Wall clock time and date at job start Tue Mar 31 2020 14:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 N 1.46506 * 109.46928 * 124.99884 * 3 2 1 5 5 C 1.46496 * 119.99759 * 90.00349 * 4 3 2 6 6 C 1.50695 * 109.47390 * 89.99689 * 5 4 3 7 7 C 1.33394 * 125.20470 * 89.99761 * 6 5 4 8 8 C 1.38419 * 114.92228 * 179.97438 * 7 6 5 9 9 C 1.33390 * 114.92343 * 0.02562 * 8 7 6 10 10 S 1.75882 * 125.20550 * 269.69377 * 6 5 4 11 11 C 1.34771 * 120.00084 * 270.00021 * 4 3 2 12 12 O 1.21583 * 119.99981 * 180.02562 * 11 4 3 13 13 N 1.34776 * 119.99954 * 0.02562 * 11 4 3 14 14 C 1.46501 * 119.99941 * 180.02562 * 13 11 4 15 15 C 1.50698 * 109.47342 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99780 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00109 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99993 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99893 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99960 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00048 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99736 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47407 * 60.00402 * 22 20 18 24 24 H 1.48503 * 109.47068 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47204 * 299.99765 * 22 20 18 26 26 H 1.07994 * 120.00398 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.99861 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00021 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 30 30 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 31 31 H 1.09001 * 109.47057 * 210.00204 * 5 4 3 32 32 H 1.08999 * 109.47333 * 329.99764 * 5 4 3 33 33 H 1.08002 * 122.53800 * 359.96101 * 7 6 5 34 34 H 1.08001 * 122.53995 * 180.02562 * 8 7 6 35 35 H 1.07997 * 125.20331 * 180.02562 * 9 8 7 36 36 H 0.97000 * 120.00335 * 359.97438 * 13 11 4 37 37 H 1.09001 * 109.47019 * 300.00247 * 14 13 11 38 38 H 1.09000 * 109.47410 * 60.00065 * 14 13 11 39 39 H 0.96999 * 120.00168 * 0.02562 * 17 15 14 40 40 H 0.96996 * 120.00141 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3589 0.8257 0.9695 6 6 5.2615 1.9480 0.5260 7 6 5.9348 2.7612 1.3412 8 6 6.7028 3.7207 0.7043 9 6 6.6527 3.6871 -0.6282 10 16 5.5942 2.3813 -1.1459 11 6 2.5936 1.8222 2.3214 12 8 3.3658 1.8449 3.2603 13 7 1.3375 2.2875 2.4705 14 6 0.9028 2.8210 3.7638 15 6 -0.5321 3.2710 3.6649 16 8 -1.1323 3.1576 2.6170 17 7 -1.1483 3.7993 4.7408 18 6 -2.4535 4.2092 4.6507 19 1 -2.9880 4.1082 3.7176 20 6 -3.0887 4.7544 5.7598 21 7 -2.4382 4.8777 6.8949 22 14 -4.8672 5.3121 5.6371 23 1 -5.7236 4.1575 5.2649 24 1 -5.3077 5.8535 6.9479 25 1 -4.9841 6.3695 4.6009 26 1 -0.5400 0.9352 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 4.7141 0.4278 1.9201 32 1 4.3666 0.0352 0.2191 33 1 5.8844 2.6775 2.4168 34 1 7.2975 4.4419 1.2452 35 1 7.1849 4.3560 -1.2883 36 1 0.7216 2.2698 1.7214 37 1 0.9882 2.0448 4.5243 38 1 1.5316 3.6683 4.0373 39 1 -0.6682 3.8903 5.5787 40 1 -2.8817 5.2579 7.6692 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358281727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:26 Heat of formation + Delta-G solvation = -1.051268 kcal Electronic energy + Delta-G solvation = -24409.579025 eV Core-core repulsion = 20738.225621 eV Total energy + Delta-G solvation = -3671.353403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.23429 -38.35580 -37.78176 -36.23632 -34.54675 -33.80264 -33.19072 -31.38289 -30.61194 -27.75224 -26.69766 -25.61497 -24.30579 -23.02236 -20.50294 -19.72171 -19.61622 -19.14665 -18.40680 -17.85887 -17.21052 -16.42571 -15.79028 -15.62095 -15.30257 -14.89512 -14.65307 -14.50396 -14.19310 -13.88712 -13.54084 -13.41248 -13.21676 -13.01007 -12.85180 -12.55068 -12.26112 -11.95810 -11.87038 -11.62435 -11.53143 -11.39545 -11.10109 -10.88351 -10.50594 -10.31190 -10.10643 -9.61893 -9.51808 -8.99765 -8.83680 -8.61376 -8.58389 -8.51743 -8.09189 -6.50595 -3.92613 0.81647 1.50274 1.85089 2.08101 2.59252 2.98425 3.13949 3.21738 3.25638 3.37398 3.76140 4.04849 4.20895 4.63685 4.75286 4.86729 4.91157 4.92779 5.03799 5.18120 5.20167 5.41019 5.51075 5.54613 5.59239 5.87274 5.90955 6.02178 6.05579 6.09255 6.21256 6.36512 6.41040 6.52737 6.58665 6.77515 7.01554 7.46394 7.92959 8.15403 8.46121 8.77886 9.05282 9.40433 9.88327 10.66308 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.002744 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.299712 B =10199.983788 C =10952.826004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.189 4.189 3 C 0.136 3.864 4 N -0.622 5.622 5 C 0.206 3.794 6 C -0.194 4.194 7 C -0.114 4.114 8 C -0.134 4.134 9 C -0.213 4.213 10 S 0.084 5.916 11 C 0.710 3.290 12 O -0.592 6.592 13 N -0.722 5.722 14 C 0.127 3.873 15 C 0.429 3.571 16 O -0.598 6.598 17 N -0.549 5.549 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.895 5.895 22 Si 0.933 3.067 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.161 0.839 36 H 0.406 0.594 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.396 0.604 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.473 -6.994 -14.094 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.208 4.208 3 C 0.013 3.987 4 N -0.358 5.358 5 C 0.081 3.919 6 C -0.312 4.312 7 C -0.145 4.145 8 C -0.165 4.165 9 C -0.348 4.348 10 S 0.347 5.653 11 C 0.412 3.588 12 O -0.471 6.471 13 N -0.380 5.380 14 C -0.002 4.002 15 C 0.215 3.785 16 O -0.485 6.485 17 N -0.184 5.184 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.760 3.240 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.128 0.872 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.179 0.821 36 H 0.246 0.754 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.230 0.770 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.075 -7.494 -15.274 22.731 hybrid contribution -0.426 1.042 1.498 1.874 sum 14.649 -6.452 -13.776 21.118 Atomic orbital electron populations 1.24026 0.95773 1.02778 0.97413 1.23234 0.96272 0.98586 1.02711 1.20660 0.92384 0.95942 0.89738 1.47109 1.11849 1.66780 1.10093 1.19647 0.78708 0.90909 1.02670 1.25010 1.05699 1.05257 0.95246 1.20324 0.97269 0.95095 1.01795 1.20255 1.01846 1.00726 0.93646 1.25591 1.06150 1.04024 0.99077 1.84115 1.44570 1.28878 1.07753 1.15761 0.82350 0.78123 0.82605 1.90877 1.54025 1.62974 1.39206 1.44930 1.12225 1.65888 1.14992 1.20796 0.94810 0.99490 0.85068 1.19750 0.87980 0.85224 0.85547 1.90477 1.66932 1.61630 1.29446 1.41776 1.12607 1.52799 1.11173 1.19673 0.87297 1.37645 0.98837 0.87749 1.25316 1.00530 0.97109 0.94729 1.69603 1.37972 1.44417 1.01514 0.85881 0.81565 0.79136 0.77429 1.19787 1.20861 1.19789 0.87662 0.88176 0.87212 0.89847 0.89634 0.87756 0.89628 0.83624 0.84345 0.82103 0.75443 0.90025 0.90071 0.77026 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 14.32 29.01 0.42 -1.37 16 2 C -0.19 -1.96 9.85 -36.03 -0.35 -2.31 16 3 C 0.14 1.48 5.61 -5.19 -0.03 1.45 16 4 N -0.62 -8.00 2.44 -182.19 -0.44 -8.44 16 5 C 0.21 2.25 5.90 -5.20 -0.03 2.21 16 6 C -0.19 -2.17 6.09 -36.00 -0.22 -2.39 16 7 C -0.11 -1.36 10.05 -41.21 -0.41 -1.77 16 8 C -0.13 -1.39 10.18 -41.21 -0.42 -1.81 16 9 C -0.21 -2.01 11.23 29.04 0.33 -1.68 16 10 S 0.08 0.80 23.33 -107.50 -2.51 -1.71 16 11 C 0.71 11.82 8.28 -86.92 -0.72 11.10 16 12 O -0.59 -11.29 15.92 5.29 0.08 -11.20 16 13 N -0.72 -12.62 5.39 -66.42 -0.36 -12.97 16 14 C 0.13 2.41 6.15 -5.19 -0.03 2.37 16 15 C 0.43 9.88 7.85 -10.99 -0.09 9.80 16 16 O -0.60 -15.16 15.24 5.55 0.08 -15.08 16 17 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 18 C -0.31 -8.28 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 21 N -0.89 -23.92 13.05 55.50 0.72 -23.20 16 22 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H 0.11 1.27 7.84 -52.49 -0.41 0.86 16 27 H 0.10 0.99 8.06 -52.48 -0.42 0.56 16 28 H 0.11 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.08 1.00 6.02 -51.93 -0.31 0.69 16 30 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.10 1.22 7.42 -51.93 -0.39 0.84 16 32 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 33 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.41 7.01 5.17 -40.82 -0.21 6.80 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -31.15 364.74 -8.76 -39.91 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -4.95 Total: 17.62 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -1.80 Total: 7.76 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.14 Total: -58.30 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 0.17 Total: -26.28 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.15 -8.76 -39.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358281727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.861 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds