Wall clock time and date at job start Tue Mar 31 2020 14:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47153 * 2 1 4 4 H 1.08995 * 109.47439 * 178.47562 * 3 2 1 5 5 C 1.50701 * 109.47335 * 298.47892 * 3 2 1 6 6 H 1.07996 * 120.00011 * 119.99707 * 5 3 2 7 7 C 1.37874 * 119.99781 * 299.99923 * 5 3 2 8 8 N 1.31515 * 120.00354 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99783 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47420 * 59.99789 * 9 7 5 11 11 H 1.48495 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47240 * 299.99859 * 9 7 5 13 13 N 1.46505 * 109.47043 * 58.47945 * 3 2 1 14 14 S 1.65601 * 119.99982 * 96.25491 * 13 3 2 15 15 O 1.42098 * 106.40386 * 311.69254 * 14 13 3 16 16 O 1.42104 * 106.39687 * 178.77552 * 14 13 3 17 17 C 1.76199 * 107.21615 * 65.23585 * 14 13 3 18 18 C 1.38769 * 119.66431 * 269.93194 * 17 14 13 19 19 C 1.37856 * 120.44989 * 179.97438 * 18 17 14 20 20 C 1.38830 * 119.69340 * 0.07034 * 19 18 17 21 21 C 1.40508 * 119.82943 * 359.97438 * 20 19 18 22 22 C 1.36607 * 119.66319 * 89.99990 * 17 14 13 23 23 N 1.35794 * 106.92895 * 180.02562 * 21 20 19 24 24 C 1.30105 * 109.64080 * 0.02562 * 23 21 20 25 25 N 1.36039 * 110.10377 * 359.97438 * 24 23 21 26 26 C 1.46493 * 126.34851 * 179.97438 * 25 24 23 27 27 H 1.09001 * 109.47107 * 175.70969 * 1 2 3 28 28 H 1.08997 * 109.47410 * 295.71123 * 1 2 3 29 29 H 1.09002 * 109.47303 * 55.71286 * 1 2 3 30 30 H 1.09002 * 109.47359 * 240.00660 * 2 1 3 31 31 H 1.08999 * 109.47630 * 120.00626 * 2 1 3 32 32 H 0.97001 * 120.00137 * 180.02562 * 8 7 5 33 33 H 0.96998 * 119.99834 * 276.25997 * 13 3 2 34 34 H 1.08002 * 119.77683 * 0.03521 * 18 17 14 35 35 H 1.08003 * 120.15444 * 180.02562 * 19 18 17 36 36 H 1.08002 * 120.05650 * 0.26994 * 22 17 14 37 37 H 1.08008 * 124.95011 * 179.97438 * 24 23 21 38 38 H 1.09006 * 109.47385 * 89.97743 * 26 25 24 39 39 H 1.09007 * 109.47091 * 209.97470 * 26 25 24 40 40 H 1.08997 * 109.47614 * 329.97851 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1295 1.4427 0.0273 5 6 1.5686 2.1420 -1.2489 6 1 0.9456 3.0208 -1.1731 7 6 1.9330 1.6599 -2.4882 8 7 2.6921 0.5900 -2.5804 9 14 1.3494 2.5274 -4.0362 10 1 1.8449 3.9273 -4.0359 11 1 1.8739 1.8163 -5.2297 12 1 -0.1352 2.5278 -4.0736 13 7 1.5219 2.1436 1.1775 14 16 2.4496 2.2646 2.5438 15 8 2.9428 0.9590 2.8109 16 8 1.6883 3.0145 3.4805 17 6 3.8509 3.2523 2.1370 18 6 5.0027 2.6455 1.6567 19 6 6.1083 3.4027 1.3329 20 6 6.0677 4.7814 1.4904 21 6 4.9014 5.3951 1.9777 22 6 3.7928 4.6075 2.2990 23 7 5.1475 6.7297 2.0259 24 6 6.3572 6.9666 1.6100 25 7 6.9704 5.8017 1.2671 26 6 8.3352 5.6568 0.7549 27 1 -0.3633 -1.0248 -0.0769 28 1 -0.3634 0.4458 0.9259 29 1 -0.3634 0.5789 -0.8491 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.9487 0.2511 -3.4523 33 1 0.6354 2.5369 1.1567 34 1 5.0330 1.5728 1.5348 35 1 7.0021 2.9255 0.9590 36 1 2.8931 5.0688 2.6788 37 1 6.8090 7.9456 1.5462 38 1 9.0241 5.5228 1.5890 39 1 8.3866 4.7884 0.0981 40 1 8.6107 6.5515 0.1965 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358220196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:08 Heat of formation + Delta-G solvation = -23.447907 kcal Electronic energy + Delta-G solvation = -25621.952220 eV Core-core repulsion = 21949.627625 eV Total energy + Delta-G solvation = -3672.324595 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.23567 -38.56980 -38.32855 -37.67828 -36.86208 -35.29429 -34.07334 -32.02882 -31.83123 -30.61916 -28.22920 -27.93972 -25.38211 -24.68023 -23.70876 -21.82336 -21.79611 -20.36322 -19.13048 -18.64774 -18.24498 -17.89518 -17.67580 -16.98383 -16.84624 -16.36412 -15.73424 -15.32093 -15.21903 -14.97449 -14.79185 -14.58936 -14.27281 -14.19957 -14.01029 -13.49318 -13.42432 -13.16393 -13.10390 -12.98267 -12.82912 -12.79390 -12.61675 -12.40340 -12.22022 -11.98944 -11.79019 -11.52301 -11.46233 -11.12229 -10.97366 -10.50486 -9.98794 -9.74980 -9.28855 -8.07107 -6.18513 -0.49938 -0.22870 -0.01554 1.45656 1.47190 1.53296 1.58990 1.70547 2.15883 2.45276 2.52699 2.86776 3.11384 3.22456 3.48094 3.59242 3.80607 3.92498 4.19616 4.25349 4.31167 4.44376 4.52603 4.54796 4.71257 4.72918 4.81282 4.85136 4.92456 5.02355 5.18902 5.26329 5.29722 5.51300 5.60595 5.64689 5.74864 5.77318 6.11144 6.14082 6.18660 6.48067 6.72709 6.89587 7.48652 8.97302 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.005227 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.487687 B = 5355.080240 C = 6774.942792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.136 4.136 3 C 0.284 3.716 4 H 0.027 0.973 5 C -0.526 4.526 6 H 0.062 0.938 7 C 0.026 3.974 8 N -0.909 5.909 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.271 1.271 13 N -1.097 6.097 14 S 2.710 3.290 15 O -0.983 6.983 16 O -0.993 6.993 17 C -0.677 4.677 18 C -0.033 4.033 19 C -0.118 4.118 20 C 0.078 3.922 21 C -0.004 4.004 22 C 0.031 3.969 23 N -0.532 5.532 24 C 0.277 3.723 25 N -0.493 5.493 26 C 0.069 3.931 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.417 0.583 34 H 0.147 0.853 35 H 0.161 0.839 36 H 0.143 0.857 37 H 0.270 0.730 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.229 9.791 4.684 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.175 4.175 3 C 0.179 3.821 4 H 0.045 0.955 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.174 4.174 8 N -0.548 5.548 9 Si 0.774 3.226 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.858 5.858 14 S 2.801 3.199 15 O -0.973 6.973 16 O -0.983 6.983 17 C -0.767 4.767 18 C -0.054 4.054 19 C -0.140 4.140 20 C -0.035 4.035 21 C -0.122 4.122 22 C 0.010 3.990 23 N -0.251 5.251 24 C -0.009 4.009 25 N -0.182 5.182 26 C -0.071 4.071 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.252 0.748 34 H 0.165 0.835 35 H 0.179 0.821 36 H 0.160 0.840 37 H 0.285 0.715 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.890 9.807 5.584 16.393 hybrid contribution 0.267 0.232 -1.643 1.680 sum 12.158 10.038 3.941 16.251 Atomic orbital electron populations 1.21502 0.96072 0.99806 1.00930 1.21900 0.96549 0.98608 1.00489 1.18325 0.93046 0.88907 0.81810 0.95543 1.21440 1.32197 1.12133 0.90760 0.91937 1.25474 0.95187 0.95502 1.01241 1.69962 1.36605 1.23216 1.25039 0.85777 0.78900 0.78461 0.79449 1.20450 1.21109 1.19634 1.55354 1.28777 1.70558 1.31074 1.01078 0.73124 0.73253 0.72474 1.93521 1.81670 1.38016 1.84130 1.93500 1.70444 1.73417 1.60958 1.30350 1.19392 1.07398 1.19539 1.20764 0.90805 1.00619 0.93200 1.20243 1.00561 0.89208 1.03967 1.19220 0.91311 0.91838 1.01108 1.19238 0.95350 0.91018 1.06608 1.19822 0.96979 0.90719 0.91470 1.70404 1.16968 1.13673 1.24077 1.26466 0.87876 0.92998 0.93531 1.45739 1.14400 1.05177 1.52894 1.22446 0.76798 1.06553 1.01295 0.93936 0.93481 0.93139 0.90487 0.95014 0.92701 0.74814 0.83518 0.82142 0.83962 0.71478 0.88706 0.89422 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 9.51 71.98 0.68 -4.50 16 2 C -0.14 -6.34 5.69 30.59 0.17 -6.17 16 3 C 0.28 13.39 2.46 44.24 0.11 13.50 16 4 H 0.03 1.34 7.24 -2.39 -0.02 1.32 16 5 C -0.53 -26.46 7.50 25.60 0.19 -26.27 16 6 H 0.06 3.09 7.81 -2.91 -0.02 3.06 16 7 C 0.03 1.35 5.30 84.65 0.45 1.80 16 8 N -0.91 -48.50 11.31 21.45 0.24 -48.26 16 9 Si 0.95 41.32 29.54 68.60 2.03 43.35 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 N -1.10 -44.63 4.75 -172.52 -0.82 -45.45 16 14 S 2.71 106.70 5.63 -56.49 -0.32 106.38 16 15 O -0.98 -42.55 16.66 -128.00 -2.13 -44.68 16 16 O -0.99 -40.84 17.22 -128.00 -2.20 -43.04 16 17 C -0.68 -25.28 5.81 22.01 0.13 -25.15 16 18 C -0.03 -1.13 8.88 22.31 0.20 -0.93 16 19 C -0.12 -3.44 10.05 22.32 0.22 -3.21 16 20 C 0.08 2.25 6.87 38.86 0.27 2.52 16 21 C 0.00 -0.15 7.23 39.45 0.29 0.13 16 22 C 0.03 1.13 9.51 22.25 0.21 1.34 16 23 N -0.53 -15.98 11.27 -192.02 -2.16 -18.15 16 24 C 0.28 5.25 12.50 180.06 2.25 7.51 16 25 N -0.49 -9.52 3.21 -543.65 -1.74 -11.26 16 26 C 0.07 0.55 11.18 127.77 1.43 1.98 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 1.76 7.59 -2.39 -0.02 1.74 16 29 H 0.05 2.18 7.12 -2.39 -0.02 2.16 16 30 H 0.08 3.96 6.03 -2.39 -0.01 3.95 16 31 H 0.03 1.45 7.80 -2.39 -0.02 1.43 16 32 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 33 H 0.42 15.46 8.68 -96.75 -0.84 14.62 16 34 H 0.15 4.99 7.58 -2.91 -0.02 4.96 16 35 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.14 5.03 7.56 -2.91 -0.02 5.01 16 37 H 0.27 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 39 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -73.19 347.84 -0.28 -73.47 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.23 Total: 25.09 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 6.60 Total: -37.44 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -4.48 Total: -123.12 kcal Atomic # 8 Polarization: -83.39 SS G_CDS: -4.34 Total: -87.72 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 106.70 SS G_CDS: -0.32 Total: 106.38 kcal Total: -73.19 -0.28 -73.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358220196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.023 kcal (2) G-P(sol) polarization free energy of solvation -73.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds