857 38 H 0.089 0.911 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.547 8.199 -14.701 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.144 3.856 4 H 0.037 0.963 5 C -0.569 4.569 6 H 0.074 0.926 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.762 3.238 10 H -0.183 1.183 11 H -0.223 1.223 12 H -0.188 1.188 13 N -0.348 5.348 14 C 0.304 3.696 15 O -0.456 6.456 16 C -0.082 4.082 17 H 0.146 0.854 18 C -0.181 4.181 19 C -0.011 4.011 20 O -0.231 6.231 21 C 0.096 3.904 22 C -0.154 4.154 23 C -0.088 4.088 24 C -0.105 4.105 25 Cl -0.048 7.048 26 C -0.109 4.109 27 C -0.149 4.149 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.240 0.760 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.160 0.840 38 H 0.107 0.893 39 H 0.187 0.813 40 H 0.184 0.816 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.940 8.303 -13.896 22.029 hybrid contribution 1.090 -0.685 1.060 1.667 sum -13.851 7.618 -12.836 20.363 Atomic orbital electron populations 1.21751 0.95131 1.00893 1.01441 1.22195 0.95935 0.98245 1.01197 1.18780 0.93226 0.89720 0.83838 0.96338 1.21264 0.90331 1.38402 1.06895 0.92637 1.25518 0.95656 0.95944 0.99754 1.69974 1.10252 1.46173 1.30792 0.86074 0.79248 0.80063 0.78452 1.18262 1.22285 1.18755 1.46126 1.15562 1.55986 1.17097 1.20667 0.81454 0.77108 0.90395 1.90655 1.54931 1.59011 1.40982 1.20273 0.99999 0.92027 0.95853 0.85406 1.22172 0.91898 1.03591 1.00420 1.23330 1.05152 0.76558 0.96083 1.85989 1.29348 1.29440 1.78344 1.18834 0.84664 0.93251 0.93667 1.20847 0.97652 0.93198 1.03657 1.21133 0.91625 1.00503 0.95503 1.20883 0.90024 0.94073 1.05561 1.98375 1.30592 1.89724 1.86128 1.20987 0.96710 0.94982 0.98263 1.19370 0.95334 0.94905 1.05263 0.94767 0.92462 0.91860 0.90932 0.93928 0.92147 0.76014 0.91261 0.87230 0.83965 0.89310 0.81309 0.81640 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 8.59 71.98 0.62 -4.31 16 2 C -0.14 -5.74 5.11 30.59 0.16 -5.58 16 3 C 0.25 11.59 1.84 44.25 0.08 11.67 16 4 H 0.02 0.99 6.56 -2.39 -0.02 0.98 16 5 C -0.53 -28.81 9.31 25.60 0.24 -28.57 16 6 H 0.06 3.22 7.98 -2.91 -0.02 3.19 16 7 C 0.03 1.76 5.45 84.66 0.46 2.22 16 8 N -0.93 -56.26 13.96 21.45 0.30 -55.96 16 9 Si 0.93 45.04 24.41 68.60 1.67 46.72 16 10 H -0.26 -11.54 6.83 99.48 0.68 -10.86 16 11 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 12 H -0.26 -12.67 6.53 99.48 0.65 -12.02 16 13 N -0.70 -26.39 4.28 -446.10 -1.91 -28.30 16 14 C 0.52 18.11 4.19 87.66 0.37 18.48 16 15 O -0.58 -24.49 13.62 -3.04 -0.04 -24.53 16 16 C -0.06 -1.52 2.69 -12.24 -0.03 -1.55 16 17 H 0.13 2.48 8.13 -2.39 -0.02 2.46 16 18 C -0.14 -2.88 5.35 30.76 0.16 -2.72 16 19 C 0.06 0.89 7.03 72.12 0.51 1.40 16 20 O -0.32 -6.45 10.27 -92.11 -0.95 -7.40 16 21 C 0.14 3.32 6.47 22.52 0.15 3.47 16 22 C -0.14 -2.69 9.93 22.42 0.22 -2.46 16 23 C -0.07 -1.46 9.83 22.24 0.22 -1.24 16 24 C -0.08 -2.16 6.32 22.30 0.14 -2.02 16 25 Cl -0.08 -2.21 28.96 -2.72 -0.08 -2.29 16 26 C -0.09 -2.74 8.88 22.32 0.20 -2.55 16 27 C -0.15 -3.95 5.44 -19.75 -0.11 -4.06 16 28 H 0.03 1.36 7.92 -2.39 -0.02 1.34 16 29 H 0.06 1.97 5.76 -2.38 -0.01 1.96 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.04 1.89 3.22 -2.39 -0.01 1.88 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.40 13.60 8.46 -92.70 -0.78 12.82 16 35 H 0.07 1.81 7.46 -2.39 -0.02 1.79 16 36 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 40 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 41 H 0.12 4.14 6.70 -2.91 -0.02 4.12 16 Total: -1.00 -70.11 339.70 2.58 -67.54 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.20 Total: 22.04 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 3.38 Total: -17.82 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -1.61 Total: -84.26 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.99 Total: -31.93 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.67 Total: 46.72 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.08 Total: -2.29 kcal Total: -70.11 2.58 -67.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358076219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.665 kcal (2) G-P(sol) polarization free energy of solvation -70.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds