Wall clock time and date at job start Tue Mar 31 2020 14:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99695 * 2 1 4 4 N 1.46501 * 109.46865 * 124.99884 * 3 2 1 5 5 C 1.46504 * 119.99664 * 273.97282 * 4 3 2 6 6 C 1.50703 * 109.47201 * 270.00313 * 5 4 3 7 7 H 1.08000 * 120.00008 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99570 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00300 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99823 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46938 * 59.99645 * 10 8 6 12 12 H 1.48495 * 109.46991 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46961 * 299.99781 * 10 8 6 14 14 C 1.34772 * 120.00261 * 93.98141 * 4 3 2 15 15 O 1.21603 * 120.00318 * 175.32098 * 14 4 3 16 16 C 1.47431 * 119.99979 * 355.31140 * 14 4 3 17 17 C 1.39770 * 120.19712 * 59.61228 * 16 14 4 18 18 C 1.37927 * 119.89962 * 180.29843 * 17 16 14 19 19 F 1.35109 * 119.84750 * 179.70285 * 18 17 16 20 20 C 1.38783 * 120.30137 * 359.67590 * 18 17 16 21 21 C 1.37960 * 120.39935 * 0.02562 * 20 18 17 22 22 N 1.48020 * 119.95193 * 180.02562 * 21 20 18 23 23 O 1.21808 * 120.00322 * 6.87155 * 22 21 20 24 24 O 1.21795 * 120.00314 * 186.87772 * 22 21 20 25 25 C 1.38920 * 120.09387 * 0.02562 * 21 20 18 26 26 N 1.38998 * 120.15046 * 180.02562 * 25 21 20 27 27 H 1.08003 * 119.99885 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.00018 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00018 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47471 * 4.99547 * 3 2 1 31 31 H 1.09004 * 109.46634 * 244.99240 * 3 2 1 32 32 H 1.09001 * 109.47330 * 30.00794 * 5 4 3 33 33 H 1.09000 * 109.46697 * 150.00619 * 5 4 3 34 34 H 0.96998 * 119.99904 * 179.97438 * 9 8 6 35 35 H 1.08002 * 120.04364 * 0.02562 * 17 16 14 36 36 H 1.08005 * 119.79867 * 180.02562 * 20 18 17 37 37 H 0.97004 * 120.00036 * 25.10530 * 26 25 21 38 38 H 0.97001 * 120.00043 * 204.81748 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5339 1.7835 2.4471 6 6 2.7398 3.2715 2.5677 7 1 3.1697 3.8255 1.7464 8 6 2.3793 3.9256 3.7267 9 7 1.8553 3.2510 4.7267 10 14 2.6338 5.7702 3.8760 11 1 1.8587 6.4642 2.8164 12 1 2.1679 6.2278 5.2096 13 1 4.0767 6.0850 3.7204 14 6 4.2724 0.9413 0.9620 15 8 5.0659 1.0435 1.8778 16 6 4.7092 0.3899 -0.3336 17 6 4.6024 1.1580 -1.4965 18 6 5.0072 0.6338 -2.7063 19 9 4.8980 1.3751 -3.8306 20 6 5.5268 -0.6513 -2.7739 21 6 5.6434 -1.4181 -1.6330 22 7 6.1994 -2.7873 -1.7165 23 8 6.6687 -3.1913 -2.7654 24 8 6.1877 -3.5102 -0.7363 25 6 5.2398 -0.9069 -0.4059 26 7 5.3573 -1.6782 0.7444 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4747 1.5528 2.5608 33 1 3.1022 1.2739 3.2252 34 1 1.6021 3.7112 5.5422 35 1 4.1995 2.1589 -1.4483 36 1 5.8416 -1.0536 -3.7256 37 1 6.0189 -2.3864 0.7881 38 1 4.7807 -1.5057 1.5051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359420914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:23 Heat of formation + Delta-G solvation = -19.962744 kcal Electronic energy + Delta-G solvation = -27521.208666 eV Core-core repulsion = 23282.822023 eV Total energy + Delta-G solvation = -4238.386643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.18780 -42.41733 -40.47370 -38.37811 -36.89641 -36.02713 -34.73541 -33.37852 -32.62963 -32.01542 -29.42105 -27.74954 -26.72687 -25.80269 -24.41497 -22.90419 -22.41743 -20.36104 -19.85499 -18.99424 -18.48536 -18.00192 -17.73722 -17.45587 -16.83318 -16.61980 -16.43305 -15.99283 -15.74677 -15.54442 -14.77917 -14.52674 -14.33194 -13.81894 -13.63631 -13.40152 -13.03252 -12.89066 -12.36536 -12.28054 -11.86135 -11.70318 -11.46953 -11.38305 -11.31092 -11.23613 -11.03419 -10.80225 -10.73640 -10.34274 -9.97732 -9.81341 -9.43096 -9.26438 -8.55964 -8.22018 -7.98313 -6.17628 -4.23338 -0.38420 0.57606 1.04344 1.16727 2.29356 2.62984 3.06501 3.23770 3.25851 3.29125 3.31416 3.51671 3.79527 4.10442 4.30085 4.33299 4.46250 4.65655 4.95687 5.01288 5.12684 5.17786 5.24389 5.34452 5.40377 5.46871 5.86419 5.94951 6.01147 6.24126 6.65332 6.71271 6.82292 6.86139 7.17414 7.27784 7.31677 7.51684 7.76593 8.02909 8.05852 8.56118 8.80948 9.42286 10.90491 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.003798 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.787162 B = 7369.643306 C = 7575.160834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.171 4.171 3 C 0.125 3.875 4 N -0.578 5.578 5 C 0.248 3.752 6 C -0.532 4.532 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.550 3.450 15 O -0.515 6.515 16 C -0.158 4.158 17 C -0.031 4.031 18 C 0.048 3.952 19 F -0.126 7.126 20 C -0.040 4.040 21 C -0.104 4.104 22 N 0.052 4.948 23 O -0.162 6.162 24 O -0.183 6.183 25 C 0.314 3.686 26 N -0.828 5.828 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.265 0.735 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.418 0.582 38 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 -8.132 -14.315 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.190 4.190 3 C 0.002 3.998 4 N -0.308 5.308 5 C 0.130 3.870 6 C -0.570 4.570 7 H 0.076 0.924 8 C -0.138 4.138 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.335 3.665 15 O -0.392 6.392 16 C -0.167 4.167 17 C -0.051 4.051 18 C 0.026 3.974 19 F -0.105 7.105 20 C -0.060 4.060 21 C -0.195 4.195 22 N 0.564 4.436 23 O -0.377 6.377 24 O -0.388 6.388 25 C 0.196 3.804 26 N -0.372 5.372 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.180 0.820 36 H 0.183 0.817 37 H 0.256 0.744 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.904 -7.462 -13.515 15.555 hybrid contribution 0.203 0.634 0.155 0.684 sum 2.107 -6.828 -13.360 15.151 Atomic orbital electron populations 1.23852 0.95759 1.01974 0.99682 1.23297 0.96408 0.98627 1.00704 1.20877 0.93228 0.95966 0.89765 1.48275 1.07805 1.61853 1.12850 1.19387 0.95490 0.95120 0.77012 1.21326 1.42224 0.92502 1.00993 0.92370 1.24913 0.94821 0.98722 0.95382 1.69909 1.41870 1.36184 1.05127 0.86551 0.78748 0.84818 0.77291 1.20168 1.21102 1.20113 1.17606 0.83339 0.79726 0.85863 1.90859 1.51848 1.54751 1.41703 1.19751 1.08631 0.92227 0.96071 1.21550 0.93128 1.00976 0.89461 1.16704 1.07520 0.90091 0.83130 1.91565 1.94477 1.75571 1.48849 1.20670 0.94675 0.92030 0.98675 1.20078 1.19318 0.85527 0.94619 1.43210 0.98090 1.02048 1.00238 1.94537 1.46551 1.78049 1.18606 1.94352 1.62710 1.53987 1.27788 1.17159 0.88810 0.88870 0.85515 1.43112 1.41858 1.37865 1.14346 0.88628 0.88075 0.88074 0.88861 0.90409 0.94396 0.93767 0.92498 0.82028 0.81732 0.74357 0.75419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 14.32 29.01 0.42 -1.66 16 2 C -0.17 -2.22 9.85 -36.03 -0.35 -2.58 16 3 C 0.12 1.80 5.66 -5.19 -0.03 1.77 16 4 N -0.58 -10.72 2.44 -177.70 -0.43 -11.15 16 5 C 0.25 5.88 5.14 -5.19 -0.03 5.86 16 6 C -0.53 -13.98 9.39 -34.44 -0.32 -14.30 16 7 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 10 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.55 10.04 6.18 -12.52 -0.08 9.96 16 15 O -0.52 -11.54 16.35 5.27 0.09 -11.45 16 16 C -0.16 -2.21 4.99 -104.80 -0.52 -2.74 16 17 C -0.03 -0.36 7.57 -39.12 -0.30 -0.66 16 18 C 0.05 0.50 7.28 -39.49 -0.29 0.22 16 19 F -0.13 -1.32 17.26 2.25 0.04 -1.28 16 20 C -0.04 -0.42 9.52 -39.48 -0.38 -0.79 16 21 C -0.10 -1.27 6.85 -79.79 -0.55 -1.82 16 22 N 0.05 0.68 4.45 34.04 0.15 0.83 16 23 O -0.16 -2.18 18.45 -29.46 -0.54 -2.72 16 24 O -0.18 -2.47 15.89 -29.46 -0.47 -2.93 16 25 C 0.31 4.11 6.75 -83.58 -0.56 3.54 16 26 N -0.83 -10.40 8.14 32.56 0.27 -10.14 16 27 H 0.10 0.99 8.06 -52.48 -0.42 0.57 16 28 H 0.10 1.17 7.84 -52.49 -0.41 0.76 16 29 H 0.10 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.09 1.39 7.75 -51.93 -0.40 0.99 16 31 H 0.08 0.93 4.23 -51.93 -0.22 0.71 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.04 1.18 7.49 -51.93 -0.39 0.79 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.16 1.72 7.29 -52.49 -0.38 1.33 16 36 H 0.17 1.39 7.61 -52.48 -0.40 1.00 16 37 H 0.42 4.85 6.12 -40.82 -0.25 4.60 16 38 H 0.41 5.35 7.84 -40.82 -0.32 5.03 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -30.15 342.56 -6.70 -36.85 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -3.58 Total: 7.01 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -3.09 Total: -1.56 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.72 Total: -44.87 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.93 Total: -17.11 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.15 -6.70 -36.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359420914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.883 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds