Wall clock time and date at job start Tue Mar 31 2020 14:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00062 * 2 1 4 4 N 1.46506 * 109.46918 * 126.22158 * 3 2 1 5 5 C 1.46501 * 119.99638 * 85.89406 * 4 3 2 6 6 C 1.50703 * 109.47202 * 92.70684 * 5 4 3 7 7 H 1.07999 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00110 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99806 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00207 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47171 * 59.99274 * 10 8 6 12 12 H 1.48506 * 109.47347 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46978 * 299.99349 * 10 8 6 14 14 C 1.34767 * 120.00072 * 265.88694 * 4 3 2 15 15 O 1.21278 * 120.00377 * 356.21764 * 14 4 3 16 16 C 1.50704 * 120.00127 * 176.21322 * 14 4 3 17 17 H 1.09003 * 109.46610 * 327.31590 * 16 14 4 18 18 C 1.52997 * 109.47027 * 87.31331 * 16 14 4 19 19 O 1.42902 * 109.47339 * 185.45213 * 18 16 14 20 20 C 1.50696 * 109.47389 * 207.31775 * 16 14 4 21 21 C 1.38242 * 119.98405 * 299.72269 * 20 16 14 22 22 C 1.38218 * 120.01325 * 179.72375 * 21 20 16 23 23 C 1.38353 * 119.98217 * 0.55342 * 22 21 20 24 24 Cl 1.73609 * 120.01186 * 179.74395 * 23 22 21 25 25 C 1.38351 * 119.97772 * 359.72371 * 23 22 21 26 26 C 1.38211 * 119.98352 * 359.97438 * 25 23 22 27 27 H 1.08000 * 120.00056 * 185.08060 * 1 2 3 28 28 H 1.08001 * 119.99891 * 5.07642 * 1 2 3 29 29 H 1.07999 * 119.99612 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47113 * 6.22450 * 3 2 1 31 31 H 1.08998 * 109.46973 * 246.22246 * 3 2 1 32 32 H 1.08999 * 109.46875 * 212.70387 * 5 4 3 33 33 H 1.09003 * 109.47206 * 332.70453 * 5 4 3 34 34 H 0.96998 * 120.00136 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.47317 * 305.45160 * 18 16 14 36 36 H 1.08998 * 109.47116 * 65.45176 * 18 16 14 37 37 H 0.96694 * 114.00289 * 179.97438 * 19 18 16 38 38 H 1.07997 * 119.99661 * 0.02562 * 21 20 16 39 39 H 1.07997 * 120.00907 * 180.26856 * 22 21 20 40 40 H 1.07995 * 120.00838 * 179.97438 * 25 23 22 41 41 H 1.07998 * 119.99257 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0145 1.3198 1.1143 5 6 4.3468 0.7336 0.9480 6 6 5.3156 1.8031 0.5137 7 1 4.9731 2.8179 0.3749 8 6 6.6390 1.4859 0.2924 9 7 7.0559 0.2500 0.4609 10 14 7.8400 2.8117 -0.2453 11 1 7.8943 3.8783 0.7864 12 1 9.1904 2.2174 -0.4140 13 1 7.3900 3.3934 -1.5355 14 6 2.6638 1.8728 2.2923 15 8 1.5873 2.4189 2.4092 16 6 3.6093 1.8125 3.4642 17 1 4.1836 0.8870 3.4204 18 6 4.5632 3.0075 3.4120 19 8 5.5394 2.8836 4.4482 20 6 2.8214 1.8544 4.7481 21 6 2.0168 2.9427 5.0297 22 6 1.2894 2.9791 6.2044 23 6 1.3756 1.9314 7.1038 24 17 0.4674 1.9794 8.5826 25 6 2.1854 0.8451 6.8241 26 6 2.9074 0.8070 5.6462 27 1 -0.5400 -0.9316 0.0828 28 1 -0.5400 0.9317 -0.0828 29 1 1.8499 -0.9353 0.0004 30 1 1.3604 2.1306 0.1114 31 1 2.6040 1.4125 -0.9404 32 1 4.6770 0.3074 1.8953 33 1 4.3071 -0.0499 0.1912 34 1 7.9870 0.0269 0.3056 35 1 5.0626 3.0317 2.4434 36 1 3.9988 3.9293 3.5529 37 1 6.1791 3.6082 4.4747 38 1 1.9527 3.7623 4.3294 39 1 0.6575 3.8274 6.4223 40 1 2.2534 0.0271 7.5260 41 1 3.5393 -0.0411 5.4275 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359392580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:53 Heat of formation + Delta-G solvation = -62.755700 kcal Electronic energy + Delta-G solvation = -25443.803453 eV Core-core repulsion = 21735.437887 eV Total energy + Delta-G solvation = -3708.365566 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52343 -39.90523 -37.86234 -37.33253 -37.05427 -35.24592 -34.13079 -33.51954 -32.01641 -29.84033 -29.26427 -27.18732 -24.96812 -24.82311 -23.74508 -22.59014 -20.80853 -19.97768 -18.67274 -18.45900 -18.12636 -17.78909 -17.03735 -16.59718 -16.43140 -16.13645 -15.87942 -15.54996 -15.29672 -14.77397 -14.59793 -14.34300 -14.26056 -14.12524 -13.93354 -13.76748 -13.55228 -13.07981 -12.80239 -12.74513 -12.55036 -12.43750 -12.29780 -12.21518 -12.00326 -11.89336 -11.75097 -11.63181 -10.88469 -10.83262 -10.51658 -10.28851 -9.93472 -9.55452 -9.47888 -8.18116 -6.30825 0.15371 0.37818 1.13796 1.26082 1.44286 1.46291 1.52660 1.63183 2.30893 2.44031 2.73315 3.12900 3.35474 3.63216 3.83650 3.96621 3.97612 4.04349 4.16356 4.24709 4.30394 4.41148 4.47735 4.55964 4.71831 4.75103 4.80212 4.88678 4.93579 5.02211 5.03224 5.21486 5.25220 5.29675 5.62757 5.64069 5.67117 5.76628 5.83467 5.86906 6.06038 6.51912 6.80183 6.89666 7.24198 7.40369 8.87697 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.004182 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.184935 B = 6693.666026 C = 8162.142553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.183 4.183 3 C 0.141 3.859 4 N -0.591 5.591 5 C 0.250 3.750 6 C -0.540 4.540 7 H 0.059 0.941 8 C 0.027 3.973 9 N -0.917 5.917 10 Si 0.950 3.050 11 H -0.265 1.265 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.527 3.473 15 O -0.573 6.573 16 C -0.059 4.059 17 H 0.097 0.903 18 C 0.092 3.908 19 O -0.576 6.576 20 C -0.066 4.066 21 C -0.080 4.080 22 C -0.116 4.116 23 C -0.042 4.042 24 Cl -0.068 7.068 25 C -0.113 4.113 26 C -0.105 4.105 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.028 0.972 33 H 0.022 0.978 34 H 0.267 0.733 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.394 0.606 38 H 0.126 0.874 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.382 2.822 8.451 12.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.202 4.202 3 C 0.018 3.982 4 N -0.320 5.320 5 C 0.129 3.871 6 C -0.578 4.578 7 H 0.077 0.923 8 C -0.174 4.174 9 N -0.555 5.555 10 Si 0.775 3.225 11 H -0.189 1.189 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.315 3.685 15 O -0.455 6.455 16 C -0.081 4.081 17 H 0.115 0.885 18 C 0.013 3.987 19 O -0.384 6.384 20 C -0.066 4.066 21 C -0.099 4.099 22 C -0.135 4.135 23 C -0.069 4.069 24 Cl -0.039 7.039 25 C -0.131 4.131 26 C -0.123 4.123 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.243 0.757 38 H 0.144 0.856 39 H 0.165 0.835 40 H 0.170 0.830 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.171 2.439 8.721 12.889 hybrid contribution 1.267 0.762 -0.663 1.620 sum -7.904 3.201 8.058 11.733 Atomic orbital electron populations 1.23971 0.95149 1.02814 0.98422 1.23257 0.96772 0.98348 1.01854 1.20483 0.91779 0.96143 0.89759 1.48173 1.15779 1.56830 1.11197 1.19171 0.77367 0.93513 0.97027 1.21518 0.93774 0.95571 1.46927 0.92277 1.25577 0.99666 0.97152 0.94975 1.69998 1.17196 1.19369 1.48975 0.85731 0.77977 0.79617 0.79153 1.18932 1.21242 1.19930 1.20187 0.86675 0.77726 0.83959 1.90578 1.24920 1.46030 1.83939 1.20081 0.94973 1.02295 0.90709 0.88480 1.22053 0.89708 0.94586 0.92306 1.86371 1.45155 1.52511 1.54341 1.19570 0.97052 0.95332 0.94666 1.20985 0.94970 0.98123 0.95796 1.21162 1.00450 0.98714 0.93175 1.20988 0.98644 0.97482 0.89741 1.98346 1.73413 1.98500 1.33662 1.21148 0.96261 0.98044 0.97654 1.21159 0.99199 0.98433 0.93544 0.86626 0.88117 0.87705 0.90177 0.89954 0.95455 0.95941 0.92405 0.91052 0.93205 0.75653 0.85564 0.83458 0.82957 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.39 14.31 67.78 0.97 -3.42 16 2 C -0.18 -5.74 9.85 25.65 0.25 -5.49 16 3 C 0.14 4.99 5.90 85.63 0.51 5.49 16 4 N -0.59 -23.81 2.44 -830.49 -2.03 -25.84 16 5 C 0.25 11.36 5.00 85.63 0.43 11.79 16 6 C -0.54 -26.03 7.11 25.60 0.18 -25.85 16 7 H 0.06 2.85 7.44 -2.91 -0.02 2.83 16 8 C 0.03 1.36 5.46 84.65 0.46 1.82 16 9 N -0.92 -48.58 13.29 21.45 0.28 -48.30 16 10 Si 0.95 39.39 29.54 68.60 2.03 41.42 16 11 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 12 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 14 C 0.53 21.03 6.73 87.66 0.59 21.62 16 15 O -0.57 -23.99 14.08 -3.02 -0.04 -24.04 16 16 C -0.06 -2.21 1.93 -12.29 -0.02 -2.23 16 17 H 0.10 3.89 5.80 -2.39 -0.01 3.87 16 18 C 0.09 3.25 6.29 71.98 0.45 3.70 16 19 O -0.58 -19.08 13.42 -148.98 -2.00 -21.08 16 20 C -0.07 -2.20 4.44 -19.86 -0.09 -2.29 16 21 C -0.08 -2.54 7.85 22.27 0.17 -2.36 16 22 C -0.12 -3.17 9.83 22.29 0.22 -2.95 16 23 C -0.04 -1.09 6.32 22.32 0.14 -0.95 16 24 Cl -0.07 -1.51 28.96 -2.72 -0.08 -1.59 16 25 C -0.11 -2.93 9.83 22.29 0.22 -2.71 16 26 C -0.11 -3.16 9.67 22.26 0.22 -2.94 16 27 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 28 H 0.10 2.56 7.86 -2.91 -0.02 2.54 16 29 H 0.10 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.08 2.82 6.93 -2.39 -0.02 2.81 16 31 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 32 H 0.03 1.32 5.88 -2.39 -0.01 1.31 16 33 H 0.02 1.09 8.05 -2.39 -0.02 1.07 16 34 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 35 H 0.07 2.86 5.17 -2.39 -0.01 2.85 16 36 H 0.05 1.63 7.20 -2.39 -0.02 1.61 16 37 H 0.39 9.43 9.12 -74.06 -0.68 8.75 16 38 H 0.13 4.08 6.81 -2.91 -0.02 4.06 16 39 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 40 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 41 H 0.14 3.81 7.94 -2.91 -0.02 3.79 16 Total: -1.00 -57.49 360.40 3.24 -54.25 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.38 Total: 31.94 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 4.70 Total: -6.76 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -1.74 Total: -74.14 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -2.04 Total: -45.11 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -57.49 3.24 -54.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359392580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.506 kcal (2) G-P(sol) polarization free energy of solvation -57.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds