Wall clock time and date at job start Tue Mar 31 2020 14:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46869 * 2 1 4 4 H 1.08998 * 109.46836 * 305.01913 * 3 2 1 5 5 C 1.50701 * 109.46812 * 185.02200 * 3 2 1 6 6 H 1.08002 * 120.00010 * 245.22341 * 5 3 2 7 7 C 1.37880 * 120.00109 * 65.22359 * 5 3 2 8 8 N 1.31515 * 120.00159 * 8.69431 * 7 5 3 9 9 Si 1.86805 * 119.99881 * 188.69219 * 7 5 3 10 10 H 1.48502 * 109.46781 * 94.97984 * 9 7 5 11 11 H 1.48500 * 109.46840 * 214.97678 * 9 7 5 12 12 H 1.48492 * 109.47077 * 334.97936 * 9 7 5 13 13 N 1.46496 * 109.47521 * 65.01966 * 3 2 1 14 14 C 1.34769 * 120.00150 * 275.00259 * 13 3 2 15 15 O 1.21282 * 120.00158 * 4.53670 * 14 13 3 16 16 C 1.50700 * 120.00217 * 184.82084 * 14 13 3 17 17 H 1.09008 * 109.43315 * 334.99595 * 16 14 13 18 18 C 1.53075 * 109.43458 * 215.08861 * 16 14 13 19 19 C 1.53391 * 108.31507 * 191.73351 * 18 16 14 20 20 O 1.42825 * 108.32358 * 64.80424 * 19 18 16 21 21 C 1.35874 * 117.84832 * 310.77165 * 20 19 18 22 22 C 1.39142 * 118.47904 * 197.07742 * 21 20 19 23 23 C 1.37962 * 120.23195 * 180.20753 * 22 21 20 24 24 C 1.38387 * 119.94636 * 0.02689 * 23 22 21 25 25 Cl 1.73599 * 120.02202 * 179.90797 * 24 23 22 26 26 C 1.38200 * 119.95661 * 359.93020 * 24 23 22 27 27 C 1.38369 * 121.80440 * 17.17639 * 21 20 19 28 28 H 1.08998 * 109.46516 * 60.00796 * 1 2 3 29 29 H 1.09006 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47047 * 300.00564 * 1 2 3 31 31 H 1.08996 * 109.47552 * 239.99283 * 2 1 3 32 32 H 1.09005 * 109.46907 * 119.99147 * 2 1 3 33 33 H 0.96993 * 119.99963 * 179.97438 * 8 7 5 34 34 H 0.97008 * 119.99926 * 94.99812 * 13 3 2 35 35 H 1.08994 * 109.69814 * 311.47613 * 18 16 14 36 36 H 1.09005 * 109.69636 * 72.07204 * 18 16 14 37 37 H 1.09007 * 109.71327 * 305.09481 * 19 18 16 38 38 H 1.08996 * 109.72115 * 184.52145 * 19 18 16 39 39 H 1.08008 * 119.88007 * 0.23053 * 22 21 20 40 40 H 1.08005 * 120.02465 * 180.02562 * 23 22 21 41 41 H 1.07997 * 119.84867 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9816 -0.8416 5 6 3.5419 1.4443 -0.1244 6 1 4.1506 1.8120 0.6885 7 6 4.1388 0.9766 -1.2759 8 7 3.4037 0.6898 -2.3279 9 14 5.9920 0.7503 -1.3416 10 1 6.3304 -0.6586 -1.0162 11 1 6.4822 1.0749 -2.7052 12 1 6.6363 1.6546 -0.3556 13 7 1.6529 2.0974 1.2519 14 6 0.4356 2.6642 1.3676 15 8 -0.3694 2.5612 0.4663 16 6 0.0770 3.4315 2.6141 17 1 0.6818 3.0730 3.4472 18 6 -1.4052 3.2210 2.9330 19 6 -1.8137 4.2297 4.0141 20 8 -1.6977 5.5444 3.4683 21 6 -0.5423 5.8671 2.8301 22 6 -0.2572 7.2116 2.6134 23 6 0.9036 7.5799 1.9652 24 6 1.7882 6.6096 1.5279 25 17 3.2483 7.0707 0.7100 26 6 1.5082 5.2734 1.7425 27 6 0.3451 4.8989 2.3945 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 3.8237 0.3611 -3.1381 34 1 2.2727 2.1230 1.9978 35 1 -2.0009 3.3831 2.0348 36 1 -1.5616 2.2066 3.3001 37 1 -1.1549 4.1308 4.8769 38 1 -2.8448 4.0473 4.3165 39 1 -0.9470 7.9696 2.9543 40 1 1.1218 8.6245 1.7992 41 1 2.2000 4.5177 1.4008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358076220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:31 Heat of formation + Delta-G solvation = -87.152038 kcal Electronic energy + Delta-G solvation = -25707.180369 eV Core-core repulsion = 21997.756898 eV Total energy + Delta-G solvation = -3709.423471 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.13970 -40.41030 -38.82093 -37.18687 -37.01797 -35.28023 -34.25826 -32.79698 -31.65883 -31.17239 -29.13121 -27.30654 -25.07281 -24.73842 -23.88759 -22.38862 -21.27584 -20.84459 -19.23755 -18.69490 -17.94178 -17.59430 -17.31872 -17.14557 -16.32946 -16.11468 -16.01247 -15.24372 -15.16515 -14.90196 -14.68356 -14.56565 -14.37482 -13.99082 -13.63994 -13.55205 -13.42368 -13.28347 -13.00845 -12.92004 -12.64964 -12.39060 -12.28952 -12.19243 -12.09486 -11.89655 -11.73405 -11.60540 -11.45804 -11.09417 -10.68118 -10.53747 -9.94962 -9.65399 -9.13667 -8.20137 -6.32783 0.08394 0.15160 1.17182 1.42146 1.43068 1.53162 1.75748 2.22022 2.34905 2.46114 2.69625 3.12064 3.43363 3.55903 3.65732 3.90370 4.02044 4.09427 4.23420 4.34220 4.36836 4.44200 4.47138 4.54926 4.66739 4.73880 4.79480 4.88806 4.91089 5.06402 5.12679 5.19824 5.21280 5.24827 5.42699 5.51350 5.53362 5.60610 5.75097 5.90951 6.07317 6.33287 6.75961 6.95537 7.33156 7.54818 8.88465 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.004977 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.743119 B = 5624.588861 C = 7597.089320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 C 0.280 3.720 4 H -0.001 1.001 5 C -0.545 4.545 6 H 0.071 0.929 7 C 0.020 3.980 8 N -0.916 5.916 9 Si 0.961 3.039 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.702 5.702 14 C 0.510 3.490 15 O -0.578 6.578 16 C -0.059 4.059 17 H 0.128 0.872 18 C -0.144 4.144 19 C 0.064 3.936 20 O -0.318 6.318 21 C 0.140 3.860 22 C -0.136 4.136 23 C -0.070 4.070 24 C -0.079 4.079 25 Cl -0.077 7.077 26 C -0.089 4.089 27 C -0.146 4.146 28 H 0.022 0.978 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.402 0.598 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.027 10.318 16.328 20.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 C 0.177 3.823 4 H 0.017 0.983 5 C -0.583 4.583 6 H 0.089 0.911 7 C -0.181 4.181 8 N -0.554 5.554 9 Si 0.786 3.214 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.351 5.351 14 C 0.297 3.703 15 O -0.458 6.458 16 C -0.080 4.080 17 H 0.146 0.854 18 C -0.182 4.182 19 C -0.010 4.010 20 O -0.232 6.232 21 C 0.094 3.906 22 C -0.154 4.154 23 C -0.088 4.088 24 C -0.106 4.106 25 Cl -0.048 7.048 26 C -0.108 4.108 27 C -0.148 4.148 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.237 0.763 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.160 0.840 39 H 0.187 0.813 40 H 0.184 0.816 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.601 10.322 15.447 20.073 hybrid contribution 1.699 -0.656 -0.790 1.985 sum -5.902 9.665 14.657 18.523 Atomic orbital electron populations 1.21705 0.96561 0.99136 1.00657 1.21704 0.94182 0.98988 1.00335 1.18339 0.93596 0.89088 0.81314 0.98345 1.21524 0.91350 1.43264 1.02144 0.91092 1.25705 1.02788 0.94874 0.94687 1.70126 1.37500 1.44690 1.03116 0.85499 0.79767 0.78779 0.77346 1.19730 1.21535 1.18707 1.46353 1.15322 1.55923 1.17505 1.20688 0.81910 0.78883 0.88864 1.90666 1.50408 1.61752 1.42975 1.20254 1.00458 0.90623 0.96704 0.85393 1.22166 0.92662 1.02628 1.00718 1.23321 1.05632 0.77671 0.94410 1.85984 1.33132 1.35019 1.69047 1.18845 0.85428 0.93172 0.93110 1.20841 0.98287 0.93553 1.02764 1.21128 0.91909 1.00108 0.95690 1.20877 0.91565 0.94305 1.03812 1.98366 1.35938 1.92449 1.78026 1.21009 0.96987 0.95398 0.97385 1.19376 0.96237 0.94383 1.04796 0.95907 0.93585 0.92900 0.93212 0.93194 0.92718 0.76295 0.91591 0.87364 0.89198 0.84035 0.81324 0.81620 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 8.47 71.98 0.61 -4.79 16 2 C -0.11 -5.40 5.50 30.60 0.17 -5.23 16 3 C 0.28 14.08 2.11 44.25 0.09 14.17 16 4 H 0.00 -0.09 7.60 -2.39 -0.02 -0.10 16 5 C -0.54 -28.49 8.66 25.60 0.22 -28.27 16 6 H 0.07 3.49 7.73 -2.91 -0.02 3.46 16 7 C 0.02 1.08 5.17 84.66 0.44 1.52 16 8 N -0.92 -53.28 12.11 21.45 0.26 -53.02 16 9 Si 0.96 42.38 29.55 68.60 2.03 44.41 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 13 N -0.70 -27.80 4.26 -446.11 -1.90 -29.70 16 14 C 0.51 19.22 4.55 87.66 0.40 19.62 16 15 O -0.58 -26.78 12.85 -3.04 -0.04 -26.82 16 16 C -0.06 -1.59 2.71 -12.24 -0.03 -1.62 16 17 H 0.13 2.62 8.09 -2.38 -0.02 2.60 16 18 C -0.14 -3.18 5.34 30.75 0.16 -3.01 16 19 C 0.06 0.99 7.03 72.11 0.51 1.50 16 20 O -0.32 -6.90 10.27 -92.13 -0.95 -7.84 16 21 C 0.14 3.49 6.47 22.52 0.15 3.63 16 22 C -0.14 -2.86 9.93 22.42 0.22 -2.64 16 23 C -0.07 -1.55 9.83 22.24 0.22 -1.33 16 24 C -0.08 -2.25 6.32 22.30 0.14 -2.11 16 25 Cl -0.08 -2.23 28.96 -2.72 -0.08 -2.31 16 26 C -0.09 -2.82 8.88 22.33 0.20 -2.62 16 27 C -0.15 -4.16 5.42 -19.75 -0.11 -4.26 16 28 H 0.02 1.09 7.80 -2.39 -0.02 1.07 16 29 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.05 2.18 5.54 -2.39 -0.01 2.17 16 31 H 0.05 2.68 6.75 -2.39 -0.02 2.66 16 32 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 34 H 0.40 13.49 8.49 -92.70 -0.79 12.70 16 35 H 0.07 1.89 7.46 -2.39 -0.02 1.87 16 36 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.09 1.03 8.14 -2.38 -0.02 1.02 16 38 H 0.14 1.37 8.14 -2.39 -0.02 1.36 16 39 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 41 H 0.12 4.37 6.77 -2.91 -0.02 4.35 16 Total: -1.00 -69.19 347.07 2.98 -66.21 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.27 Total: 24.51 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 3.39 Total: -15.44 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -1.64 Total: -82.72 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.99 Total: -34.66 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -0.08 Total: -2.31 kcal Total: -69.19 2.98 -66.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358076220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.938 kcal (2) G-P(sol) polarization free energy of solvation -69.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds