Wall clock time and date at job start Tue Mar 31 2020 14:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99695 * 2 1 4 4 N 1.46501 * 109.46865 * 124.99884 * 3 2 1 5 5 C 1.46504 * 119.99664 * 273.97282 * 4 3 2 6 6 C 1.50703 * 109.47201 * 270.00313 * 5 4 3 7 7 H 1.08000 * 120.00008 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99570 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00300 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99823 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46938 * 59.99645 * 10 8 6 12 12 H 1.48495 * 109.46991 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46961 * 299.99781 * 10 8 6 14 14 C 1.34772 * 120.00261 * 93.98141 * 4 3 2 15 15 O 1.21603 * 120.00318 * 175.32098 * 14 4 3 16 16 C 1.47431 * 119.99979 * 355.31140 * 14 4 3 17 17 C 1.39770 * 120.19712 * 59.61228 * 16 14 4 18 18 C 1.37927 * 119.89962 * 180.29843 * 17 16 14 19 19 F 1.35109 * 119.84750 * 179.70285 * 18 17 16 20 20 C 1.38783 * 120.30137 * 359.67590 * 18 17 16 21 21 C 1.37960 * 120.39935 * 0.02562 * 20 18 17 22 22 N 1.48020 * 119.95193 * 180.02562 * 21 20 18 23 23 O 1.21808 * 120.00322 * 6.87155 * 22 21 20 24 24 O 1.21795 * 120.00314 * 186.87772 * 22 21 20 25 25 C 1.38920 * 120.09387 * 0.02562 * 21 20 18 26 26 N 1.38998 * 120.15046 * 180.02562 * 25 21 20 27 27 H 1.08003 * 119.99885 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.00018 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00018 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47471 * 4.99547 * 3 2 1 31 31 H 1.09004 * 109.46634 * 244.99240 * 3 2 1 32 32 H 1.09001 * 109.47330 * 30.00794 * 5 4 3 33 33 H 1.09000 * 109.46697 * 150.00619 * 5 4 3 34 34 H 0.96998 * 119.99904 * 179.97438 * 9 8 6 35 35 H 1.08002 * 120.04364 * 0.02562 * 17 16 14 36 36 H 1.08005 * 119.79867 * 180.02562 * 20 18 17 37 37 H 0.97004 * 120.00036 * 25.10530 * 26 25 21 38 38 H 0.97001 * 120.00043 * 204.81748 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5339 1.7835 2.4471 6 6 2.7398 3.2715 2.5677 7 1 3.1697 3.8255 1.7464 8 6 2.3793 3.9256 3.7267 9 7 1.8553 3.2510 4.7267 10 14 2.6338 5.7702 3.8760 11 1 1.8587 6.4642 2.8164 12 1 2.1679 6.2278 5.2096 13 1 4.0767 6.0850 3.7204 14 6 4.2724 0.9413 0.9620 15 8 5.0659 1.0435 1.8778 16 6 4.7092 0.3899 -0.3336 17 6 4.6024 1.1580 -1.4965 18 6 5.0072 0.6338 -2.7063 19 9 4.8980 1.3751 -3.8306 20 6 5.5268 -0.6513 -2.7739 21 6 5.6434 -1.4181 -1.6330 22 7 6.1994 -2.7873 -1.7165 23 8 6.6687 -3.1913 -2.7654 24 8 6.1877 -3.5102 -0.7363 25 6 5.2398 -0.9069 -0.4059 26 7 5.3573 -1.6782 0.7444 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4747 1.5528 2.5608 33 1 3.1022 1.2739 3.2252 34 1 1.6021 3.7112 5.5422 35 1 4.1995 2.1589 -1.4483 36 1 5.8416 -1.0536 -3.7256 37 1 6.0189 -2.3864 0.7881 38 1 4.7807 -1.5057 1.5051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359420914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:22 Heat of formation + Delta-G solvation = -37.524590 kcal Electronic energy + Delta-G solvation = -27521.970205 eV Core-core repulsion = 23282.822023 eV Total energy + Delta-G solvation = -4239.148182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.04269 -43.43107 -41.68903 -39.64108 -37.92133 -37.40945 -35.74072 -35.14812 -33.83208 -33.36751 -30.52685 -29.43116 -27.75674 -27.02472 -25.92956 -24.15629 -23.65526 -21.53107 -20.91380 -20.02757 -19.71960 -19.01067 -18.76086 -18.57415 -18.41397 -17.99407 -17.66253 -17.18469 -16.75377 -16.61719 -16.31486 -15.91088 -15.66639 -14.79753 -14.75139 -14.62840 -14.32344 -14.17921 -13.99816 -13.37777 -13.34253 -13.02431 -12.90577 -12.74178 -12.59586 -12.41424 -12.34811 -12.29904 -12.22744 -11.75637 -11.71113 -11.11603 -10.80796 -10.63367 -10.31578 -9.61298 -9.18472 -8.22747 -6.36407 -1.37512 -0.40418 0.04651 0.16751 1.24962 1.38047 1.41600 1.44214 1.49937 1.90700 2.16077 2.29451 2.40510 2.83331 3.02606 3.09324 3.34547 3.46024 3.67095 3.90160 4.05163 4.11639 4.17139 4.31398 4.43865 4.49379 4.77696 4.97049 5.01090 5.01629 5.19024 5.26935 5.43380 5.66795 5.71818 5.80807 5.87716 6.03386 6.30088 6.48043 6.53001 6.71522 7.11873 7.35312 8.84311 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.003798 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.787162 B = 7369.643306 C = 7575.160834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.187 4.187 3 C 0.123 3.877 4 N -0.580 5.580 5 C 0.266 3.734 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.013 3.987 9 N -0.926 5.926 10 Si 0.962 3.038 11 H -0.260 1.260 12 H -0.282 1.282 13 H -0.278 1.278 14 C 0.554 3.446 15 O -0.567 6.567 16 C -0.173 4.173 17 C -0.019 4.019 18 C 0.061 3.939 19 F -0.119 7.119 20 C -0.018 4.018 21 C -0.107 4.107 22 N 0.052 4.948 23 O -0.158 6.158 24 O -0.199 6.199 25 C 0.312 3.688 26 N -0.829 5.829 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.028 0.972 33 H 0.004 0.996 34 H 0.267 0.733 35 H 0.174 0.826 36 H 0.191 0.809 37 H 0.421 0.579 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -7.669 -16.993 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.206 4.206 3 C 0.001 3.999 4 N -0.309 5.309 5 C 0.145 3.855 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.187 4.187 9 N -0.566 5.566 10 Si 0.786 3.214 11 H -0.185 1.185 12 H -0.207 1.207 13 H -0.204 1.204 14 C 0.341 3.659 15 O -0.447 6.447 16 C -0.182 4.182 17 C -0.040 4.040 18 C 0.038 3.962 19 F -0.098 7.098 20 C -0.038 4.038 21 C -0.198 4.198 22 N 0.563 4.437 23 O -0.375 6.375 24 O -0.401 6.401 25 C 0.194 3.806 26 N -0.372 5.372 27 H 0.132 0.868 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.046 0.954 33 H 0.022 0.978 34 H 0.076 0.924 35 H 0.191 0.809 36 H 0.208 0.792 37 H 0.260 0.740 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.731 -7.024 -16.227 17.766 hybrid contribution 0.238 0.446 0.896 1.028 sum 1.969 -6.579 -15.331 16.799 Atomic orbital electron populations 1.24072 0.95446 1.03041 0.97535 1.23208 0.96797 0.97968 1.02603 1.21088 0.92861 0.96741 0.89162 1.48160 1.08886 1.61627 1.12222 1.18803 0.94093 0.93714 0.78897 1.21654 1.41696 0.93775 1.01019 0.92442 1.25758 0.94578 1.03205 0.95116 1.70027 1.42949 1.37932 1.05643 0.85556 0.78450 0.79626 0.77738 1.18458 1.20732 1.20404 1.18066 0.82463 0.78544 0.86838 1.90821 1.53154 1.56710 1.44007 1.19172 1.11370 0.93098 0.94541 1.21619 0.92216 1.01057 0.89068 1.16473 1.06993 0.89968 0.82730 1.91597 1.94383 1.75433 1.48367 1.20938 0.92464 0.91398 0.99004 1.20061 1.19680 0.85305 0.94732 1.43300 0.98002 1.02292 1.00128 1.94525 1.46294 1.78187 1.18522 1.94364 1.63395 1.54393 1.27928 1.17187 0.88789 0.88628 0.85975 1.43136 1.41853 1.37918 1.14286 0.86763 0.87821 0.87694 0.89446 0.87706 0.95411 0.97770 0.92448 0.80874 0.79152 0.73953 0.75907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 14.32 67.78 0.97 -2.63 16 2 C -0.19 -4.64 9.85 25.64 0.25 -4.39 16 3 C 0.12 3.45 5.66 85.63 0.48 3.94 16 4 N -0.58 -21.92 2.44 -834.38 -2.04 -23.95 16 5 C 0.27 13.10 5.14 85.63 0.44 13.54 16 6 C -0.54 -29.11 9.39 25.60 0.24 -28.87 16 7 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 8 C 0.01 0.71 5.46 84.65 0.46 1.17 16 9 N -0.93 -53.42 13.29 21.45 0.28 -53.13 16 10 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 11 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 C 0.55 20.62 6.18 86.67 0.54 21.15 16 15 O -0.57 -26.53 16.35 -4.04 -0.07 -26.59 16 16 C -0.17 -4.70 4.99 -19.98 -0.10 -4.80 16 17 C -0.02 -0.41 7.57 22.57 0.17 -0.24 16 18 C 0.06 1.07 7.28 22.33 0.16 1.23 16 19 F -0.12 -2.03 17.26 44.97 0.78 -1.26 16 20 C -0.02 -0.31 9.52 22.33 0.21 -0.10 16 21 C -0.11 -2.37 6.85 36.47 0.25 -2.12 16 22 N 0.05 1.27 4.45 -46.23 -0.21 1.07 16 23 O -0.16 -3.87 18.45 18.88 0.35 -3.52 16 24 O -0.20 -5.19 15.89 18.89 0.30 -4.89 16 25 C 0.31 7.88 6.75 38.67 0.26 8.14 16 26 N -0.83 -21.08 8.14 -50.92 -0.41 -21.49 16 27 H 0.11 2.10 8.06 -2.91 -0.02 2.07 16 28 H 0.10 2.23 7.84 -2.91 -0.02 2.21 16 29 H 0.11 2.54 8.06 -2.91 -0.02 2.51 16 30 H 0.09 2.54 7.75 -2.39 -0.02 2.52 16 31 H 0.11 2.31 4.23 -2.38 -0.01 2.30 16 32 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 33 H 0.00 0.24 7.49 -2.39 -0.02 0.22 16 34 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.17 3.23 7.29 -2.91 -0.02 3.21 16 36 H 0.19 2.36 7.61 -2.91 -0.02 2.34 16 37 H 0.42 9.90 6.12 -92.71 -0.57 9.34 16 38 H 0.41 11.12 7.84 -92.71 -0.73 10.40 16 Total: -1.00 -66.30 342.56 5.21 -61.09 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.15 Total: 21.84 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 4.34 Total: 6.02 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -2.37 Total: -97.51 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: 0.58 Total: -35.00 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.26 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -66.30 5.21 -61.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359420914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.566 kcal (2) G-P(sol) polarization free energy of solvation -66.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds