Wall clock time and date at job start Tue Mar 31 2020 14:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31012 * 1 3 3 C 1.50698 * 119.99924 * 2 1 4 4 N 1.46497 * 109.46982 * 125.94720 * 3 2 1 5 5 C 1.46495 * 120.00505 * 265.15424 * 4 3 2 6 6 C 1.50697 * 109.47121 * 275.84268 * 5 4 3 7 7 H 1.08003 * 120.00297 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00193 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99791 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00093 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47141 * 90.00292 * 10 8 6 12 12 H 1.48507 * 109.46963 * 209.99954 * 10 8 6 13 13 H 1.48493 * 109.47429 * 330.00247 * 10 8 6 14 14 C 1.34776 * 119.99680 * 85.15681 * 4 3 2 15 15 O 1.21283 * 120.00265 * 5.19030 * 14 4 3 16 16 C 1.50705 * 120.00178 * 185.18944 * 14 4 3 17 17 H 1.08998 * 109.46636 * 45.22670 * 16 14 4 18 18 O 1.42901 * 109.47008 * 165.22204 * 16 14 4 19 19 C 1.53001 * 109.47059 * 285.22465 * 16 14 4 20 20 C 1.50701 * 109.46709 * 173.86485 * 19 16 14 21 21 C 1.38239 * 120.00688 * 265.01951 * 20 19 16 22 22 C 1.38218 * 120.01205 * 180.02562 * 21 20 19 23 23 C 1.38269 * 120.02305 * 359.70031 * 22 21 20 24 24 C 1.38188 * 120.01576 * 0.55554 * 23 22 21 25 25 C 1.38325 * 120.00285 * 85.00628 * 20 19 16 26 26 Cl 1.73594 * 120.01654 * 359.97438 * 25 20 19 27 27 H 1.07999 * 119.99721 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99795 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99795 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46908 * 5.94872 * 3 2 1 31 31 H 1.09001 * 109.47027 * 245.95277 * 3 2 1 32 32 H 1.09001 * 109.46536 * 35.83921 * 5 4 3 33 33 H 1.09000 * 109.47216 * 155.84012 * 5 4 3 34 34 H 0.96997 * 120.00253 * 179.97438 * 9 8 6 35 35 H 0.96699 * 113.99722 * 60.00450 * 18 16 14 36 36 H 1.09002 * 109.47070 * 53.86830 * 19 16 14 37 37 H 1.08997 * 109.47180 * 293.87029 * 19 16 14 38 38 H 1.08000 * 119.99369 * 359.97438 * 21 20 19 39 39 H 1.07997 * 119.98695 * 179.97438 * 22 21 20 40 40 H 1.08005 * 119.98930 * 180.29648 * 23 22 21 41 41 H 1.08001 * 120.00690 * 179.74590 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0099 1.3226 1.1182 5 6 2.6293 1.9410 2.3905 6 6 2.8781 3.4256 2.3217 7 1 3.2800 3.8647 1.4205 8 6 2.5926 4.2237 3.4093 9 7 2.1027 3.6892 4.5065 10 14 2.9018 6.0639 3.3242 11 1 1.6848 6.7474 2.8172 12 1 3.2274 6.5743 4.6803 13 1 4.0387 6.3331 2.4078 14 6 4.2309 0.7697 0.9763 15 8 4.5813 0.3422 -0.1032 16 6 5.1608 0.6828 2.1590 17 1 4.6093 0.3269 3.0293 18 8 6.2231 -0.2263 1.8639 19 6 5.7413 2.0673 2.4542 20 6 6.5508 2.0121 3.7242 21 6 5.9708 2.3613 4.9294 22 6 6.7132 2.3113 6.0942 23 6 8.0346 1.9061 6.0554 24 6 8.6171 1.5618 4.8505 25 6 7.8743 1.6118 3.6840 26 17 8.6030 1.1722 2.1710 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3600 2.1308 0.1065 31 1 2.6079 1.4104 -0.9385 32 1 1.5717 1.7582 2.5811 33 1 3.2235 1.5099 3.1962 34 1 1.9022 4.2505 5.2717 35 1 6.7573 0.0282 1.0991 36 1 4.9289 2.7843 2.5720 37 1 6.3818 2.3763 1.6281 38 1 4.9375 2.6741 4.9608 39 1 6.2598 2.5846 7.0355 40 1 8.6129 1.8626 6.9666 41 1 9.6504 1.2492 4.8198 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359420895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:48 Heat of formation + Delta-G solvation = -62.196418 kcal Electronic energy + Delta-G solvation = -25854.617166 eV Core-core repulsion = 22146.275853 eV Total energy + Delta-G solvation = -3708.341314 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.38989 -40.15637 -37.86820 -37.31190 -37.00950 -35.22878 -34.09741 -33.56824 -31.57053 -30.12955 -29.33933 -27.31371 -25.28247 -24.60001 -23.53015 -22.15386 -21.23849 -20.34557 -18.70135 -18.44435 -17.97013 -17.64511 -16.91660 -16.63627 -16.28247 -16.27053 -15.99668 -15.82872 -15.22198 -14.71312 -14.55439 -14.31214 -14.18005 -13.95058 -13.85783 -13.56246 -13.18839 -12.87585 -12.82016 -12.75612 -12.63281 -12.51274 -12.44197 -12.25843 -12.10141 -11.97477 -11.80430 -11.66738 -11.39606 -10.69721 -10.55449 -10.25608 -9.75460 -9.56286 -9.46652 -8.18463 -6.30098 0.27064 0.38439 1.25189 1.25783 1.41064 1.46278 1.51626 1.59853 2.31196 2.44951 2.75625 3.09959 3.32516 3.54019 3.86964 3.94103 4.03445 4.07906 4.12561 4.20303 4.23414 4.48253 4.50619 4.52698 4.76032 4.79223 4.82222 4.90953 5.01129 5.09538 5.16389 5.26922 5.35129 5.54057 5.59009 5.64165 5.66160 5.74604 5.88838 5.97113 6.05150 6.43502 6.55551 6.79358 7.17954 7.39550 8.86438 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.009837 B = 0.006110 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.796321 B = 4581.912318 C = 6535.266941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.183 4.183 3 C 0.141 3.859 4 N -0.587 5.587 5 C 0.249 3.751 6 C -0.541 4.541 7 H 0.054 0.946 8 C 0.042 3.958 9 N -0.903 5.903 10 Si 0.936 3.064 11 H -0.278 1.278 12 H -0.279 1.279 13 H -0.274 1.274 14 C 0.485 3.515 15 O -0.588 6.588 16 C 0.116 3.884 17 H 0.116 0.884 18 O -0.541 6.541 19 C -0.125 4.125 20 C -0.075 4.075 21 C -0.112 4.112 22 C -0.118 4.118 23 C -0.106 4.106 24 C -0.117 4.117 25 C -0.035 4.035 26 Cl -0.071 7.071 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.021 0.979 33 H 0.036 0.964 34 H 0.269 0.731 35 H 0.377 0.623 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.145 0.855 40 H 0.164 0.836 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.304 -2.905 2.244 8.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C 0.019 3.981 4 N -0.318 5.318 5 C 0.129 3.871 6 C -0.579 4.579 7 H 0.072 0.928 8 C -0.160 4.160 9 N -0.541 5.541 10 Si 0.763 3.237 11 H -0.204 1.204 12 H -0.204 1.204 13 H -0.199 1.199 14 C 0.273 3.727 15 O -0.471 6.471 16 C 0.054 3.946 17 H 0.133 0.867 18 O -0.348 6.348 19 C -0.162 4.162 20 C -0.076 4.076 21 C -0.131 4.131 22 C -0.136 4.136 23 C -0.124 4.124 24 C -0.136 4.136 25 C -0.061 4.061 26 Cl -0.042 7.042 27 H 0.136 0.864 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.182 0.818 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.241 -3.420 2.261 8.321 hybrid contribution -0.005 1.285 -0.740 1.483 sum 7.235 -2.134 1.521 7.695 Atomic orbital electron populations 1.24029 0.94859 1.03146 0.98061 1.23179 0.96836 0.97927 1.02227 1.20503 0.91682 0.96162 0.89741 1.48268 1.13178 1.54771 1.15547 1.19253 0.96060 0.92140 0.79677 1.21455 1.43928 0.92720 0.99810 0.92809 1.25361 0.94342 1.01437 0.94906 1.69976 1.43045 1.37024 1.04009 0.85883 0.78520 0.81712 0.77635 1.20430 1.20450 1.19874 1.21710 0.83208 0.77116 0.90632 1.90574 1.76402 1.51251 1.28847 1.21598 0.87382 0.90908 0.94699 0.86673 1.86551 1.44227 1.50960 1.53021 1.21538 1.01587 0.97739 0.95373 1.19580 0.92721 0.99768 0.95560 1.21306 1.00675 0.99047 0.92051 1.21513 0.94857 0.98861 0.98384 1.21449 0.94864 0.97928 0.98183 1.21301 1.00958 1.00739 0.90567 1.20952 0.93437 1.03860 0.87891 1.98309 1.82139 1.91353 1.32425 0.86437 0.87543 0.88710 0.89354 0.91060 0.96051 0.94599 0.92149 0.77231 0.86130 0.90988 0.86013 0.83701 0.81833 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 14.32 67.77 0.97 -3.40 16 2 C -0.18 -5.97 9.81 25.63 0.25 -5.72 16 3 C 0.14 5.23 5.86 85.63 0.50 5.74 16 4 N -0.59 -24.30 2.45 -830.52 -2.04 -26.33 16 5 C 0.25 11.12 4.65 85.63 0.40 11.52 16 6 C -0.54 -25.64 6.84 25.60 0.18 -25.46 16 7 H 0.05 2.64 7.81 -2.91 -0.02 2.61 16 8 C 0.04 2.01 5.46 84.66 0.46 2.47 16 9 N -0.90 -44.71 13.29 21.45 0.28 -44.42 16 10 Si 0.94 39.05 29.54 68.60 2.03 41.07 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 13 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 14 C 0.49 20.45 6.95 87.66 0.61 21.06 16 15 O -0.59 -26.90 15.94 15.57 0.25 -26.66 16 16 C 0.12 4.48 2.52 29.85 0.08 4.56 16 17 H 0.12 4.54 6.81 -2.39 -0.02 4.52 16 18 O -0.54 -20.08 11.20 -130.37 -1.46 -21.54 16 19 C -0.12 -4.69 4.41 29.85 0.13 -4.56 16 20 C -0.08 -2.58 5.04 -19.84 -0.10 -2.68 16 21 C -0.11 -3.77 9.68 22.27 0.22 -3.55 16 22 C -0.12 -3.10 10.05 22.27 0.22 -2.88 16 23 C -0.11 -2.33 10.05 22.27 0.22 -2.10 16 24 C -0.12 -2.84 9.83 22.29 0.22 -2.62 16 25 C -0.03 -1.05 6.08 22.32 0.14 -0.91 16 26 Cl -0.07 -2.03 24.31 -2.72 -0.07 -2.09 16 27 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 28 H 0.11 2.68 7.84 -2.91 -0.02 2.66 16 29 H 0.09 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.09 3.17 7.69 -2.39 -0.02 3.15 16 31 H 0.07 2.70 7.50 -2.39 -0.02 2.68 16 32 H 0.02 1.02 8.11 -2.39 -0.02 1.00 16 33 H 0.04 1.65 5.61 -2.39 -0.01 1.64 16 34 H 0.27 12.76 8.31 -92.71 -0.77 11.99 16 35 H 0.38 13.28 7.02 -74.06 -0.52 12.76 16 36 H 0.12 5.10 4.25 -2.39 -0.01 5.09 16 37 H 0.07 2.66 7.13 -2.39 -0.02 2.65 16 38 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 40 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 41 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -55.41 356.02 4.02 -51.39 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: 0.53 Total: 37.11 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 4.49 Total: -8.53 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -1.75 Total: -70.76 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -1.21 Total: -48.20 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.07 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.07 Total: -2.09 kcal Total: -55.41 4.02 -51.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359420895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.805 kcal (2) G-P(sol) polarization free energy of solvation -55.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds