Wall clock time and date at job start Tue Mar 31 2020 14:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 N 1.46506 * 109.46928 * 124.99884 * 3 2 1 5 5 C 1.46496 * 119.99759 * 90.00349 * 4 3 2 6 6 C 1.50695 * 109.47390 * 89.99689 * 5 4 3 7 7 C 1.33394 * 125.20470 * 89.99761 * 6 5 4 8 8 C 1.38419 * 114.92228 * 179.97438 * 7 6 5 9 9 C 1.33390 * 114.92343 * 0.02562 * 8 7 6 10 10 S 1.75882 * 125.20550 * 269.69377 * 6 5 4 11 11 C 1.34771 * 120.00084 * 270.00021 * 4 3 2 12 12 O 1.21583 * 119.99981 * 180.02562 * 11 4 3 13 13 N 1.34776 * 119.99954 * 0.02562 * 11 4 3 14 14 C 1.46501 * 119.99941 * 180.02562 * 13 11 4 15 15 C 1.50698 * 109.47342 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99780 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00109 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99993 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99893 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99960 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00048 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99736 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47407 * 60.00402 * 22 20 18 24 24 H 1.48503 * 109.47068 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47204 * 299.99765 * 22 20 18 26 26 H 1.07994 * 120.00398 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.99861 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00021 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 30 30 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 31 31 H 1.09001 * 109.47057 * 210.00204 * 5 4 3 32 32 H 1.08999 * 109.47333 * 329.99764 * 5 4 3 33 33 H 1.08002 * 122.53800 * 359.96101 * 7 6 5 34 34 H 1.08001 * 122.53995 * 180.02562 * 8 7 6 35 35 H 1.07997 * 125.20331 * 180.02562 * 9 8 7 36 36 H 0.97000 * 120.00335 * 359.97438 * 13 11 4 37 37 H 1.09001 * 109.47019 * 300.00247 * 14 13 11 38 38 H 1.09000 * 109.47410 * 60.00065 * 14 13 11 39 39 H 0.96999 * 120.00168 * 0.02562 * 17 15 14 40 40 H 0.96996 * 120.00141 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3589 0.8257 0.9695 6 6 5.2615 1.9480 0.5260 7 6 5.9348 2.7612 1.3412 8 6 6.7028 3.7207 0.7043 9 6 6.6527 3.6871 -0.6282 10 16 5.5942 2.3813 -1.1459 11 6 2.5936 1.8222 2.3214 12 8 3.3658 1.8449 3.2603 13 7 1.3375 2.2875 2.4705 14 6 0.9028 2.8210 3.7638 15 6 -0.5321 3.2710 3.6649 16 8 -1.1323 3.1576 2.6170 17 7 -1.1483 3.7993 4.7408 18 6 -2.4535 4.2092 4.6507 19 1 -2.9880 4.1082 3.7176 20 6 -3.0887 4.7544 5.7598 21 7 -2.4382 4.8777 6.8949 22 14 -4.8672 5.3121 5.6371 23 1 -5.7236 4.1575 5.2649 24 1 -5.3077 5.8535 6.9479 25 1 -4.9841 6.3695 4.6009 26 1 -0.5400 0.9352 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 4.7141 0.4278 1.9201 32 1 4.3666 0.0352 0.2191 33 1 5.8844 2.6775 2.4168 34 1 7.2975 4.4419 1.2452 35 1 7.1849 4.3560 -1.2883 36 1 0.7216 2.2698 1.7214 37 1 0.9882 2.0448 4.5243 38 1 1.5316 3.6683 4.0373 39 1 -0.6682 3.8903 5.5787 40 1 -2.8817 5.2579 7.6692 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358281727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:25 Heat of formation + Delta-G solvation = -20.414729 kcal Electronic energy + Delta-G solvation = -24410.418687 eV Core-core repulsion = 20738.225621 eV Total energy + Delta-G solvation = -3672.193066 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50566 -40.12018 -38.71730 -37.32450 -36.27376 -35.39490 -34.21733 -33.36972 -31.57341 -29.25087 -27.60122 -26.94618 -25.90019 -23.91432 -21.59918 -21.41565 -20.70612 -20.14550 -19.99599 -19.39293 -18.07911 -17.64127 -17.38005 -16.90341 -16.53539 -16.35355 -16.04897 -15.81386 -15.69650 -15.20365 -15.08879 -14.56509 -14.08000 -13.97871 -13.92690 -13.70960 -13.53330 -13.50764 -13.35791 -12.89677 -12.85567 -12.46456 -12.35562 -12.27967 -12.13560 -11.68415 -11.55598 -11.43309 -10.54901 -10.43168 -10.28070 -10.09262 -9.79305 -9.57984 -9.33715 -8.50310 -6.00518 -0.00171 0.72774 1.06094 1.17839 1.38297 1.42756 1.53425 1.64634 1.89783 1.93335 2.09496 2.29013 2.90162 3.16904 3.17359 3.79718 3.89661 4.02317 4.12641 4.21928 4.27007 4.36236 4.41929 4.44880 4.58569 4.69138 4.72304 4.73401 5.03048 5.22305 5.30838 5.36145 5.38977 5.41966 5.56047 5.67295 5.67819 5.89375 5.92589 6.48413 6.85857 7.03764 7.41384 7.49447 7.94599 8.66500 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.002744 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.299712 B =10199.983788 C =10952.826004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.181 4.181 3 C 0.133 3.867 4 N -0.613 5.613 5 C 0.204 3.796 6 C -0.209 4.209 7 C -0.132 4.132 8 C -0.151 4.151 9 C -0.210 4.210 10 S 0.118 5.882 11 C 0.707 3.293 12 O -0.620 6.620 13 N -0.725 5.725 14 C 0.140 3.860 15 C 0.434 3.566 16 O -0.622 6.622 17 N -0.559 5.559 18 C -0.337 4.337 19 H 0.087 0.913 20 C -0.010 4.010 21 N -0.917 5.917 22 Si 0.996 3.004 23 H -0.269 1.269 24 H -0.272 1.272 25 H -0.270 1.270 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.129 0.871 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.151 0.849 35 H 0.187 0.813 36 H 0.407 0.593 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.398 0.602 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.925 -7.301 -15.575 23.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.200 4.200 3 C 0.011 3.989 4 N -0.348 5.348 5 C 0.079 3.921 6 C -0.328 4.328 7 C -0.163 4.163 8 C -0.181 4.181 9 C -0.346 4.346 10 S 0.381 5.619 11 C 0.409 3.591 12 O -0.501 6.501 13 N -0.384 5.384 14 C 0.011 3.989 15 C 0.221 3.779 16 O -0.509 6.509 17 N -0.194 5.194 18 C -0.466 4.466 19 H 0.105 0.895 20 C -0.211 4.211 21 N -0.557 5.557 22 Si 0.819 3.181 23 H -0.194 1.194 24 H -0.197 1.197 25 H -0.195 1.195 26 H 0.107 0.893 27 H 0.130 0.870 28 H 0.147 0.853 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.168 0.832 35 H 0.204 0.796 36 H 0.247 0.753 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.232 0.768 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.554 -7.820 -16.788 24.185 hybrid contribution -0.477 1.120 1.876 2.236 sum 15.077 -6.700 -14.911 22.239 Atomic orbital electron populations 1.24061 0.96215 1.02613 0.98307 1.23307 0.95994 0.98903 1.01785 1.20807 0.92242 0.95942 0.89899 1.47146 1.12859 1.65560 1.09212 1.19837 0.77424 0.91601 1.03208 1.25077 1.05790 1.05280 0.96619 1.20371 0.98481 0.96294 1.01176 1.20389 1.02389 1.01041 0.94322 1.25974 1.05593 1.03982 0.99059 1.83947 1.43958 1.28359 1.05659 1.15899 0.81637 0.78097 0.83497 1.90859 1.54532 1.64112 1.40562 1.44892 1.12808 1.66329 1.14350 1.20593 0.91931 1.00048 0.86305 1.20361 0.89235 0.83686 0.84599 1.90456 1.68066 1.62165 1.30259 1.41821 1.12308 1.53524 1.11754 1.19706 0.88509 1.39588 0.98800 0.89488 1.26125 1.04368 0.96530 0.94079 1.69674 1.39477 1.44542 1.01983 0.84937 0.76616 0.78685 0.77813 1.19426 1.19675 1.19471 0.89333 0.87022 0.85348 0.91158 0.87103 0.88989 0.86343 0.85587 0.83157 0.79581 0.75300 0.89098 0.89291 0.76757 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.68 14.32 67.78 0.97 -2.71 16 2 C -0.18 -3.42 9.85 25.65 0.25 -3.17 16 3 C 0.13 2.69 5.61 85.63 0.48 3.17 16 4 N -0.61 -15.03 2.44 -848.58 -2.07 -17.10 16 5 C 0.20 4.14 5.90 85.63 0.50 4.65 16 6 C -0.21 -4.44 6.09 24.59 0.15 -4.29 16 7 C -0.13 -3.12 10.05 21.22 0.21 -2.91 16 8 C -0.15 -2.99 10.18 21.22 0.22 -2.77 16 9 C -0.21 -3.49 11.23 66.72 0.75 -2.75 16 10 S 0.12 1.95 23.33 -56.49 -1.32 0.63 16 11 C 0.71 23.31 8.28 179.06 1.48 24.80 16 12 O -0.62 -23.75 15.92 -3.98 -0.06 -23.82 16 13 N -0.72 -25.29 5.39 -482.30 -2.60 -27.89 16 14 C 0.14 5.33 6.15 85.63 0.53 5.85 16 15 C 0.43 20.28 7.85 87.66 0.69 20.96 16 16 O -0.62 -32.04 15.24 -3.07 -0.05 -32.08 16 17 N -0.56 -28.25 5.29 -306.97 -1.62 -29.87 16 18 C -0.34 -18.56 9.68 84.04 0.81 -17.75 16 19 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 20 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 21 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 22 Si 1.00 41.74 29.55 68.60 2.03 43.76 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H 0.09 2.17 7.84 -2.91 -0.02 2.15 16 27 H 0.11 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.07 1.64 6.02 -2.38 -0.01 1.63 16 30 H 0.11 1.70 8.07 -2.39 -0.02 1.68 16 31 H 0.09 2.12 7.42 -2.39 -0.02 2.10 16 32 H 0.12 1.61 8.07 -2.39 -0.02 1.59 16 33 H 0.13 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 35 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.41 14.11 5.17 -92.71 -0.48 13.63 16 37 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 40 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -66.72 364.74 1.97 -64.75 By element: Atomic # 1 Polarization: 47.38 SS G_CDS: -0.13 Total: 47.25 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: 7.51 Total: 23.01 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -6.01 Total: -123.50 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -0.11 Total: -55.90 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.32 Total: 0.63 kcal Total: -66.72 1.97 -64.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358281727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.331 kcal (2) G-P(sol) polarization free energy of solvation -66.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds