Wall clock time and date at job start Tue Mar 31 2020 14:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47129 * 2 1 4 4 H 1.09002 * 109.47181 * 305.56856 * 3 2 1 5 5 C 1.50706 * 109.46791 * 185.57721 * 3 2 1 6 6 H 1.08001 * 119.99646 * 244.99039 * 5 3 2 7 7 C 1.37877 * 120.00381 * 64.99761 * 5 3 2 8 8 N 1.31516 * 119.99568 * 9.03612 * 7 5 3 9 9 Si 1.86798 * 119.99934 * 189.04547 * 7 5 3 10 10 H 1.48506 * 109.46833 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.46882 * 299.99274 * 9 7 5 12 12 H 1.48498 * 109.47400 * 59.99502 * 9 7 5 13 13 N 1.46496 * 109.47522 * 65.57630 * 3 2 1 14 14 S 1.65606 * 119.99966 * 215.10382 * 13 3 2 15 15 O 1.42093 * 106.39930 * 179.37103 * 14 13 3 16 16 O 1.42101 * 106.39810 * 312.28697 * 14 13 3 17 17 C 1.76193 * 107.21809 * 65.82785 * 14 13 3 18 18 C 1.38771 * 119.66836 * 273.34227 * 17 14 13 19 19 C 1.37858 * 120.45149 * 179.68872 * 18 17 14 20 20 C 1.38832 * 119.68765 * 0.61620 * 19 18 17 21 21 C 1.40503 * 119.83893 * 359.66032 * 20 19 18 22 22 C 1.36609 * 119.66506 * 93.61806 * 17 14 13 23 23 N 1.35779 * 106.93453 * 180.02562 * 21 20 19 24 24 C 1.30106 * 109.64445 * 0.02562 * 23 21 20 25 25 N 1.36041 * 110.09988 * 359.97438 * 24 23 21 26 26 C 1.46502 * 126.34850 * 180.02562 * 25 24 23 27 27 H 1.08999 * 109.46765 * 64.56918 * 1 2 3 28 28 H 1.08999 * 109.47130 * 184.56353 * 1 2 3 29 29 H 1.08995 * 109.46891 * 304.56759 * 1 2 3 30 30 H 1.09000 * 109.47015 * 239.99399 * 2 1 3 31 31 H 1.09005 * 109.46977 * 119.99935 * 2 1 3 32 32 H 0.96992 * 120.00324 * 356.98440 * 8 7 5 33 33 H 0.97001 * 120.00280 * 35.09633 * 13 3 2 34 34 H 1.07997 * 119.77775 * 0.02562 * 18 17 14 35 35 H 1.08000 * 120.15623 * 180.28167 * 19 18 17 36 36 H 1.08008 * 120.05281 * 359.97438 * 22 17 14 37 37 H 1.08007 * 124.95057 * 179.97438 * 24 23 21 38 38 H 1.09000 * 109.46820 * 89.97520 * 26 25 24 39 39 H 1.09001 * 109.46639 * 209.97041 * 26 25 24 40 40 H 1.08995 * 109.47168 * 329.97565 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5976 1.9843 -0.8359 5 6 3.5408 1.4446 -0.1381 6 1 4.1567 1.8131 0.6689 7 6 4.1274 0.9763 -1.2946 8 7 3.3833 0.6949 -2.3419 9 14 5.9788 0.7411 -1.3737 10 1 6.3560 0.2308 -2.7164 11 1 6.6537 2.0414 -1.1303 12 1 6.3985 -0.2361 -0.3374 13 7 1.6644 2.0933 1.2575 14 16 1.2654 3.7005 1.2711 15 8 0.9405 4.0218 2.6166 16 8 2.2785 4.3716 0.5347 17 6 -0.2227 3.8762 0.3442 18 6 -0.1591 4.0440 -1.0318 19 6 -1.3134 4.1767 -1.7736 20 6 -2.5466 4.1548 -1.1363 21 6 -2.6103 3.9907 0.2577 22 6 -1.4273 3.8517 0.9882 23 7 -3.9246 4.0073 0.5982 24 6 -4.6511 4.1664 -0.4694 25 7 -3.8537 4.2631 -1.5673 26 6 -4.2994 4.4483 -2.9506 27 1 -0.3633 0.4413 -0.9281 28 1 -0.3633 -1.0244 0.0818 29 1 -0.3633 0.5831 0.8462 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.4183 0.7751 -2.2869 33 1 1.6494 1.5829 2.0823 34 1 0.8011 4.0654 -1.5257 35 1 -1.2585 4.3024 -2.8449 36 1 -1.4651 3.7246 2.0601 37 1 -5.7300 4.2145 -0.4821 38 1 -4.3659 5.5136 -3.1713 39 1 -3.5849 3.9808 -3.6281 40 1 -5.2788 3.9883 -3.0814 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358220199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:10 Heat of formation + Delta-G solvation = -27.690282 kcal Electronic energy + Delta-G solvation = -25803.278512 eV Core-core repulsion = 22130.769954 eV Total energy + Delta-G solvation = -3672.508558 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.28602 -38.67324 -38.37713 -37.90733 -36.88993 -35.32967 -34.18062 -32.40575 -31.91600 -30.66886 -28.04585 -27.96715 -24.99467 -24.72541 -23.76779 -22.14149 -21.83667 -20.58387 -19.34352 -18.97179 -18.31118 -18.22556 -17.72504 -16.97026 -16.87515 -16.03968 -15.64036 -15.60030 -15.26941 -15.00944 -14.89996 -14.85208 -14.35204 -14.28957 -14.03994 -13.50974 -13.34398 -13.21818 -13.14434 -13.03335 -12.99478 -12.85940 -12.57106 -12.39381 -12.15465 -11.90162 -11.78175 -11.69687 -11.56810 -11.37924 -11.14391 -10.40976 -9.90399 -9.80847 -9.34695 -8.50304 -6.22880 -0.57645 -0.30166 -0.08728 1.55113 1.59075 1.65105 1.66079 1.84394 2.11984 2.46558 2.62586 2.79697 3.07405 3.23869 3.44116 3.56234 3.76869 3.87905 4.13494 4.20275 4.25760 4.30358 4.36280 4.42453 4.48876 4.50807 4.67944 4.70521 4.77793 4.93853 4.98037 5.13613 5.15628 5.18309 5.21490 5.51353 5.53383 5.58172 6.06931 6.07416 6.23423 6.43622 6.69188 6.70557 7.49902 8.86183 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.004371 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.236274 B = 6404.600191 C = 6992.275731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C 0.273 3.727 4 H 0.023 0.977 5 C -0.617 4.617 6 H 0.043 0.957 7 C -0.017 4.017 8 N -0.928 5.928 9 Si 1.102 2.898 10 H -0.281 1.281 11 H -0.283 1.283 12 H -0.270 1.270 13 N -1.094 6.094 14 S 2.706 3.294 15 O -0.993 6.993 16 O -0.985 6.985 17 C -0.674 4.674 18 C -0.035 4.035 19 C -0.114 4.114 20 C 0.080 3.920 21 C 0.002 3.998 22 C 0.035 3.965 23 N -0.530 5.530 24 C 0.280 3.720 25 N -0.492 5.492 26 C 0.068 3.932 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.264 0.736 33 H 0.417 0.583 34 H 0.135 0.865 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.270 0.730 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.313 4.702 -2.326 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.167 3.833 4 H 0.041 0.959 5 C -0.656 4.656 6 H 0.062 0.938 7 C -0.217 4.217 8 N -0.566 5.566 9 Si 0.925 3.075 10 H -0.207 1.207 11 H -0.209 1.209 12 H -0.195 1.195 13 N -0.854 5.854 14 S 2.797 3.203 15 O -0.983 6.983 16 O -0.975 6.975 17 C -0.765 4.765 18 C -0.057 4.057 19 C -0.136 4.136 20 C -0.033 4.033 21 C -0.116 4.116 22 C 0.014 3.986 23 N -0.249 5.249 24 C -0.005 4.005 25 N -0.180 5.180 26 C -0.072 4.072 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.252 0.748 34 H 0.153 0.847 35 H 0.177 0.823 36 H 0.163 0.837 37 H 0.286 0.714 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.970 4.966 -2.411 18.799 hybrid contribution -1.216 0.169 0.192 1.243 sum -19.186 5.135 -2.219 19.985 Atomic orbital electron populations 1.21744 0.95581 1.01521 1.01025 1.21771 0.95063 0.97734 1.01488 1.18433 0.93799 0.90815 0.80229 0.95917 1.22611 0.93008 1.45480 1.04545 0.93820 1.26832 1.10080 0.93263 0.91529 1.70917 1.07264 1.48241 1.30152 0.83114 0.70765 0.77140 0.76442 1.20661 1.20950 1.19521 1.55167 1.83698 1.29340 1.17237 1.01144 0.73737 0.72913 0.72499 1.93492 1.85673 1.83596 1.35548 1.93555 1.56286 1.73591 1.74074 1.30235 1.17962 1.20321 1.07978 1.20669 0.99385 0.94243 0.91372 1.20188 0.87972 1.04374 1.01021 1.19170 0.87337 1.02015 0.94760 1.19179 0.92486 1.08150 0.91795 1.19812 0.88369 0.90415 0.99996 1.70425 1.00851 1.23517 1.30106 1.26495 1.00318 0.94836 0.78898 1.45758 1.03222 1.58093 1.10961 1.22458 1.03666 1.04784 0.76252 0.94114 0.91933 0.92598 0.92773 0.92283 0.92547 0.74802 0.84719 0.82343 0.83675 0.71415 0.88925 0.89373 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 9.86 71.98 0.71 -4.17 16 2 C -0.12 -5.08 5.22 30.59 0.16 -4.92 16 3 C 0.27 12.82 1.77 44.25 0.08 12.89 16 4 H 0.02 1.14 6.35 -2.39 -0.02 1.12 16 5 C -0.62 -33.83 8.77 25.60 0.22 -33.60 16 6 H 0.04 2.47 7.83 -2.91 -0.02 2.45 16 7 C -0.02 -0.94 5.16 84.65 0.44 -0.50 16 8 N -0.93 -53.10 13.02 21.45 0.28 -52.83 16 9 Si 1.10 50.16 29.91 68.60 2.05 52.21 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 13 N -1.09 -44.78 4.86 -172.53 -0.84 -45.62 16 14 S 2.71 111.58 5.64 -56.49 -0.32 111.26 16 15 O -0.99 -41.80 17.14 -128.00 -2.19 -44.00 16 16 O -0.99 -48.35 17.08 -128.00 -2.19 -50.53 16 17 C -0.67 -24.48 5.85 22.02 0.13 -24.35 16 18 C -0.04 -1.22 8.73 22.31 0.19 -1.02 16 19 C -0.11 -3.15 10.05 22.32 0.22 -2.93 16 20 C 0.08 2.11 6.87 38.86 0.27 2.38 16 21 C 0.00 0.06 7.23 39.45 0.29 0.34 16 22 C 0.03 1.18 9.51 22.25 0.21 1.39 16 23 N -0.53 -14.26 11.27 -192.03 -2.16 -16.42 16 24 C 0.28 4.53 12.50 180.06 2.25 6.78 16 25 N -0.49 -8.23 3.21 -543.64 -1.74 -9.97 16 26 C 0.07 0.41 11.18 127.77 1.43 1.84 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.81 7.65 -2.39 -0.02 1.79 16 30 H 0.05 2.54 6.31 -2.39 -0.02 2.53 16 31 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.26 14.83 6.04 -92.71 -0.56 14.27 16 33 H 0.42 14.92 8.84 -96.74 -0.85 14.06 16 34 H 0.14 4.99 7.51 -2.91 -0.02 4.97 16 35 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 36 H 0.15 4.74 7.48 -2.91 -0.02 4.72 16 37 H 0.27 0.95 8.06 -2.91 -0.02 0.92 16 38 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.13 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: -1.00 -79.76 349.12 -0.09 -79.85 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.43 Total: 21.92 kcal Atomic # 6 Polarization: -52.46 SS G_CDS: 6.60 Total: -45.86 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -4.47 Total: -124.84 kcal Atomic # 8 Polarization: -90.15 SS G_CDS: -4.38 Total: -94.53 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.05 Total: 52.21 kcal Atomic # 16 Polarization: 111.58 SS G_CDS: -0.32 Total: 111.26 kcal Total: -79.76 -0.09 -79.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358220199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.159 kcal (2) G-P(sol) polarization free energy of solvation -79.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds