Wall clock time and date at job start Tue Mar 31 2020 14:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47129 * 2 1 4 4 H 1.09002 * 109.47181 * 305.56856 * 3 2 1 5 5 C 1.50706 * 109.46791 * 185.57721 * 3 2 1 6 6 H 1.08001 * 119.99646 * 244.99039 * 5 3 2 7 7 C 1.37877 * 120.00381 * 64.99761 * 5 3 2 8 8 N 1.31516 * 119.99568 * 9.03612 * 7 5 3 9 9 Si 1.86798 * 119.99934 * 189.04547 * 7 5 3 10 10 H 1.48506 * 109.46833 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.46882 * 299.99274 * 9 7 5 12 12 H 1.48498 * 109.47400 * 59.99502 * 9 7 5 13 13 N 1.46496 * 109.47522 * 65.57630 * 3 2 1 14 14 S 1.65606 * 119.99966 * 215.10382 * 13 3 2 15 15 O 1.42093 * 106.39930 * 179.37103 * 14 13 3 16 16 O 1.42101 * 106.39810 * 312.28697 * 14 13 3 17 17 C 1.76193 * 107.21809 * 65.82785 * 14 13 3 18 18 C 1.38771 * 119.66836 * 273.34227 * 17 14 13 19 19 C 1.37858 * 120.45149 * 179.68872 * 18 17 14 20 20 C 1.38832 * 119.68765 * 0.61620 * 19 18 17 21 21 C 1.40503 * 119.83893 * 359.66032 * 20 19 18 22 22 C 1.36609 * 119.66506 * 93.61806 * 17 14 13 23 23 N 1.35779 * 106.93453 * 180.02562 * 21 20 19 24 24 C 1.30106 * 109.64445 * 0.02562 * 23 21 20 25 25 N 1.36041 * 110.09988 * 359.97438 * 24 23 21 26 26 C 1.46502 * 126.34850 * 180.02562 * 25 24 23 27 27 H 1.08999 * 109.46765 * 64.56918 * 1 2 3 28 28 H 1.08999 * 109.47130 * 184.56353 * 1 2 3 29 29 H 1.08995 * 109.46891 * 304.56759 * 1 2 3 30 30 H 1.09000 * 109.47015 * 239.99399 * 2 1 3 31 31 H 1.09005 * 109.46977 * 119.99935 * 2 1 3 32 32 H 0.96992 * 120.00324 * 356.98440 * 8 7 5 33 33 H 0.97001 * 120.00280 * 35.09633 * 13 3 2 34 34 H 1.07997 * 119.77775 * 0.02562 * 18 17 14 35 35 H 1.08000 * 120.15623 * 180.28167 * 19 18 17 36 36 H 1.08008 * 120.05281 * 359.97438 * 22 17 14 37 37 H 1.08007 * 124.95057 * 179.97438 * 24 23 21 38 38 H 1.09000 * 109.46820 * 89.97520 * 26 25 24 39 39 H 1.09001 * 109.46639 * 209.97041 * 26 25 24 40 40 H 1.08995 * 109.47168 * 329.97565 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5976 1.9843 -0.8359 5 6 3.5408 1.4446 -0.1381 6 1 4.1567 1.8131 0.6689 7 6 4.1274 0.9763 -1.2946 8 7 3.3833 0.6949 -2.3419 9 14 5.9788 0.7411 -1.3737 10 1 6.3560 0.2308 -2.7164 11 1 6.6537 2.0414 -1.1303 12 1 6.3985 -0.2361 -0.3374 13 7 1.6644 2.0933 1.2575 14 16 1.2654 3.7005 1.2711 15 8 0.9405 4.0218 2.6166 16 8 2.2785 4.3716 0.5347 17 6 -0.2227 3.8762 0.3442 18 6 -0.1591 4.0440 -1.0318 19 6 -1.3134 4.1767 -1.7736 20 6 -2.5466 4.1548 -1.1363 21 6 -2.6103 3.9907 0.2577 22 6 -1.4273 3.8517 0.9882 23 7 -3.9246 4.0073 0.5982 24 6 -4.6511 4.1664 -0.4694 25 7 -3.8537 4.2631 -1.5673 26 6 -4.2994 4.4483 -2.9506 27 1 -0.3633 0.4413 -0.9281 28 1 -0.3633 -1.0244 0.0818 29 1 -0.3633 0.5831 0.8462 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.4183 0.7751 -2.2869 33 1 1.6494 1.5829 2.0823 34 1 0.8011 4.0654 -1.5257 35 1 -1.2585 4.3024 -2.8449 36 1 -1.4651 3.7246 2.0601 37 1 -5.7300 4.2145 -0.4821 38 1 -4.3659 5.5136 -3.1713 39 1 -3.5849 3.9808 -3.6281 40 1 -5.2788 3.9883 -3.0814 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358220199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:11 Heat of formation + Delta-G solvation = -3.010162 kcal Electronic energy + Delta-G solvation = -25802.208302 eV Core-core repulsion = 22130.769954 eV Total energy + Delta-G solvation = -3671.438348 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.30678 -37.49447 -36.70005 -36.16239 -35.18634 -34.46409 -32.21454 -30.82212 -30.77321 -29.55138 -27.30855 -26.15332 -23.68346 -23.10647 -22.59889 -20.89146 -20.41513 -19.06663 -17.81066 -17.36213 -17.21468 -16.71844 -16.42721 -16.05207 -15.33178 -14.70302 -14.27653 -14.14953 -13.79944 -13.73624 -13.61444 -13.36165 -13.24467 -13.10474 -12.84142 -12.33486 -11.93384 -11.82439 -11.55127 -11.53279 -11.40024 -11.23439 -10.73714 -10.69995 -10.61212 -10.56047 -10.17445 -10.10009 -10.08853 -10.03315 -9.55825 -8.73931 -8.39238 -8.25244 -8.00951 -6.37654 -4.09779 0.79421 0.97821 1.17214 2.33409 2.61380 3.47160 3.49481 3.51278 3.67113 3.84376 4.07473 4.31194 4.33818 4.36932 4.54802 4.73957 4.86021 4.95775 5.02411 5.23385 5.29826 5.33162 5.38132 5.56657 5.89133 5.91099 5.93187 6.09923 6.19848 6.24437 6.31182 6.33386 6.57935 6.65875 6.68370 6.82972 6.86547 7.20827 7.35285 7.64401 7.88803 8.04354 8.49144 8.80966 9.57752 10.98061 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.004371 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.236274 B = 6404.600191 C = 6992.275731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.034 0.966 5 C -0.601 4.601 6 H 0.059 0.941 7 C 0.026 3.974 8 N -0.910 5.910 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.288 1.288 13 N -1.096 6.096 14 S 2.693 3.307 15 O -0.982 6.982 16 O -0.942 6.942 17 C -0.675 4.675 18 C -0.006 4.006 19 C -0.130 4.130 20 C 0.088 3.912 21 C 0.018 3.982 22 C 0.049 3.951 23 N -0.485 5.485 24 C 0.253 3.747 25 N -0.500 5.500 26 C 0.079 3.921 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.269 0.731 33 H 0.407 0.593 34 H 0.151 0.849 35 H 0.130 0.870 36 H 0.146 0.854 37 H 0.215 0.785 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.269 4.823 -1.327 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C 0.165 3.835 4 H 0.051 0.949 5 C -0.640 4.640 6 H 0.077 0.923 7 C -0.179 4.179 8 N -0.546 5.546 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.856 5.856 14 S 2.780 3.220 15 O -0.972 6.972 16 O -0.932 6.932 17 C -0.761 4.761 18 C -0.027 4.027 19 C -0.152 4.152 20 C -0.022 4.022 21 C -0.100 4.100 22 C 0.029 3.971 23 N -0.203 5.203 24 C -0.033 4.033 25 N -0.190 5.190 26 C -0.063 4.063 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.240 0.760 34 H 0.169 0.831 35 H 0.148 0.852 36 H 0.164 0.836 37 H 0.232 0.768 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.935 5.093 -1.431 15.844 hybrid contribution -1.901 0.049 -0.065 1.903 sum -16.836 5.142 -1.495 17.667 Atomic orbital electron populations 1.21844 0.98275 0.99934 1.00746 1.21945 0.92712 0.99706 1.02466 1.18627 0.95787 0.89535 0.79527 0.94864 1.22276 0.90835 1.45872 1.05032 0.92263 1.25730 1.06943 0.93573 0.91641 1.70847 1.07304 1.46813 1.29624 0.83585 0.74390 0.76707 0.75933 1.20872 1.21237 1.21418 1.55385 1.83202 1.29444 1.17569 1.01919 0.73601 0.73513 0.72957 1.93520 1.85398 1.83550 1.34778 1.93615 1.53616 1.72639 1.73299 1.30885 1.19342 1.18006 1.07890 1.20737 0.98886 0.91596 0.91454 1.19999 0.88671 1.06639 0.99846 1.19083 0.85689 1.02222 0.95241 1.19004 0.91928 1.08194 0.90828 1.19799 0.88004 0.89498 0.99833 1.70420 1.01436 1.20673 1.27798 1.25363 0.98526 0.99233 0.80189 1.45384 1.04946 1.59784 1.08907 1.22014 1.01971 1.03154 0.79203 0.93774 0.94154 0.93574 0.90398 0.92803 0.92017 0.75961 0.83120 0.85247 0.83644 0.76849 0.90589 0.89515 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.86 37.16 0.37 -2.30 16 2 C -0.13 -2.68 5.22 -26.73 -0.14 -2.82 16 3 C 0.27 6.16 1.77 -69.08 -0.12 6.04 16 4 H 0.03 0.79 6.35 -51.93 -0.33 0.46 16 5 C -0.60 -16.00 8.77 -34.44 -0.30 -16.30 16 6 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 7 C 0.03 0.70 5.16 -17.82 -0.09 0.61 16 8 N -0.91 -25.50 13.02 55.43 0.72 -24.77 16 9 Si 1.07 24.62 29.91 -169.99 -5.08 19.54 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 N -1.10 -21.73 4.86 -5.88 -0.03 -21.76 16 14 S 2.69 53.14 5.64 -107.50 -0.61 52.54 16 15 O -0.98 -20.02 17.14 -57.17 -0.98 -21.00 16 16 O -0.94 -21.89 17.08 -57.17 -0.98 -22.86 16 17 C -0.67 -11.86 5.85 -39.97 -0.23 -12.10 16 18 C -0.01 -0.10 8.73 -39.52 -0.34 -0.44 16 19 C -0.13 -1.86 10.05 -39.50 -0.40 -2.26 16 20 C 0.09 1.26 6.87 -83.99 -0.58 0.68 16 21 C 0.02 0.29 7.23 -84.71 -0.61 -0.32 16 22 C 0.05 0.82 9.51 -39.61 -0.38 0.45 16 23 N -0.49 -7.09 11.27 -12.05 -0.14 -7.22 16 24 C 0.25 2.59 12.50 -89.78 -1.12 1.47 16 25 N -0.50 -5.19 3.21 -123.18 -0.39 -5.59 16 26 C 0.08 0.43 11.18 59.85 0.67 1.10 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.77 7.65 -51.93 -0.40 0.37 16 30 H 0.08 1.80 6.31 -51.93 -0.33 1.47 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.27 7.33 6.04 -40.82 -0.25 7.08 16 33 H 0.41 7.11 8.84 -34.47 -0.30 6.81 16 34 H 0.15 2.61 7.51 -52.49 -0.39 2.21 16 35 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.15 2.30 7.48 -52.48 -0.39 1.91 16 37 H 0.22 1.07 8.06 -52.48 -0.42 0.64 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -35.52 349.12 -10.49 -46.01 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.98 Total: 6.07 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -3.28 Total: -26.20 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.16 Total: -59.34 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -1.96 Total: -43.87 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.54 kcal Atomic # 16 Polarization: 53.14 SS G_CDS: -0.61 Total: 52.54 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.52 -10.49 -46.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358220199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.996 kcal (2) G-P(sol) polarization free energy of solvation -35.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds