Wall clock time and date at job start Tue Mar 31 2020 14:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21283 * 119.99304 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00578 * 180.02562 * 14 13 3 17 17 C 1.50695 * 109.47300 * 179.97438 * 16 14 13 18 18 C 1.37980 * 119.87392 * 265.00158 * 17 16 14 19 19 C 1.38341 * 120.33543 * 180.02562 * 18 17 16 20 20 Cl 1.73604 * 120.12886 * 180.22748 * 19 18 17 21 21 C 1.38488 * 119.74240 * 0.19795 * 19 18 17 22 22 C 1.37704 * 119.96807 * 359.93727 * 21 19 18 23 23 C 1.38914 * 120.79084 * 359.43260 * 22 21 19 24 24 O 1.36162 * 111.21627 * 180.88561 * 23 22 21 25 25 C 1.43769 * 109.29474 * 341.20784 * 24 23 22 26 26 C 1.51650 * 132.16660 * 179.46118 * 22 21 19 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 34 34 H 1.08995 * 109.47428 * 300.00429 * 16 14 13 35 35 H 1.09008 * 109.47339 * 60.00017 * 16 14 13 36 36 H 1.08001 * 119.82927 * 359.97438 * 18 17 16 37 37 H 1.08002 * 120.01547 * 179.91160 * 21 19 18 38 38 H 1.08999 * 110.74893 * 269.27522 * 25 24 23 39 39 H 1.08997 * 110.90975 * 145.99383 * 25 24 23 40 40 H 1.09003 * 110.93317 * 313.62713 * 26 22 21 41 41 H 1.09000 * 110.93647 * 77.26128 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4343 16 6 0.0366 3.3387 2.6543 17 6 -1.3609 3.8871 2.5225 18 6 -1.5508 5.2040 2.1572 19 6 -2.8295 5.7174 2.0340 20 17 -3.0623 7.3736 1.5683 21 6 -3.9230 4.9050 2.2829 22 6 -3.7345 3.5913 2.6502 23 6 -2.4555 3.0614 2.7645 24 8 -2.4965 1.7471 3.1180 25 6 -3.7853 1.4462 3.6796 26 6 -4.7082 2.4801 2.9923 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0604 -2.9502 33 1 2.2719 2.1232 1.9977 34 1 0.0680 2.6148 3.4685 35 1 0.7280 4.1543 2.8665 36 1 -0.6968 5.8374 1.9674 37 1 -4.9232 5.3017 2.1894 38 1 -3.7794 1.5918 4.7598 39 1 -4.0907 0.4300 3.4301 40 1 -5.4769 2.8337 3.6795 41 1 -5.1567 2.0639 2.0902 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358079355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:32 Heat of formation + Delta-G solvation = -79.444106 kcal Electronic energy + Delta-G solvation = -25170.274896 eV Core-core repulsion = 21461.185667 eV Total energy + Delta-G solvation = -3709.089230 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.21006 -40.57242 -38.79474 -37.28657 -36.82324 -34.56385 -34.24127 -32.87680 -31.87069 -30.25676 -29.35835 -28.06525 -25.02936 -24.33853 -23.25044 -22.70176 -21.59187 -20.97902 -18.91184 -18.39755 -17.89358 -17.45830 -17.37771 -16.98848 -16.76828 -16.27826 -15.95643 -15.12803 -14.91653 -14.74588 -14.54790 -14.23804 -14.04069 -13.98087 -13.79670 -13.53995 -13.28761 -13.17441 -12.90514 -12.77652 -12.71369 -12.62180 -12.55449 -12.23516 -12.13508 -12.04111 -11.72373 -11.57264 -11.41676 -11.02233 -10.67319 -10.50219 -9.83320 -9.56717 -9.02883 -8.14713 -6.31965 0.13252 0.14531 1.11968 1.44440 1.45611 1.57435 1.94894 2.28541 2.36160 2.44241 2.87942 3.14827 3.39440 3.53161 3.78585 3.96570 4.09879 4.15226 4.23696 4.35930 4.37936 4.49560 4.54037 4.58180 4.62326 4.78215 4.81685 4.87101 4.97785 5.05638 5.08967 5.15078 5.26240 5.28182 5.45290 5.46307 5.58213 5.67213 5.81615 5.96478 6.10757 6.19139 6.77362 7.06439 7.35903 7.67344 8.90850 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016126 B = 0.003376 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.929027 B = 8292.026414 C = 9420.700952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 C 0.279 3.721 4 H -0.005 1.005 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.708 5.708 14 C 0.501 3.499 15 O -0.583 6.583 16 C -0.090 4.090 17 C -0.084 4.084 18 C -0.074 4.074 19 C -0.071 4.071 20 Cl -0.064 7.064 21 C -0.064 4.064 22 C -0.173 4.173 23 C 0.110 3.890 24 O -0.321 6.321 25 C 0.042 3.958 26 C -0.101 4.101 27 H 0.041 0.959 28 H 0.020 0.980 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.403 0.597 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.147 0.853 37 H 0.157 0.843 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.942 7.229 15.837 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.013 0.987 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.357 5.357 14 C 0.288 3.712 15 O -0.463 6.463 16 C -0.130 4.130 17 C -0.086 4.086 18 C -0.093 4.093 19 C -0.098 4.098 20 Cl -0.035 7.035 21 C -0.083 4.083 22 C -0.174 4.174 23 C 0.064 3.936 24 O -0.236 6.236 25 C -0.032 4.032 26 C -0.138 4.138 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.238 0.762 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.321 7.066 14.951 22.543 hybrid contribution 1.105 0.017 -0.506 1.216 sum -14.215 7.083 14.445 21.469 Atomic orbital electron populations 1.21632 0.97083 0.98788 1.00118 1.21767 0.93571 0.99375 1.01098 1.18317 0.93554 0.89023 0.81541 0.98699 1.21636 0.91464 1.38682 1.06637 0.90931 1.25785 1.03301 0.94430 0.95056 1.70069 1.36979 1.38545 1.09884 0.85326 0.79174 0.77794 0.78213 1.18320 1.20506 1.21101 1.46238 1.15661 1.56314 1.17498 1.21007 0.81633 0.78550 0.90006 1.90667 1.52297 1.60883 1.42485 1.20605 0.94237 1.02475 0.95659 1.18615 0.93017 0.92175 1.04786 1.20775 0.96852 0.94167 0.97517 1.20638 0.94542 0.87097 1.07534 1.98351 1.97277 1.16981 1.90914 1.20303 0.99141 0.91184 0.97635 1.21003 0.94632 0.95819 1.05921 1.19625 0.94503 0.84059 0.95371 1.86873 1.38279 1.21787 1.76615 1.24204 0.78593 1.01277 0.99150 1.21886 0.97517 0.91655 1.02705 0.93953 0.96039 0.93649 0.94149 0.91193 0.92698 0.76179 0.86474 0.85261 0.83521 0.82554 0.88326 0.85940 0.85809 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.51 71.98 0.61 -5.00 16 2 C -0.12 -6.03 5.45 30.60 0.17 -5.86 16 3 C 0.28 14.54 2.24 44.25 0.10 14.64 16 4 H 0.00 -0.30 7.58 -2.39 -0.02 -0.32 16 5 C -0.55 -29.08 8.73 25.60 0.22 -28.86 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.01 0.77 5.29 84.66 0.45 1.21 16 8 N -0.92 -53.12 11.29 21.45 0.24 -52.88 16 9 Si 0.97 42.35 29.54 68.60 2.03 44.37 16 10 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 N -0.71 -29.34 5.02 -446.11 -2.24 -31.58 16 14 C 0.50 19.91 6.39 87.66 0.56 20.47 16 15 O -0.58 -28.39 13.17 -3.04 -0.04 -28.43 16 16 C -0.09 -2.53 5.79 29.10 0.17 -2.37 16 17 C -0.08 -2.47 4.39 -19.69 -0.09 -2.55 16 18 C -0.07 -2.00 9.43 22.23 0.21 -1.79 16 19 C -0.07 -1.76 6.33 22.35 0.14 -1.62 16 20 Cl -0.06 -1.41 28.97 -2.72 -0.08 -1.49 16 21 C -0.06 -1.42 9.82 22.20 0.22 -1.20 16 22 C -0.17 -4.02 6.27 -19.53 -0.12 -4.15 16 23 C 0.11 3.16 6.75 22.67 0.15 3.31 16 24 O -0.32 -9.02 11.05 -95.39 -1.05 -10.07 16 25 C 0.04 0.69 8.01 72.56 0.58 1.28 16 26 C -0.10 -1.57 7.12 30.73 0.22 -1.35 16 27 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.02 1.08 7.85 -2.39 -0.02 1.06 16 29 H 0.04 2.09 5.64 -2.38 -0.01 2.08 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 3.95 5.95 -2.39 -0.01 3.94 16 32 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.40 13.98 8.54 -92.71 -0.79 13.19 16 34 H 0.12 2.87 8.12 -2.39 -0.02 2.85 16 35 H 0.13 2.79 8.05 -2.38 -0.02 2.77 16 36 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -71.76 353.62 2.72 -69.04 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.27 Total: 24.88 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 3.59 Total: -13.84 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -2.00 Total: -84.46 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -1.09 Total: -38.50 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -71.76 2.72 -69.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358079355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.405 kcal (2) G-P(sol) polarization free energy of solvation -71.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds