Wall clock time and date at job start Tue Mar 31 2020 14:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00394 * 2 1 4 4 N 1.46497 * 109.46738 * 124.99909 * 3 2 1 5 5 C 1.46505 * 120.00008 * 268.83707 * 4 3 2 6 6 C 1.50700 * 109.46972 * 270.00300 * 5 4 3 7 7 H 1.08001 * 120.00444 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00127 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99842 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00226 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47123 * 60.00132 * 10 8 6 12 12 H 1.48500 * 109.46876 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46911 * 299.99905 * 10 8 6 14 14 C 1.34777 * 120.00150 * 88.84393 * 4 3 2 15 15 O 1.21273 * 119.99952 * 175.10327 * 14 4 3 16 16 C 1.50699 * 119.99585 * 355.37456 * 14 4 3 17 17 H 1.08999 * 109.47460 * 318.67028 * 16 14 4 18 18 O 1.42902 * 109.47118 * 198.67267 * 16 14 4 19 19 C 1.53005 * 109.46942 * 78.67420 * 16 14 4 20 20 C 1.50702 * 109.46928 * 182.13102 * 19 16 14 21 21 C 1.38239 * 120.00563 * 264.72157 * 20 19 16 22 22 C 1.38219 * 120.01312 * 179.76816 * 21 20 19 23 23 C 1.38261 * 120.02447 * 0.50855 * 22 21 20 24 24 C 1.38192 * 120.01517 * 359.74590 * 23 22 21 25 25 C 1.38335 * 120.00912 * 84.99681 * 20 19 16 26 26 Cl 1.73595 * 120.00955 * 359.95596 * 25 20 19 27 27 H 1.07998 * 119.99921 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00024 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99246 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46738 * 4.99949 * 3 2 1 31 31 H 1.08997 * 109.47142 * 244.99891 * 3 2 1 32 32 H 1.08997 * 109.46914 * 29.99988 * 5 4 3 33 33 H 1.08995 * 109.46831 * 150.00651 * 5 4 3 34 34 H 0.96997 * 120.00117 * 180.02562 * 9 8 6 35 35 H 0.96706 * 113.99885 * 300.00217 * 18 16 14 36 36 H 1.08999 * 109.46825 * 302.12317 * 19 16 14 37 37 H 1.08995 * 109.47234 * 62.12730 * 19 16 14 38 38 H 1.07998 * 119.98960 * 0.02562 * 21 20 19 39 39 H 1.07997 * 119.98513 * 180.22813 * 22 21 20 40 40 H 1.08002 * 119.99392 * 179.76331 * 23 22 21 41 41 H 1.07997 * 120.00508 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3317 1.1314 5 6 2.5669 1.8881 2.4177 6 6 2.8756 3.3627 2.4544 7 1 3.3426 3.8380 1.6044 8 6 2.5608 4.1054 3.5726 9 7 1.9917 3.5268 4.6075 10 14 2.9427 5.9334 3.6178 11 1 2.2181 6.6178 2.5170 12 1 2.5102 6.4973 4.9216 13 1 4.4041 6.1380 3.4509 14 6 4.2423 0.8445 0.9890 15 8 5.0403 0.9467 1.8965 16 6 4.6485 0.1781 -0.3002 17 1 3.8354 -0.4561 -0.6533 18 8 5.8128 -0.6200 -0.0776 19 6 4.9559 1.2463 -1.3516 20 6 5.3114 0.5800 -2.6557 21 6 6.6368 0.3582 -2.9799 22 6 6.9628 -0.2573 -4.1738 23 6 5.9641 -0.6421 -5.0491 24 6 4.6390 -0.4162 -4.7284 25 6 4.3117 0.1951 -3.5311 26 17 2.6474 0.4787 -3.1272 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6214 1.4025 -0.9313 32 1 1.4943 1.7383 2.5404 33 1 3.0988 1.3854 3.2254 34 1 1.7699 4.0493 5.3940 35 1 6.5778 -0.1201 0.2387 36 1 4.0795 1.8788 -1.4938 37 1 5.7938 1.8568 -1.0152 38 1 7.4174 0.6623 -2.2984 39 1 7.9983 -0.4336 -4.4250 40 1 6.2196 -1.1195 -5.9835 41 1 3.8591 -0.7172 -5.4121 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359420901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:51 Heat of formation + Delta-G solvation = -45.623250 kcal Electronic energy + Delta-G solvation = -25455.448194 eV Core-core repulsion = 21747.825546 eV Total energy + Delta-G solvation = -3707.622647 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12995 -39.12622 -36.61401 -36.47787 -35.63508 -33.19897 -33.05136 -32.04469 -30.93015 -29.34890 -27.34560 -25.73491 -24.49322 -22.90264 -22.47750 -21.40949 -19.91143 -19.02885 -17.29824 -17.05935 -16.69041 -16.40476 -15.67964 -15.50233 -15.39762 -14.73628 -14.61116 -14.16636 -13.97256 -13.87562 -13.48378 -13.28084 -13.18503 -12.73777 -12.33040 -12.25031 -11.82298 -11.71523 -11.53630 -11.44840 -11.33130 -11.24945 -11.05485 -10.92327 -10.73904 -10.63159 -10.54685 -10.20007 -9.67261 -9.18095 -9.12104 -8.92990 -8.64337 -8.43940 -7.74115 -6.05042 -4.09992 0.95593 1.07364 2.00245 2.45081 3.17890 3.30905 3.35504 3.38386 3.46797 3.88652 4.35116 4.43697 4.53803 4.63850 4.74072 4.95033 4.99888 5.07131 5.10487 5.21437 5.28877 5.31588 5.40325 5.44989 5.49421 5.67594 5.77618 5.88951 6.00834 6.04674 6.17431 6.18928 6.26344 6.59666 6.79904 6.89864 7.04201 7.40994 7.49726 7.67018 7.90440 8.21500 8.33149 8.84321 8.99339 9.54692 11.03151 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015314 B = 0.004029 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.991398 B = 6947.818369 C = 7559.105403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.168 4.168 3 C 0.121 3.879 4 N -0.586 5.586 5 C 0.247 3.753 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.479 3.521 15 O -0.532 6.532 16 C 0.097 3.903 17 H 0.117 0.883 18 O -0.539 6.539 19 C -0.120 4.120 20 C -0.058 4.058 21 C -0.094 4.094 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.110 4.110 25 C -0.037 4.037 26 Cl -0.060 7.060 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.381 0.619 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 -8.192 -20.437 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.187 4.187 3 C -0.002 4.002 4 N -0.318 5.318 5 C 0.128 3.872 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.265 3.735 15 O -0.410 6.410 16 C 0.034 3.966 17 H 0.135 0.865 18 O -0.344 6.344 19 C -0.158 4.158 20 C -0.059 4.059 21 C -0.112 4.112 22 C -0.132 4.132 23 C -0.134 4.134 24 C -0.129 4.129 25 C -0.064 4.064 26 Cl -0.031 7.031 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.229 0.771 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.843 -8.533 -19.892 21.983 hybrid contribution 0.191 1.453 0.316 1.499 sum 4.034 -7.079 -19.576 21.204 Atomic orbital electron populations 1.23806 0.95771 1.01769 1.00574 1.23401 0.96458 0.98930 0.99904 1.20955 0.93495 0.95585 0.90201 1.48250 1.10942 1.58547 1.14018 1.19309 0.95547 0.93551 0.78822 1.21368 1.40353 0.93385 1.01426 0.92494 1.24929 0.95039 0.98766 0.95288 1.69924 1.41821 1.36296 1.05257 0.86570 0.78871 0.84860 0.77192 1.20233 1.21162 1.20182 1.21088 0.83044 0.79745 0.89655 1.90681 1.50383 1.57507 1.42390 1.21884 0.89971 0.93007 0.91730 0.86535 1.86545 1.21768 1.37546 1.88552 1.21448 1.04623 0.98000 0.91693 1.19571 0.92593 0.98614 0.95121 1.21030 0.95004 0.98316 0.96822 1.21230 0.99694 0.98143 0.94155 1.21085 0.92057 1.00270 0.99941 1.21017 0.97284 0.99146 0.95404 1.20908 0.85575 1.03443 0.96481 1.98388 1.16682 1.94712 1.93280 0.88324 0.88681 0.87737 0.89319 0.89910 0.94834 0.93981 0.92645 0.77081 0.88350 0.89203 0.85079 0.85479 0.85331 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 14.32 29.01 0.42 -2.02 16 2 C -0.17 -2.49 9.24 -36.03 -0.33 -2.83 16 3 C 0.12 2.03 5.45 -5.20 -0.03 2.01 16 4 N -0.59 -12.43 2.44 -176.44 -0.43 -12.86 16 5 C 0.25 6.47 5.12 -5.19 -0.03 6.45 16 6 C -0.53 -14.83 9.39 -34.44 -0.32 -15.16 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 10 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.48 9.96 6.94 -10.99 -0.08 9.89 16 15 O -0.53 -13.27 15.95 -13.59 -0.22 -13.49 16 16 C 0.10 1.53 2.58 -27.88 -0.07 1.45 16 17 H 0.12 1.77 6.14 -51.93 -0.32 1.45 16 18 O -0.54 -8.32 12.69 -54.39 -0.69 -9.01 16 19 C -0.12 -1.61 4.30 -27.88 -0.12 -1.73 16 20 C -0.06 -0.68 4.86 -104.58 -0.51 -1.19 16 21 C -0.09 -0.95 9.56 -39.59 -0.38 -1.32 16 22 C -0.11 -0.98 10.05 -39.58 -0.40 -1.37 16 23 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 24 C -0.11 -1.03 9.83 -39.55 -0.39 -1.42 16 25 C -0.04 -0.42 6.31 -39.50 -0.25 -0.67 16 26 Cl -0.06 -0.68 25.03 -51.86 -1.30 -1.98 16 27 H 0.10 1.30 7.84 -52.49 -0.41 0.89 16 28 H 0.09 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.10 1.51 7.37 -52.49 -0.39 1.12 16 30 H 0.09 1.55 7.71 -51.93 -0.40 1.15 16 31 H 0.08 1.22 2.19 -51.93 -0.11 1.11 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.04 1.25 7.49 -51.93 -0.39 0.86 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.38 5.10 8.66 45.56 0.39 5.49 16 36 H 0.10 1.36 5.09 -51.93 -0.26 1.09 16 37 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -33.31 358.75 -8.88 -42.19 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.39 Total: 6.44 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.98 Total: -7.60 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.31 Total: -38.71 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.91 Total: -22.50 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.30 Total: -1.98 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.31 -8.88 -42.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359420901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.432 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds